SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    313401 4ym2:B (2.1) BS02 SGA ? GO:0030246 ... P56470 26077389
    313402 4ym2:C (2.1) BS01 BGC ? GO:0030246 ... P56470 26077389
    313403 4ym2:C (2.1) BS02 GAL ? GO:0030246 ... P56470 26077389
    313404 4ym2:D (2.1) BS01 BGC ? GO:0030246 ... P56470 26077389
    313405 4ym2:D (2.1) BS02 GAL ? GO:0030246 ... P56470 26077389
    313406 4ym3:A (1.89) BS01 BGC ? GO:0030246 ... P56470 26077389
    313407 4ym3:A (1.89) BS02 GAL ? GO:0030246 ... P56470 26077389
    313408 4ym3:B (1.89) BS01 BGC ? GO:0030246 ... P56470 26077389
    313409 4ym3:B (1.89) BS02 GAL ? GO:0030246 ... P56470 26077389
    313410 4ym3:C (1.89) BS01 BGC ? GO:0030246 ... P56470 26077389
    313411 4ym3:C (1.89) BS02 GAL ? GO:0030246 ... P56470 26077389
    313412 4ym3:D (1.89) BS01 BGC ? GO:0030246 ... P56470 26077389
    313413 4ym3:D (1.89) BS02 GAL ? GO:0030246 ... P56470 26077389
    313414 4ym4:A (3.12) BS01 peptide ? GO:0043123 ... Q96CG3 26389808
    313415 4ym5:A (4.005) BS01 dna ? GO:0000786 ... P68431 26573481
    313416 4ym5:A (4.005) BS02 dna ? GO:0000786 ... P68431 26573481
    313417 4ym5:B (4.005) BS01 dna ? GO:0000781 ... P62805 26573481
    313418 4ym5:B (4.005) BS02 dna ? GO:0000781 ... P62805 26573481
    313419 4ym5:C (4.005) BS01 dna ? GO:0000786 ... P04908 26573481
    313420 4ym5:C (4.005) BS02 dna ? GO:0000786 ... P04908 26573481
    313421 4ym5:D (4.005) BS01 dna ? GO:0000786 ... P06899 26573481
    313422 4ym5:D (4.005) BS02 dna ? GO:0000786 ... P06899 26573481
    313423 4ym5:E (4.005) BS01 dna ? GO:0000786 ... P68431 26573481
    313424 4ym5:E (4.005) BS02 dna ? GO:0000786 ... P68431 26573481
    313425 4ym5:F (4.005) BS01 dna ? GO:0000781 ... P62805 26573481
    313426 4ym5:F (4.005) BS02 dna ? GO:0000781 ... P62805 26573481
    313427 4ym5:G (4.005) BS01 dna ? GO:0000786 ... P04908 26573481
    313428 4ym5:G (4.005) BS02 dna ? GO:0000786 ... P04908 26573481
    313429 4ym5:H (4.005) BS01 dna ? GO:0000786 ... P06899 26573481
    313430 4ym5:H (4.005) BS02 dna ? GO:0000786 ... P06899 26573481
    313431 4ym6:A (3.514) BS01 dna ? GO:0000786 ... P68431 26573481
    313432 4ym6:A (3.514) BS02 dna ? GO:0000786 ... P68431 26573481
    313433 4ym6:B (3.514) BS01 dna ? GO:0000781 ... P62805 26573481
    313434 4ym6:B (3.514) BS02 dna ? GO:0000781 ... P62805 26573481
    313435 4ym6:C (3.514) BS01 dna ? GO:0000786 ... P04908 26573481
    313436 4ym6:C (3.514) BS02 dna ? GO:0000786 ... P04908 26573481
    313437 4ym6:D (3.514) BS01 dna ? GO:0000786 ... P06899 26573481
    313438 4ym6:D (3.514) BS02 dna ? GO:0000786 ... P06899 26573481
    313439 4ym6:E (3.514) BS01 dna ? GO:0000786 ... P68431 26573481
    313440 4ym6:E (3.514) BS02 dna ? GO:0000786 ... P68431 26573481
    313441 4ym6:F (3.514) BS01 dna ? GO:0000781 ... P62805 26573481
    313442 4ym6:F (3.514) BS02 dna ? GO:0000781 ... P62805 26573481
    313443 4ym6:G (3.514) BS01 dna ? GO:0000786 ... P04908 26573481
    313444 4ym6:G (3.514) BS02 dna ? GO:0000786 ... P04908 26573481
    313445 4ym6:H (3.514) BS01 dna ? GO:0000786 ... P06899 26573481
    313446 4ym6:H (3.514) BS02 dna ? GO:0000786 ... P06899 26573481
    313447 4ym7:AA (5.5) BS01 ZN 2.7.7.6 GO:0000428 ... P10964 26327374
    313448 4ym7:AA (5.5) BS02 ZN 2.7.7.6 GO:0000428 ... P10964 26327374
    313449 4ym7:AB (5.5) BS01 ZN 2.7.7.6 GO:0000428 ... P22138 26327374
    313450 4ym7:AI (5.5) BS01 ZN ? GO:0000122 ... P32529 26327374
    313451 4ym7:AJ (5.5) BS01 ZN ? GO:0000428 ... P22139 26327374
    313452 4ym7:AL (5.5) BS01 ZN ? GO:0000428 ... P40422 26327374
    313453 4ym7:BA (5.5) BS01 ZN 2.7.7.6 GO:0000428 ... P10964 26327374
    313454 4ym7:BA (5.5) BS02 ZN 2.7.7.6 GO:0000428 ... P10964 26327374
    313455 4ym7:BB (5.5) BS01 ZN 2.7.7.6 GO:0000428 ... P22138 26327374
    313456 4ym7:BI (5.5) BS01 ZN ? GO:0000122 ... P32529 26327374
    313457 4ym7:BI (5.5) BS02 ZN ? GO:0000122 ... P32529 26327374
    313458 4ym7:BJ (5.5) BS01 ZN ? GO:0000428 ... P22139 26327374
    313459 4ym7:BL (5.5) BS01 ZN ? GO:0000428 ... P40422 26327374
    313460 4ym7:CA (5.5) BS01 ZN 2.7.7.6 GO:0000428 ... P10964 26327374
    313461 4ym7:CA (5.5) BS02 ZN 2.7.7.6 GO:0000428 ... P10964 26327374
    313462 4ym7:CB (5.5) BS01 ZN 2.7.7.6 GO:0000428 ... P22138 26327374
    313463 4ym7:CI (5.5) BS01 ZN ? GO:0000122 ... P32529 26327374
    313464 4ym7:CI (5.5) BS02 ZN ? GO:0000122 ... P32529 26327374
    313465 4ym7:CJ (5.5) BS01 ZN ? GO:0000428 ... P22139 26327374
    313466 4ym7:CL (5.5) BS01 ZN ? GO:0000428 ... P40422 26327374
    313467 4ym7:DA (5.5) BS01 ZN 2.7.7.6 GO:0000428 ... P10964 26327374
    313468 4ym7:DA (5.5) BS02 ZN 2.7.7.6 GO:0000428 ... P10964 26327374
    313469 4ym7:DB (5.5) BS01 ZN 2.7.7.6 GO:0000428 ... P22138 26327374
    313470 4ym7:DI (5.5) BS01 ZN ? GO:0000122 ... P32529 26327374
    313471 4ym7:DJ (5.5) BS01 ZN ? GO:0000428 ... P22139 26327374
    313472 4ym7:DL (5.5) BS01 ZN ? GO:0000428 ... P40422 26327374
    313473 4ym7:EA (5.5) BS01 ZN 2.7.7.6 GO:0000428 ... P10964 26327374
    313474 4ym7:EA (5.5) BS02 ZN 2.7.7.6 GO:0000428 ... P10964 26327374
    313475 4ym7:EB (5.5) BS01 ZN 2.7.7.6 GO:0000428 ... P22138 26327374
    313476 4ym7:EI (5.5) BS01 ZN ? GO:0000122 ... P32529 26327374
    313477 4ym7:EI (5.5) BS02 ZN ? GO:0000122 ... P32529 26327374
    313478 4ym7:EJ (5.5) BS01 ZN ? GO:0000428 ... P22139 26327374
    313479 4ym7:EL (5.5) BS01 ZN ? GO:0000428 ... P40422 26327374
    313480 4ym7:FA (5.5) BS01 ZN 2.7.7.6 GO:0000428 ... P10964 26327374
    313481 4ym7:FA (5.5) BS02 ZN 2.7.7.6 GO:0000428 ... P10964 26327374
    313482 4ym7:FB (5.5) BS01 ZN 2.7.7.6 GO:0000428 ... P22138 26327374
    313483 4ym7:FI (5.5) BS01 ZN ? GO:0000122 ... P32529 26327374
    313484 4ym7:FJ (5.5) BS01 ZN ? GO:0000428 ... P22139 26327374
    313485 4ym7:FL (5.5) BS01 ZN ? GO:0000428 ... P40422 26327374
    313486 4ym9:A (1.8) BS01 4E4 3.4.21.36 GO:0004252 ... P00772 27465595
    313487 4yma:A (1.895) BS01 4E5 ? GO:0015276 ... P19491 26200741
    313488 4yma:B (1.895) BS01 4E5 ? GO:0015276 ... P19491 26200741
    313489 4ymb:A (1.93) BS01 4E7 ? GO:0015276 ... P22756 26200741 MOAD: Ki=0.62uM
    313490 4ymb:B (1.93) BS01 4E7 ? GO:0015276 ... P22756 26200741 MOAD: Ki=0.62uM
    313491 4ymd:A (2.87) BS01 MAN ? N/A Q9BWP8 25912189
    313492 4ymd:A (2.87) BS02 MAN ? N/A Q9BWP8 25912189
    313493 4ymd:A (2.87) BS03 CA ? N/A Q9BWP8 25912189
    313494 4ymd:A (2.87) BS04 CA ? N/A Q9BWP8 25912189
    313495 4ymd:A (2.87) BS05 CA ? N/A Q9BWP8 25912189
    313496 4ymd:B (2.87) BS01 MAN ? N/A Q9BWP8 25912189
    313497 4ymd:B (2.87) BS02 MAN ? N/A Q9BWP8 25912189
    313498 4ymd:B (2.87) BS03 CA ? N/A Q9BWP8 25912189
    313499 4ymd:B (2.87) BS04 CA ? N/A Q9BWP8 25912189
    313500 4ymd:B (2.87) BS05 CA ? N/A Q9BWP8 25912189
    313501 4ymd:C (2.87) BS01 CA ? N/A Q9BWP8 25912189
    313502 4ymd:C (2.87) BS02 CA ? N/A Q9BWP8 25912189
    313503 4ymd:C (2.87) BS03 CA ? N/A Q9BWP8 25912189
    313504 4ymd:D (2.87) BS01 MAN ? N/A Q9BWP8 25912189
    313505 4ymd:D (2.87) BS02 MAN ? N/A Q9BWP8 25912189
    313506 4ymd:D (2.87) BS03 CA ? N/A Q9BWP8 25912189
    313507 4ymd:D (2.87) BS04 CA ? N/A Q9BWP8 25912189
    313508 4ymd:D (2.87) BS05 CA ? N/A Q9BWP8 25912189
    313509 4ymd:E (2.87) BS01 CA ? N/A Q9BWP8 25912189
    313510 4ymd:E (2.87) BS02 CA ? N/A Q9BWP8 25912189
    313511 4ymd:E (2.87) BS03 CA ? N/A Q9BWP8 25912189
    313512 4ymd:F (2.87) BS01 MAN ? N/A Q9BWP8 25912189
    313513 4ymd:F (2.87) BS02 CA ? N/A Q9BWP8 25912189
    313514 4ymd:F (2.87) BS03 CA ? N/A Q9BWP8 25912189
    313515 4ymd:F (2.87) BS04 CA ? N/A Q9BWP8 25912189
    313516 4ymg:A (1.899) BS01 SAM ? GO:0008168 ... Q9HGR1 25979334 MOAD: Kd=21uM
    313517 4ymg:B (1.899) BS01 SAM ? GO:0008168 ... Q9HGR1 25979334 MOAD: Kd=21uM
    313518 4ymh:A (1.876) BS01 SAH ? GO:0008168 ... Q9HGR1 25979334 MOAD: Kd=3.2uM
    313519 4ymh:B (1.876) BS01 SAH ? GO:0008168 ... Q9HGR1 25979334 MOAD: Kd=3.2uM
    313520 4ymh:C (1.876) BS01 SAH ? GO:0008168 ... Q9HGR1 25979334 MOAD: Kd=3.2uM
    313521 4ymh:D (1.876) BS01 SAH ? GO:0008168 ... Q9HGR1 25979334 MOAD: Kd=3.2uM
    313522 4ymi:A (1.7) BS01 NAP 2.7.7.18 GO:0003824 ... B1MMZ4 N/A
    313523 4ymi:A (1.7) BS02 ADE 2.7.7.18 GO:0003824 ... B1MMZ4 N/A
    313524 4ymi:B (1.7) BS01 ADE 2.7.7.18 GO:0003824 ... B1MMZ4 N/A
    313525 4ymi:B (1.7) BS02 NAP 2.7.7.18 GO:0003824 ... B1MMZ4 N/A
    313526 4ymj:A (2.0) BS01 4EJ 2.7.10.1 GO:0004672 ... Q16288 26005534 MOAD: ic50=0.1uM
    BindingDB: IC50=100nM
    313527 4ymj:B (2.0) BS01 4EJ 2.7.10.1 GO:0004672 ... Q16288 26005534 MOAD: ic50=0.1uM
    BindingDB: IC50=100nM
    313528 4ymk:A (2.605) BS01 ZN 1.14.19.1 GO:0004768 ... P13516 26098370
    313529 4ymk:A (2.605) BS02 ZN 1.14.19.1 GO:0004768 ... P13516 26098370
    313530 4ymk:A (2.605) BS03 ST9 1.14.19.1 GO:0004768 ... P13516 26098370
    313531 4ymk:A (2.605) BS04 MPG 1.14.19.1 GO:0004768 ... P13516 26098370
    313532 4ymk:D (2.605) BS01 ZN 1.14.19.1 GO:0004768 ... P13516 26098370
    313533 4ymk:D (2.605) BS02 ZN 1.14.19.1 GO:0004768 ... P13516 26098370
    313534 4ymk:D (2.605) BS03 ST9 1.14.19.1 GO:0004768 ... P13516 26098370
    313535 4ymk:D (2.605) BS04 MPG 1.14.19.1 GO:0004768 ... P13516 26098370
    313536 4yml:A (1.75) BS01 4F0 3.2.2.9 GO:0003824 ... P0AF12 26260335 MOAD: Ki=4.5nM
    313537 4ymm:A (2.199) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 N/A
    313538 4ymm:A (2.199) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 N/A
    313539 4ymm:A (2.199) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 N/A
    313540 4ymn:A (2.591) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 29957995
    313541 4ymn:A (2.591) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 29957995
    313542 4ymn:A (2.591) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 29957995
    313543 4ymn:A (2.591) BS04 0KX 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 29957995
    313544 4ymo:A (2.148) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 29957995
    313545 4ymo:A (2.148) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 29957995
    313546 4ymo:A (2.148) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 29957995
    313547 4ymo:A (2.148) BS04 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 29957995
    313548 4ymo:A (2.148) BS05 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 29957995
    313549 4ymo:A (2.148) BS06 0KX 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 29957995
    313550 4ymp:A (3.15) BS01 HEM ? GO:0005576 ... A0A1C7D116 N/A
    313551 4ymp:A (3.15) BS02 HEM ? GO:0005576 ... A0A1C7D116 N/A
    313552 4ymp:C (3.15) BS01 HEM ? GO:0005576 ... A0A1C7D116 N/A
    313553 4ymp:C (3.15) BS02 HEM ? GO:0005576 ... A0A1C7D116 N/A
    313554 4ymq:A (2.0) BS01 ZBD ? GO:0003677 ... P51449 25840886 MOAD: Kd=1.6uM
    BindingDB: Kd=1600nM, IC50=5700nM
    313555 4ymt:B (2.599) BS01 ARG ? GO:0005886 ... Q8RCC3 25848002
    313556 4ymt:B (2.599) BS02 ARG ? GO:0005886 ... Q8RCC3 25848002
    313557 4ymt:C (2.599) BS01 ARG ? GO:0005886 ... Q8RCC3 25848002
    313558 4ymt:C (2.599) BS02 ARG ? GO:0005886 ... Q8RCC3 25848002
    313559 4ymu:A (2.503) BS01 ATP ? GO:0003333 ... Q8RCC2 25848002
    313560 4ymu:C (2.503) BS01 ARG ? GO:0005886 ... Q8RCC3 25848002
    313561 4ymu:C (2.503) BS02 ARG ? GO:0005886 ... Q8RCC3 25848002
    313562 4ymu:D (2.503) BS01 ARG ? GO:0005886 ... Q8RCC3 25848002
    313563 4ymu:D (2.503) BS02 ARG ? GO:0005886 ... Q8RCC3 25848002
    313564 4ymu:J (2.503) BS01 ATP ? GO:0003333 ... Q8RCC2 25848002
    313565 4ymu:J (2.503) BS02 MG ? GO:0003333 ... Q8RCC2 25848002
    313566 4ymv:A (3.003) BS01 ATP ? GO:0003333 ... Q8RCC2 25848002
    313567 4ymv:J (3.003) BS01 ATP ? GO:0003333 ... Q8RCC2 25848002
    313568 4ymw:C (2.804) BS01 HIS ? GO:0005886 ... Q8RCC3 25848002
    313569 4ymw:D (2.804) BS01 HIS ? GO:0005886 ... Q8RCC3 25848002
    313570 4ymx:A (1.481) BS01 ARG ? GO:0015276 ... Q8RCC4 25848002 MOAD: Kd=79nM
    313571 4ymx:B (1.481) BS01 ARG ? GO:0015276 ... Q8RCC4 25848002 MOAD: Kd=79nM
    313572 4yn0:A (2.2) BS01 MG ? N/A Q9EPU5 25838500
    313573 4yn2:A (2.02) BS01 ZN ? GO:0046872 ... A0A0J9X287 25787255
    313574 4yn3:A (1.95) BS01 MAN 3.4.21.25 GO:0004252 ... Q39547 27616715
    313575 4yn4:A (2.243) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 29957995
    313576 4yn4:A (2.243) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 29957995
    313577 4yn4:A (2.243) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 29957995
    313578 4yn4:A (2.243) BS04 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 29957995
    313579 4yn4:A (2.243) BS05 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 29957995
    313580 4yn4:A (2.243) BS06 1FZ 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 29957995
    313581 4yn8:A (1.8) BS01 MG ? GO:0000160 ... Q9RPE9 26249683
    313582 4yn8:A (1.8) BS02 MG ? GO:0000160 ... Q9RPE9 26249683
    313583 4ynb:A (2.0) BS01 4EH 3.2.2.30
    3.2.2.9
    GO:0003824 ... Q9ZMY2 26494017 MOAD: Ki=0.043nM
    313584 4ync:A (1.498) BS01 FMN 1.6.99.1 GO:0003959 ... Q02899 N/A
    313585 4ync:A (1.498) BS02 4EG 1.6.99.1 GO:0003959 ... Q02899 N/A
    313586 4ynd:A (2.79) BS01 ZN 2.1.1.-
    2.1.1.354
    GO:0000122 ... Q9NRG4 26101576
    313587 4ynd:A (2.79) BS02 ZN 2.1.1.-
    2.1.1.354
    GO:0000122 ... Q9NRG4 26101576
    313588 4ynd:A (2.79) BS03 ZN 2.1.1.-
    2.1.1.354
    GO:0000122 ... Q9NRG4 26101576
    313589 4ynd:A (2.79) BS04 4GQ 2.1.1.-
    2.1.1.354
    GO:0000122 ... Q9NRG4 26101576 BindingDB: IC50=2.8nM
    313590 4ynd:A (2.79) BS05 SAM 2.1.1.-
    2.1.1.354
    GO:0000122 ... Q9NRG4 26101576
    313591 4yne:A (2.0229) BS01 4EK 2.7.10.1 GO:0004672 ... P04629 26005534 BindingDB: IC50=3.0nM
    313592 4yng:A (2.28) BS01 SO4 2.7.1.40 GO:0000287 ... P0AD62 27050130
    313593 4yng:B (2.28) BS01 SO4 2.7.1.40 GO:0000287 ... P0AD62 27050130
    313594 4yng:B (2.28) BS02 SO4 2.7.1.40 GO:0000287 ... P0AD62 27050130
    313595 4yng:C (2.28) BS01 SO4 2.7.1.40 GO:0000287 ... P0AD62 27050130
    313596 4yng:D (2.28) BS01 SO4 2.7.1.40 GO:0000287 ... P0AD62 27050130
    313597 4yng:D (2.28) BS02 SO4 2.7.1.40 GO:0000287 ... P0AD62 27050130
    313598 4yng:E (2.28) BS01 SO4 2.7.1.40 GO:0000287 ... P0AD62 27050130
    313599 4yng:F (2.28) BS01 SO4 2.7.1.40 GO:0000287 ... P0AD62 27050130
    313600 4yng:G (2.28) BS01 SO4 2.7.1.40 GO:0000287 ... P0AD62 27050130

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).