SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    316201 4z3y:E (2.359) BS02 SF4 ? GO:0046872 ... Q39TV9 26120796
    316202 4z3y:E (2.359) BS03 SF4 ? GO:0046872 ... Q39TV9 26120796
    316203 4z3y:F (2.359) BS01 SF4 ? GO:0046872 ... Q39TV9 26120796
    316204 4z3y:F (2.359) BS02 SF4 ? GO:0046872 ... Q39TV9 26120796
    316205 4z3y:F (2.359) BS03 SF4 ? GO:0046872 ... Q39TV9 26120796
    316206 4z3y:G (2.359) BS01 SF4 ? GO:0046872 ... Q39TV9 26120796
    316207 4z3y:G (2.359) BS02 SF4 ? GO:0046872 ... Q39TV9 26120796
    316208 4z3y:G (2.359) BS03 SF4 ? GO:0046872 ... Q39TV9 26120796
    316209 4z3y:H (2.359) BS01 SF4 ? GO:0046872 ... Q39TV9 26120796
    316210 4z3y:H (2.359) BS02 SF4 ? GO:0046872 ... Q39TV9 26120796
    316211 4z3y:H (2.359) BS03 SF4 ? GO:0046872 ... Q39TV9 26120796
    316212 4z3z:A (2.666) BS01 SF4 ? GO:0009055 ... Q39TV8 26120796
    316213 4z3z:A (2.666) BS02 MG ? GO:0009055 ... Q39TV8 26120796
    316214 4z3z:A (2.666) BS03 ZN ? GO:0009055 ... Q39TV8 26120796
    316215 4z3z:B (2.666) BS01 SF4 ? GO:0009055 ... Q39TV8 26120796
    316216 4z3z:B (2.666) BS02 MG ? GO:0009055 ... Q39TV8 26120796
    316217 4z3z:B (2.666) BS03 ZN ? GO:0009055 ... Q39TV8 26120796
    316218 4z3z:C (2.666) BS01 SF4 ? GO:0009055 ... Q39TV8 26120796
    316219 4z3z:C (2.666) BS02 MG ? GO:0009055 ... Q39TV8 26120796
    316220 4z3z:C (2.666) BS03 ZN ? GO:0009055 ... Q39TV8 26120796
    316221 4z3z:D (2.666) BS01 SF4 ? GO:0009055 ... Q39TV8 26120796
    316222 4z3z:D (2.666) BS02 ZN ? GO:0009055 ... Q39TV8 26120796
    316223 4z3z:E (2.666) BS01 SF4 ? GO:0046872 ... Q39TV9 26120796
    316224 4z3z:E (2.666) BS02 SF4 ? GO:0046872 ... Q39TV9 26120796
    316225 4z3z:E (2.666) BS03 SF4 ? GO:0046872 ... Q39TV9 26120796
    316226 4z3z:F (2.666) BS01 SF4 ? GO:0046872 ... Q39TV9 26120796
    316227 4z3z:F (2.666) BS02 SF4 ? GO:0046872 ... Q39TV9 26120796
    316228 4z3z:F (2.666) BS03 SF4 ? GO:0046872 ... Q39TV9 26120796
    316229 4z3z:G (2.666) BS01 SF4 ? GO:0046872 ... Q39TV9 26120796
    316230 4z3z:G (2.666) BS02 SF4 ? GO:0046872 ... Q39TV9 26120796
    316231 4z3z:G (2.666) BS03 SF4 ? GO:0046872 ... Q39TV9 26120796
    316232 4z3z:H (2.666) BS01 SF4 ? GO:0046872 ... Q39TV9 26120796
    316233 4z3z:H (2.666) BS02 SF4 ? GO:0046872 ... Q39TV9 26120796
    316234 4z3z:H (2.666) BS03 SF4 ? GO:0046872 ... Q39TV9 26120796
    316235 4z40:A (2.35) BS01 SF4 ? GO:0009055 ... Q39TV8 26120796
    316236 4z40:A (2.35) BS02 MG ? GO:0009055 ... Q39TV8 26120796
    316237 4z40:A (2.35) BS03 ZN ? GO:0009055 ... Q39TV8 26120796
    316238 4z40:B (2.35) BS01 SF4 ? GO:0009055 ... Q39TV8 26120796
    316239 4z40:B (2.35) BS02 MG ? GO:0009055 ... Q39TV8 26120796
    316240 4z40:B (2.35) BS03 ZN ? GO:0009055 ... Q39TV8 26120796
    316241 4z40:C (2.35) BS01 SF4 ? GO:0009055 ... Q39TV8 26120796
    316242 4z40:C (2.35) BS02 MG ? GO:0009055 ... Q39TV8 26120796
    316243 4z40:C (2.35) BS03 ZN ? GO:0009055 ... Q39TV8 26120796
    316244 4z40:D (2.35) BS01 SF4 ? GO:0009055 ... Q39TV8 26120796
    316245 4z40:D (2.35) BS02 MG ? GO:0009055 ... Q39TV8 26120796
    316246 4z40:D (2.35) BS03 ZN ? GO:0009055 ... Q39TV8 26120796
    316247 4z40:E (2.35) BS01 SF4 ? GO:0046872 ... Q39TV9 26120796
    316248 4z40:E (2.35) BS02 SF4 ? GO:0046872 ... Q39TV9 26120796
    316249 4z40:E (2.35) BS03 SF4 ? GO:0046872 ... Q39TV9 26120796
    316250 4z40:F (2.35) BS01 SF4 ? GO:0046872 ... Q39TV9 26120796
    316251 4z40:F (2.35) BS02 SF4 ? GO:0046872 ... Q39TV9 26120796
    316252 4z40:F (2.35) BS03 SF4 ? GO:0046872 ... Q39TV9 26120796
    316253 4z40:G (2.35) BS01 SF4 ? GO:0046872 ... Q39TV9 26120796
    316254 4z40:G (2.35) BS02 SF4 ? GO:0046872 ... Q39TV9 26120796
    316255 4z40:G (2.35) BS03 SF4 ? GO:0046872 ... Q39TV9 26120796
    316256 4z40:H (2.35) BS01 SF4 ? GO:0046872 ... Q39TV9 26120796
    316257 4z40:H (2.35) BS02 SF4 ? GO:0046872 ... Q39TV9 26120796
    316258 4z40:H (2.35) BS03 SF4 ? GO:0046872 ... Q39TV9 26120796
    316259 4z41:A (1.89) BS01 4KV 3.2.1.17 GO:0003796 ... P00698 26280387
    316260 4z41:A (1.89) BS02 DMS 3.2.1.17 GO:0003796 ... P00698 26280387
    316261 4z43:A (2.29) BS01 FAD 1.14.19.9 GO:0000166 ... P95480 29511510
    316262 4z44:A (2.204) BS01 FAD 1.14.19.9 GO:0000166 ... P95480 29511510
    316263 4z46:A (1.85) BS01 CPT 3.2.1.17 GO:0003796 ... P00698 25974859
    316264 4z47:A (1.45) BS01 dna 3.2.2.29 GO:0000700 ... Q13569 26358812
    316265 4z47:A (1.45) BS02 dna 3.2.2.29 GO:0000700 ... Q13569 26358812
    316266 4z4c:A (2.303) BS01 rna 3.1.26.n2 GO:0000340 ... Q9UKV8 26359634
    316267 4z4c:A (2.303) BS02 rna 3.1.26.n2 GO:0000340 ... Q9UKV8 26359634
    316268 4z4c:A (2.303) BS03 MG 3.1.26.n2 GO:0000340 ... Q9UKV8 26359634
    316269 4z4d:A (1.6) BS01 rna 3.1.26.n2 GO:0000340 ... Q9UKV8 26359634
    316270 4z4d:A (1.6) BS02 rna 3.1.26.n2 GO:0000340 ... Q9UKV8 26359634
    316271 4z4d:A (1.6) BS03 MG 3.1.26.n2 GO:0000340 ... Q9UKV8 26359634
    316272 4z4e:A (1.8) BS01 rna 3.1.26.n2 GO:0000340 ... Q9UKV8 26359634
    316273 4z4e:A (1.8) BS02 rna 3.1.26.n2 GO:0000340 ... Q9UKV8 26359634
    316274 4z4e:A (1.8) BS03 MG 3.1.26.n2 GO:0000340 ... Q9UKV8 26359634
    316275 4z4f:A (2.8) BS01 rna 3.1.26.n2 GO:0000340 ... Q9UKV8 26359634
    316276 4z4f:A (2.8) BS02 rna 3.1.26.n2 GO:0000340 ... Q9UKV8 26359634
    316277 4z4f:A (2.8) BS03 MG 3.1.26.n2 GO:0000340 ... Q9UKV8 26359634
    316278 4z4g:A (2.7) BS01 rna 3.1.26.n2 GO:0000340 ... Q9UKV8 26359634
    316279 4z4g:A (2.7) BS02 rna 3.1.26.n2 GO:0000340 ... Q9UKV8 26359634
    316280 4z4g:A (2.7) BS03 MG 3.1.26.n2 GO:0000340 ... Q9UKV8 26359634
    316281 4z4h:A (2.504) BS01 rna 3.1.26.n2 GO:0000340 ... Q9UKV8 26359634
    316282 4z4h:A (2.504) BS02 rna 3.1.26.n2 GO:0000340 ... Q9UKV8 26359634
    316283 4z4h:A (2.504) BS03 MG 3.1.26.n2 GO:0000340 ... Q9UKV8 26359634
    316284 4z4i:A (2.801) BS01 rna 3.1.26.n2 GO:0000340 ... Q9UKV8 26359634
    316285 4z4i:A (2.801) BS02 rna 3.1.26.n2 GO:0000340 ... Q9UKV8 26359634
    316286 4z4i:A (2.801) BS03 MG 3.1.26.n2 GO:0000340 ... Q9UKV8 26359634
    316287 4z4k:A (2.8) BS01 ZN ? GO:0006091 ... P42212
    Q86VP1
    27062441
    316288 4z4k:A (2.8) BS02 ZN ? GO:0006091 ... P42212
    Q86VP1
    27062441
    316289 4z4k:B (2.8) BS01 ZN ? GO:0006091 ... P42212
    Q86VP1
    27062441
    316290 4z4k:B (2.8) BS02 ZN ? GO:0006091 ... P42212
    Q86VP1
    27062441
    316291 4z4m:A (2.15) BS01 ZN ? GO:0006091 ... P42212
    Q86VP1
    27062441
    316292 4z4m:B (2.15) BS01 ZN ? GO:0006091 ... P42212
    Q86VP1
    27062441
    316293 4z4p:A (2.2) BS01 ZN 2.1.1.364 N/A O14686 26320581
    316294 4z4p:A (2.2) BS02 SAH 2.1.1.364 N/A O14686 26320581
    316295 4z4q:A (3.04) BS01 dna 5.6.2.2 GO:0003677 ... P72525
    Q59961
    N/A
    316296 4z4q:A (3.04) BS02 dna 5.6.2.2 GO:0003677 ... P72525
    Q59961
    N/A
    316297 4z4q:A (3.04) BS03 dna 5.6.2.2 GO:0003677 ... P72525
    Q59961
    N/A
    316298 4z4q:A (3.04) BS04 MG 5.6.2.2 GO:0003677 ... P72525
    Q59961
    N/A
    316299 4z4q:A (3.04) BS05 MG 5.6.2.2 GO:0003677 ... P72525
    Q59961
    N/A
    316300 4z4q:A (3.04) BS06 PDQ 5.6.2.2 GO:0003677 ... P72525
    Q59961
    N/A
    316301 4z4q:B (3.04) BS01 dna 5.6.2.2 GO:0003677 ... P72525
    Q59961
    N/A
    316302 4z4q:B (3.04) BS02 dna 5.6.2.2 GO:0003677 ... P72525
    Q59961
    N/A
    316303 4z4q:B (3.04) BS03 dna 5.6.2.2 GO:0003677 ... P72525
    Q59961
    N/A
    316304 4z4q:B (3.04) BS04 MG 5.6.2.2 GO:0003677 ... P72525
    Q59961
    N/A
    316305 4z4q:B (3.04) BS05 MG 5.6.2.2 GO:0003677 ... P72525
    Q59961
    N/A
    316306 4z4q:B (3.04) BS06 PDQ 5.6.2.2 GO:0003677 ... P72525
    Q59961
    N/A
    316307 4z4r:A (1.801) BS01 FUL ? N/A Q5F4T5 25980740
    316308 4z4r:A (1.801) BS02 FUL ? N/A Q5F4T5 25980740
    316309 4z4r:A (1.801) BS03 FUL ? N/A Q5F4T5 25980740
    316310 4z4r:B (1.801) BS01 FUL ? N/A Q5F4T5 25980740
    316311 4z4r:B (1.801) BS02 FUL ? N/A Q5F4T5 25980740
    316312 4z4r:B (1.801) BS03 FUL ? N/A Q5F4T5 25980740
    316313 4z4s:A (1.8) BS01 FUL ? N/A Q5F4T5 25980740
    316314 4z4s:A (1.8) BS02 FUL ? N/A Q5F4T5 25980740
    316315 4z4s:A (1.8) BS03 FUL ? N/A Q5F4T5 25980740
    316316 4z4s:B (1.8) BS01 FUL ? N/A Q5F4T5 25980740
    316317 4z4s:B (1.8) BS02 FUL ? N/A Q5F4T5 25980740
    316318 4z4t:A (1.8) BS01 FUL ? N/A Q5F4T5 25980740
    316319 4z4t:A (1.8) BS02 FUL ? N/A Q5F4T5 25980740
    316320 4z4t:B (1.8) BS01 FUL ? N/A Q5F4T5 25980740
    316321 4z4t:B (1.8) BS02 FUL ? N/A Q5F4T5 25980740
    316322 4z4u:A (1.89) BS01 FUL ? N/A Q5F4T5 25980740
    316323 4z4u:B (1.89) BS01 FUL ? N/A Q5F4T5 25980740
    316324 4z4v:A (1.8) BS01 FUL ? N/A Q5F4T5 25980740
    316325 4z4v:B (1.8) BS01 FUL ? N/A Q5F4T5 25980740
    316326 4z4w:A (1.8) BS01 FUL ? N/A Q5F4T5 25980740
    316327 4z4w:B (1.8) BS01 FUL ? N/A Q5F4T5 25980740
    316328 4z4y:A (1.797) BS01 FUC ? N/A Q5F4T5 25980740
    316329 4z4z:A (1.801) BS01 FUC ? N/A Q5F4T5 25980740
    316330 4z4z:A (1.801) BS02 FUC ? N/A Q5F4T5 25980740
    316331 4z4z:B (1.801) BS01 FUC ? N/A Q5F4T5 25980740
    316332 4z51:A (1.86) BS01 GNP ? GO:0005525 ... Q9UH03 N/A
    316333 4z51:A (1.86) BS02 MG ? GO:0005525 ... Q9UH03 N/A
    316334 4z53:A (3.26) BS01 dna 5.6.2.2 GO:0003677 ... P72525
    Q59961
    N/A
    316335 4z53:A (3.26) BS02 dna 5.6.2.2 GO:0003677 ... P72525
    Q59961
    N/A
    316336 4z53:A (3.26) BS03 MG 5.6.2.2 GO:0003677 ... P72525
    Q59961
    N/A
    316337 4z53:A (3.26) BS04 TR6 5.6.2.2 GO:0003677 ... P72525
    Q59961
    N/A
    316338 4z53:B (3.26) BS01 dna 5.6.2.2 GO:0003677 ... P72525
    Q59961
    N/A
    316339 4z53:B (3.26) BS02 dna 5.6.2.2 GO:0003677 ... P72525
    Q59961
    N/A
    316340 4z53:B (3.26) BS03 dna 5.6.2.2 GO:0003677 ... P72525
    Q59961
    N/A
    316341 4z53:B (3.26) BS04 MG 5.6.2.2 GO:0003677 ... P72525
    Q59961
    N/A
    316342 4z53:B (3.26) BS05 TR6 5.6.2.2 GO:0003677 ... P72525
    Q59961
    N/A
    316343 4z54:A (1.83) BS01 GDP ? GO:0005525 ... Q9UH03 N/A
    316344 4z54:A (1.83) BS02 MG ? GO:0005525 ... Q9UH03 N/A
    316345 4z54:A (1.83) BS03 GDP ? GO:0005525 ... Q9UH03 N/A
    316346 4z54:B (1.83) BS01 GDP ? GO:0005525 ... Q9UH03 N/A
    316347 4z54:B (1.83) BS02 GDP ? GO:0005525 ... Q9UH03 N/A
    316348 4z54:B (1.83) BS03 MG ? GO:0005525 ... Q9UH03 N/A
    316349 4z55:A (1.55) BS01 4LO 2.7.10.1 GO:0004672 ... Q9UM73 26750252 MOAD: ic50=13nM
    316350 4z58:A (2.5) BS01 dna ? GO:0003677 ... P23873 N/A
    316351 4z59:A (2.3) BS01 dna ? GO:0003677 ... P23873 N/A
    316352 4z5c:A (2.5) BS01 dna ? GO:0003677 ... P23873 N/A
    316353 4z5c:A (2.5) BS02 dna ? GO:0003677 ... P23873 N/A
    316354 4z5c:B (2.5) BS01 dna ? GO:0003677 ... P23873 N/A
    316355 4z5c:B (2.5) BS02 dna ? GO:0003677 ... P23873 N/A
    316356 4z5d:A (2.15) BS01 dna ? GO:0003677 ... P23873 N/A
    316357 4z5d:A (2.15) BS02 dna ? GO:0003677 ... P23873 N/A
    316358 4z5d:B (2.15) BS01 dna ? GO:0003677 ... P23873 N/A
    316359 4z5d:B (2.15) BS02 dna ? GO:0003677 ... P23873 N/A
    316360 4z5h:A (2.1) BS01 dna ? GO:0003677 ... P23873 N/A
    316361 4z5p:A (1.9) BS01 HEM ? GO:0004497 ... Q8GGQ1 N/A
    316362 4z5p:B (1.9) BS01 HEM ? GO:0004497 ... Q8GGQ1 N/A
    316363 4z5q:A (1.801) BS01 HEM ? GO:0004497 ... Q8GGM6 N/A
    316364 4z5t:A (2.8) BS01 dna ? GO:0000786 ... Q6NXT2 26779285
    316365 4z5t:A (2.8) BS02 dna ? GO:0000786 ... Q6NXT2 26779285
    316366 4z5t:B (2.8) BS01 dna ? GO:0000781 ... P62805 26779285
    316367 4z5t:B (2.8) BS02 dna ? GO:0000781 ... P62805 26779285
    316368 4z5t:C (2.8) BS01 dna ? GO:0000786 ... P04908 26779285
    316369 4z5t:C (2.8) BS02 dna ? GO:0000786 ... P04908 26779285
    316370 4z5t:D (2.8) BS01 dna ? GO:0000786 ... P06899 26779285
    316371 4z5t:D (2.8) BS02 dna ? GO:0000786 ... P06899 26779285
    316372 4z5t:E (2.8) BS01 dna ? GO:0000786 ... Q6NXT2 26779285
    316373 4z5t:E (2.8) BS02 dna ? GO:0000786 ... Q6NXT2 26779285
    316374 4z5t:F (2.8) BS01 dna ? GO:0000781 ... P62805 26779285
    316375 4z5t:F (2.8) BS02 dna ? GO:0000781 ... P62805 26779285
    316376 4z5t:G (2.8) BS01 dna ? GO:0000786 ... P04908 26779285
    316377 4z5t:G (2.8) BS02 dna ? GO:0000786 ... P04908 26779285
    316378 4z5t:H (2.8) BS01 dna ? GO:0000786 ... P06899 26779285
    316379 4z5t:H (2.8) BS02 dna ? GO:0000786 ... P06899 26779285
    316380 4z5w:A (2.2) BS01 peptide 2.7.11.1 N/A Q8LPB4 26308901
    316381 4z5w:B (2.2) BS01 peptide 2.7.11.1 N/A Q8LPB4 26308901
    316382 4z5x:A (2.1) BS01 GDE 2.4.1.1 GO:0000166 ... P00489 25980608 MOAD: Ki=1730uM
    316383 4z5x:A (2.1) BS02 PLP 2.4.1.1 GO:0000166 ... P00489 25980608
    316384 4z5y:A (1.561) BS01 ZN ? GO:0018189 ... Q88QV5 N/A
    316385 4z5y:A (1.561) BS02 CU ? GO:0018189 ... Q88QV5 N/A
    316386 4z5z:A (2.54) BS01 ZN ? GO:0018189 ... Q88QV5 N/A
    316387 4z5z:A (2.54) BS02 MG ? GO:0018189 ... Q88QV5 N/A
    316388 4z60:A (2.5) BS01 ZN ? GO:0018189 ... Q88QV5 N/A
    316389 4z60:A (2.5) BS02 ZN ? GO:0018189 ... Q88QV5 N/A
    316390 4z61:A (2.75) BS01 peptide 2.7.11.1 N/A Q8LPB4 26308901
    316391 4z61:B (2.75) BS01 peptide 2.7.11.1 N/A Q8LPB4 26308901
    316392 4z63:A (2.514) BS01 peptide 2.7.11.1
    4.6.1.2
    N/A Q9ZVR7 26308901
    316393 4z64:A (2.659) BS01 peptide 2.7.11.1
    4.6.1.2
    N/A Q9ZVR7 26308901
    316394 4z64:A (2.659) BS02 SO4 2.7.11.1
    4.6.1.2
    N/A Q9ZVR7 26308901
    316395 4z64:A (2.659) BS03 SO4 2.7.11.1
    4.6.1.2
    N/A Q9ZVR7 26308901
    316396 4z65:A (1.25) BS01 ZN 3.4.17.2 GO:0004181 ... P09955 26457527
    316397 4z65:A (1.25) BS02 0X9 3.4.17.2 GO:0004181 ... P09955 26457527
    316398 4z65:A (1.25) BS03 ZN 3.4.17.2 GO:0004181 ... P09955 26457527
    316399 4z66:A (2.5) BS01 dna ? GO:0000786 ... P84233 26416878
    316400 4z66:A (2.5) BS02 dna ? GO:0000786 ... P84233 26416878

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).