SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    31601 1lxy:A (2.0) BS01 CIR 3.5.3.6 GO:0005737 ... P23793 15062088
    31602 1lxy:B (2.0) BS01 CIR 3.5.3.6 GO:0005737 ... P23793 15062088
    31603 1ly3:A (1.9) BS01 NAP 1.5.1.3 GO:0003729 ... P16184 12198294
    31604 1ly3:A (1.9) BS02 COG 1.5.1.3 GO:0003729 ... P16184 12198294 MOAD: ic50=87nM
    BindingDB: IC50=87nM
    31605 1ly4:A (2.1) BS01 NAP 1.5.1.3 GO:0003729 ... P16184 12198294
    31606 1ly4:A (2.1) BS02 COQ 1.5.1.3 GO:0003729 ... P16184 12198294 MOAD: ic50=76nM
    BindingDB: IC50=76nM
    31607 1ly8:A (2.05) BS01 MAN 1.11.1.7 GO:0000302 ... P28314 12777761
    31608 1ly8:A (2.05) BS02 CA 1.11.1.7 GO:0000302 ... P28314 12777761
    31609 1ly8:A (2.05) BS03 CA 1.11.1.7 GO:0000302 ... P28314 12777761
    31610 1ly8:A (2.05) BS04 HEM 1.11.1.7 GO:0000302 ... P28314 12777761
    31611 1ly8:B (2.05) BS01 MAN 1.11.1.7 GO:0000302 ... P28314 12777761
    31612 1ly8:B (2.05) BS02 CA 1.11.1.7 GO:0000302 ... P28314 12777761
    31613 1ly8:B (2.05) BS03 CA 1.11.1.7 GO:0000302 ... P28314 12777761
    31614 1ly8:B (2.05) BS04 HEM 1.11.1.7 GO:0000302 ... P28314 12777761
    31615 1ly9:A (2.0) BS01 CA 1.11.1.7 GO:0000302 ... P28314 12777760
    31616 1ly9:A (2.0) BS02 CA 1.11.1.7 GO:0000302 ... P28314 12777760
    31617 1ly9:A (2.0) BS03 HEM 1.11.1.7 GO:0000302 ... P28314 12777760
    31618 1ly9:B (2.0) BS01 CA 1.11.1.7 GO:0000302 ... P28314 12777760
    31619 1ly9:B (2.0) BS02 CA 1.11.1.7 GO:0000302 ... P28314 12777760
    31620 1ly9:B (2.0) BS03 HEM 1.11.1.7 GO:0000302 ... P28314 12777760
    31621 1lyb:A (2.5) BS01 peptide 3.4.23.5 GO:0004190 ... P07339 8393577
    31622 1lyb:B (2.5) BS01 peptide 3.4.23.5 GO:0004190 ... P07339 8393577
    31623 1lyb:C (2.5) BS01 peptide 3.4.23.5 GO:0004190 ... P07339 8393577
    31624 1lyb:D (2.5) BS01 peptide 3.4.23.5 GO:0004190 ... P07339 8393577
    31625 1lyc:A (1.57) BS01 CA 1.11.1.7 GO:0000302 ... P28314 12777760
    31626 1lyc:A (1.57) BS02 CA 1.11.1.7 GO:0000302 ... P28314 12777760
    31627 1lyc:A (1.57) BS03 HEM 1.11.1.7 GO:0000302 ... P28314 12777760
    31628 1lyc:B (1.57) BS01 CA 1.11.1.7 GO:0000302 ... P28314 12777760
    31629 1lyc:B (1.57) BS02 CA 1.11.1.7 GO:0000302 ... P28314 12777760
    31630 1lyc:B (1.57) BS03 HEM 1.11.1.7 GO:0000302 ... P28314 12777760
    31631 1lyk:A (2.0) BS01 BMA 1.11.1.7 GO:0000302 ... P28314 12777760
    31632 1lyk:A (2.0) BS02 CA 1.11.1.7 GO:0000302 ... P28314 12777760
    31633 1lyk:A (2.0) BS03 CA 1.11.1.7 GO:0000302 ... P28314 12777760
    31634 1lyk:A (2.0) BS04 HEM 1.11.1.7 GO:0000302 ... P28314 12777760
    31635 1lyk:B (2.0) BS01 MAN 1.11.1.7 GO:0000302 ... P28314 12777760
    31636 1lyk:B (2.0) BS02 CA 1.11.1.7 GO:0000302 ... P28314 12777760
    31637 1lyk:B (2.0) BS03 CA 1.11.1.7 GO:0000302 ... P28314 12777760
    31638 1lyk:B (2.0) BS04 HEM 1.11.1.7 GO:0000302 ... P28314 12777760
    31639 1lyl:A (2.8) BS01 LYS 6.1.1.6 GO:0000049 ... P0A8N5 7735833
    31640 1lyl:B (2.8) BS01 LYS 6.1.1.6 GO:0000049 ... P0A8N5 7735833
    31641 1lyl:C (2.8) BS01 LYS 6.1.1.6 GO:0000049 ... P0A8N5 7735833
    31642 1lyx:A (1.9) BS01 PGA 5.3.1.1 GO:0004807 ... Q07412 12403619 MOAD: Ki=0.029mM
    31643 1lz9:A (1.7) BS01 BR 3.2.1.17 GO:0003796 ... P00698 10339408
    31644 1lz9:A (1.7) BS02 BR 3.2.1.17 GO:0003796 ... P00698 10339408
    31645 1lzi:A (1.35) BS01 MN 2.4.1.37
    2.4.1.40
    GO:0005975 ... P16442 12198488
    31646 1lzi:A (1.35) BS02 UDP 2.4.1.37
    2.4.1.40
    GO:0005975 ... P16442 12198488
    31647 1lzj:A (1.32) BS01 FUC 2.4.1.37
    2.4.1.40
    GO:0005975 ... P16442 12198488
    31648 1lzj:A (1.32) BS02 MN 2.4.1.37
    2.4.1.40
    GO:0005975 ... P16442 12198488
    31649 1lzj:A (1.32) BS03 UDP 2.4.1.37
    2.4.1.40
    GO:0005975 ... P16442 12198488
    31650 1lzo:B (2.8) BS01 PGA 5.3.1.1 GO:0004807 ... Q07412 12403619
    31651 1lzo:D (2.8) BS01 PGA 5.3.1.1 GO:0004807 ... Q07412 12403619
    31652 1lzq:A (2.2) BS01 0ZQ 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P03367 12699382 MOAD: Ki=4.1nM
    31653 1lzq:B (2.2) BS01 0ZQ 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P03367 12699382
    31654 1lzv:A (2.3) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 12171926
    31655 1lzx:A (2.0) BS01 ZN 1.14.13.39 GO:0004517 ... P29476 12437343
    31656 1lzx:A (2.0) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 12437343
    31657 1lzx:A (2.0) BS03 H4B 1.14.13.39 GO:0004517 ... P29476 12437343
    31658 1lzx:A (2.0) BS04 HAR 1.14.13.39 GO:0004517 ... P29476 12437343
    31659 1lzx:A (2.0) BS05 H4B 1.14.13.39 GO:0004517 ... P29476 12437343
    31660 1lzx:B (2.0) BS01 ZN 1.14.13.39 GO:0004517 ... P29476 12437343
    31661 1lzx:B (2.0) BS02 H4B 1.14.13.39 GO:0004517 ... P29476 12437343
    31662 1lzx:B (2.0) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 12437343
    31663 1lzx:B (2.0) BS04 H4B 1.14.13.39 GO:0004517 ... P29476 12437343
    31664 1lzx:B (2.0) BS05 HAR 1.14.13.39 GO:0004517 ... P29476 12437343
    31665 1lzz:A (2.05) BS01 ZN 1.14.13.39 GO:0004517 ... P29476 12437343
    31666 1lzz:A (2.05) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 12437343
    31667 1lzz:A (2.05) BS03 H4B 1.14.13.39 GO:0004517 ... P29476 12437343
    31668 1lzz:A (2.05) BS04 IHG 1.14.13.39 GO:0004517 ... P29476 12437343
    31669 1lzz:A (2.05) BS05 H4B 1.14.13.39 GO:0004517 ... P29476 12437343
    31670 1lzz:B (2.05) BS01 ZN 1.14.13.39 GO:0004517 ... P29476 12437343
    31671 1lzz:B (2.05) BS02 H4B 1.14.13.39 GO:0004517 ... P29476 12437343
    31672 1lzz:B (2.05) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 12437343
    31673 1lzz:B (2.05) BS04 H4B 1.14.13.39 GO:0004517 ... P29476 12437343
    31674 1lzz:B (2.05) BS05 IHG 1.14.13.39 GO:0004517 ... P29476 12437343
    31675 1m00:A (2.05) BS01 ZN 1.14.13.39 GO:0004517 ... P29476 12437343
    31676 1m00:A (2.05) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 12437343
    31677 1m00:A (2.05) BS03 H4B 1.14.13.39 GO:0004517 ... P29476 12437343
    31678 1m00:A (2.05) BS04 BHH 1.14.13.39 GO:0004517 ... P29476 12437343
    31679 1m00:A (2.05) BS05 H4B 1.14.13.39 GO:0004517 ... P29476 12437343
    31680 1m00:B (2.05) BS01 ZN 1.14.13.39 GO:0004517 ... P29476 12437343
    31681 1m00:B (2.05) BS02 H4B 1.14.13.39 GO:0004517 ... P29476 12437343
    31682 1m00:B (2.05) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 12437343
    31683 1m00:B (2.05) BS04 H4B 1.14.13.39 GO:0004517 ... P29476 12437343
    31684 1m00:B (2.05) BS05 BHH 1.14.13.39 GO:0004517 ... P29476 12437343
    31685 1m01:A (2.1) BS01 NAG 3.2.1.52 GO:0004553 ... O85361 12171933 MOAD: Kd=3mM
    31686 1m03:A (1.9) BS01 NAG 3.2.1.52 GO:0004553 ... O85361 12171933
    31687 1m04:A (1.95) BS01 NAG 3.2.1.52 GO:0004553 ... O85361 12171933
    31688 1m05:A (1.9) BS01 peptide ? N/A P01889 12391232
    31689 1m05:C (1.9) BS01 peptide ? N/A P01889 12391232
    31690 1m06:F (3.5) BS01 peptide ? GO:0005198 ... P08767 12473449
    31691 1m06:F (3.5) BS02 dna ? GO:0005198 ... P08767 12473449
    31692 1m07:A (1.8) BS01 dna 3.1.27.- GO:0003676 ... P11916 12499382
    31693 1m07:A (1.8) BS02 dna 3.1.27.- GO:0003676 ... P11916 12499382
    31694 1m07:B (1.8) BS01 dna 3.1.27.- GO:0003676 ... P11916 12499382
    31695 1m07:B (1.8) BS02 dna 3.1.27.- GO:0003676 ... P11916 12499382
    31696 1m08:A (2.1) BS01 ZN 3.1.-.- GO:0004519 ... Q47112 12441102
    31697 1m08:B (2.1) BS01 ZN 3.1.-.- GO:0004519 ... Q47112 12441102
    31698 1m0b:A (2.45) BS01 0ZQ 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P03367 15560786
    31699 1m0b:B (2.45) BS01 0ZQ 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P03367 15560786 MOAD: Ki=1.53nM
    31700 1m0d:A (1.9) BS01 MN 3.1.21.2 GO:0003677 ... P00641 12093751
    31701 1m0d:B (1.9) BS01 MN 3.1.21.2 GO:0003677 ... P00641 12093751
    31702 1m0d:C (1.9) BS01 MN 3.1.21.2 GO:0003677 ... P00641 12093751
    31703 1m0d:D (1.9) BS01 MN 3.1.21.2 GO:0003677 ... P00641 12093751
    31704 1m0e:A (2.5) BS01 dna 2.1.1.37 GO:0003886 ... P05102 12206775
    31705 1m0e:A (2.5) BS02 dna 2.1.1.37 GO:0003886 ... P05102 12206775
    31706 1m0e:A (2.5) BS03 SAH 2.1.1.37 GO:0003886 ... P05102 12206775
    31707 1m0k:A (1.43) BS01 RET ? GO:0005216 ... P02945 12206785
    31708 1m0l:A (1.47) BS01 RET ? GO:0005216 ... P02945 12206785
    31709 1m0m:A (1.43) BS01 RET ? GO:0005216 ... P02945 12206786
    31710 1m0n:A (2.2) BS01 HCP 4.1.1.64 GO:0030170 ... P16932 12369820 MOAD: Ki=6mM
    31711 1m0o:A (2.4) BS01 MPM 4.1.1.64 GO:0030170 ... P16932 12369820 MOAD: Ki=4.9mM
    31712 1m0p:A (2.6) BS01 ELP 4.1.1.64 GO:0030170 ... P16932 12369820
    31713 1m0q:A (2.0) BS01 EPC 4.1.1.64 GO:0030170 ... P16932 12369820 MOAD: Ki=1.1mM
    31714 1m0u:A (1.75) BS01 GSH 2.5.1.18 GO:0004364 ... P41043 12547198
    31715 1m0v:A (-1.00) BS01 peptide 3.1.3.48 GO:0004725 ... P08538 12234185
    31716 1m0w:A (1.8) BS01 MG 6.3.2.3 GO:0000287 ... Q08220 12467574
    31717 1m0w:A (1.8) BS02 ANP 6.3.2.3 GO:0000287 ... Q08220 12467574
    31718 1m0w:A (1.8) BS03 3GC 6.3.2.3 GO:0000287 ... Q08220 12467574
    31719 1m0w:B (1.8) BS01 MG 6.3.2.3 GO:0000287 ... Q08220 12467574
    31720 1m0w:B (1.8) BS02 ANP 6.3.2.3 GO:0000287 ... Q08220 12467574
    31721 1m0w:B (1.8) BS03 3GC 6.3.2.3 GO:0000287 ... Q08220 12467574
    31722 1m13:A (2.15) BS01 HYF ? GO:0003677 ... O75469 12578355 MOAD: Kd=27nM
    31723 1m15:A (1.2) BS01 ARG 2.7.3.3 GO:0003824 ... P51541 12454458
    31724 1m15:A (1.2) BS02 ADP 2.7.3.3 GO:0003824 ... P51541 12454458
    31725 1m17:A (2.6) BS01 AQ4 2.7.10.1 GO:0004672 ... P00533 12196540 BindingDB: IC50=30nM, Ki=0.100000nM, Kd=0.520000nM
    31726 1m18:A (2.45) BS01 dna ? GO:0000776 ... P02302 12559907
    31727 1m18:A (2.45) BS02 dna ? GO:0000776 ... P02302 12559907
    31728 1m18:B (2.45) BS01 dna ? GO:0000786 ... P62799 12559907
    31729 1m18:B (2.45) BS02 dna ? GO:0000786 ... P62799 12559907
    31730 1m18:C (2.45) BS01 dna ? GO:0000786 ... P06897 12559907
    31731 1m18:C (2.45) BS02 dna ? GO:0000786 ... P06897 12559907
    31732 1m18:D (2.45) BS01 dna ? GO:0000786 ... P02281 12559907
    31733 1m18:D (2.45) BS02 dna ? GO:0000786 ... P02281 12559907
    31734 1m18:E (2.45) BS01 dna ? GO:0000776 ... P02302 12559907
    31735 1m18:E (2.45) BS02 dna ? GO:0000776 ... P02302 12559907
    31736 1m18:F (2.45) BS01 dna ? GO:0000786 ... P62799 12559907
    31737 1m18:F (2.45) BS02 dna ? GO:0000786 ... P62799 12559907
    31738 1m18:G (2.45) BS01 dna ? GO:0000786 ... P06897 12559907
    31739 1m18:G (2.45) BS02 dna ? GO:0000786 ... P06897 12559907
    31740 1m18:H (2.45) BS01 dna ? GO:0000786 ... P02281 12559907
    31741 1m18:H (2.45) BS02 dna ? GO:0000786 ... P02281 12559907
    31742 1m19:A (2.3) BS01 dna ? GO:0000776 ... P02302 12559907
    31743 1m19:A (2.3) BS02 dna ? GO:0000776 ... P02302 12559907
    31744 1m19:B (2.3) BS01 dna ? GO:0000786 ... P62799 12559907
    31745 1m19:B (2.3) BS02 dna ? GO:0000786 ... P62799 12559907
    31746 1m19:C (2.3) BS01 dna ? GO:0000786 ... P06897 12559907
    31747 1m19:C (2.3) BS02 dna ? GO:0000786 ... P06897 12559907
    31748 1m19:D (2.3) BS01 dna ? GO:0000786 ... P02281 12559907
    31749 1m19:D (2.3) BS02 dna ? GO:0000786 ... P02281 12559907
    31750 1m19:E (2.3) BS01 dna ? GO:0000776 ... P02302 12559907
    31751 1m19:E (2.3) BS02 dna ? GO:0000776 ... P02302 12559907
    31752 1m19:F (2.3) BS01 dna ? GO:0000786 ... P62799 12559907
    31753 1m19:F (2.3) BS02 dna ? GO:0000786 ... P62799 12559907
    31754 1m19:G (2.3) BS01 dna ? GO:0000786 ... P06897 12559907
    31755 1m19:G (2.3) BS02 dna ? GO:0000786 ... P06897 12559907
    31756 1m19:H (2.3) BS01 dna ? GO:0000786 ... P02281 12559907
    31757 1m19:H (2.3) BS02 dna ? GO:0000786 ... P02281 12559907
    31758 1m1a:A (2.65) BS01 dna ? GO:0000776 ... P02302 12559907
    31759 1m1a:A (2.65) BS02 dna ? GO:0000776 ... P02302 12559907
    31760 1m1a:B (2.65) BS01 dna ? GO:0000786 ... P62799 12559907
    31761 1m1a:B (2.65) BS02 dna ? GO:0000786 ... P62799 12559907
    31762 1m1a:C (2.65) BS01 dna ? GO:0000786 ... P06897 12559907
    31763 1m1a:C (2.65) BS02 dna ? GO:0000786 ... P06897 12559907
    31764 1m1a:D (2.65) BS01 dna ? GO:0000786 ... P02281 12559907
    31765 1m1a:D (2.65) BS02 dna ? GO:0000786 ... P02281 12559907
    31766 1m1a:E (2.65) BS01 dna ? GO:0000776 ... P02302 12559907
    31767 1m1a:E (2.65) BS02 dna ? GO:0000776 ... P02302 12559907
    31768 1m1a:F (2.65) BS01 dna ? GO:0000786 ... P62799 12559907
    31769 1m1a:F (2.65) BS02 dna ? GO:0000786 ... P62799 12559907
    31770 1m1a:G (2.65) BS01 dna ? GO:0000786 ... P06897 12559907
    31771 1m1a:G (2.65) BS02 dna ? GO:0000786 ... P06897 12559907
    31772 1m1a:H (2.65) BS01 dna ? GO:0000786 ... P02281 12559907
    31773 1m1a:H (2.65) BS02 dna ? GO:0000786 ... P02281 12559907
    31774 1m1b:A (2.25) BS01 MG 5.4.2.9 GO:0003824 ... P56839 12162742
    31775 1m1b:A (2.25) BS02 SPV 5.4.2.9 GO:0003824 ... P56839 12162742 MOAD: Ki=22uM
    31776 1m1b:B (2.25) BS01 SPV 5.4.2.9 GO:0003824 ... P56839 12162742 MOAD: Ki=22uM
    31777 1m1d:A (2.2) BS01 peptide 2.3.1.48 GO:0004402 ... Q27198 12391296
    31778 1m1d:C (2.2) BS01 peptide 2.3.1.48 GO:0004402 ... Q27198 12391296
    31779 1m1j:B (2.7) BS01 peptide ? GO:0005102 ... Q02020 11601975
    31780 1m1j:B (2.7) BS02 CA ? GO:0005102 ... Q02020 11601975
    31781 1m1j:C (2.7) BS01 peptide ? GO:0005102 ... O93568 11601975
    31782 1m1j:C (2.7) BS02 CA ? GO:0005102 ... O93568 11601975
    31783 1m1j:E (2.7) BS01 peptide ? GO:0005102 ... Q02020 11601975
    31784 1m1j:E (2.7) BS02 CA ? GO:0005102 ... Q02020 11601975
    31785 1m1j:F (2.7) BS01 peptide ? GO:0005102 ... O93568 11601975
    31786 1m1j:F (2.7) BS02 CA ? GO:0005102 ... O93568 11601975
    31787 1m1k:1 (3.2) BS01 rna ? GO:0003735 ... P60619 12150912
    31788 1m1k:1 (3.2) BS02 MG ? GO:0003735 ... P60619 12150912
    31789 1m1k:2 (3.2) BS01 rna ? GO:0003723 ... P32410 12150912
    31790 1m1k:3 (3.2) BS01 rna ? GO:0003735 ... P22452 12150912
    31791 1m1k:4 (3.2) BS01 rna ? GO:0003735 ... P32411 12150912
    31792 1m1k:4 (3.2) BS02 MG ? GO:0003735 ... P32411 12150912
    31793 1m1k:C (3.2) BS01 rna ? GO:0002181 ... P20276 12150912
    31794 1m1k:C (3.2) BS02 MG ? GO:0002181 ... P20276 12150912
    31795 1m1k:D (3.2) BS01 rna ? GO:0003723 ... P20279 12150912
    31796 1m1k:E (3.2) BS01 rna ? GO:0003735 ... P12735 12150912
    31797 1m1k:F (3.2) BS01 rna ? GO:0000049 ... P14124 12150912
    31798 1m1k:F (3.2) BS02 rna ? GO:0000049 ... P14124 12150912
    31799 1m1k:G (3.2) BS01 rna ? GO:0002181 ... P14135 12150912
    31800 1m1k:H (3.2) BS01 rna ? GO:0001682 ... P12743 12150912

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).