SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    32401 1m78:B (1.71) BS01 NDP 1.5.1.3 GO:0004146 ... P22906 9374515
    32402 1m78:B (1.71) BS02 CLZ 1.5.1.3 GO:0004146 ... P22906 9374515 MOAD: ic50=52nM
    32403 1m79:A (1.7) BS01 NDP 1.5.1.3 GO:0004146 ... P22906 9374515
    32404 1m79:A (1.7) BS02 MQ1 1.5.1.3 GO:0004146 ... P22906 9374515 MOAD: ic50=320nM
    32405 1m79:B (1.7) BS01 NDP 1.5.1.3 GO:0004146 ... P22906 9374515
    32406 1m79:B (1.7) BS02 MQ1 1.5.1.3 GO:0004146 ... P22906 9374515 MOAD: ic50=320nM
    32407 1m7a:A (1.76) BS01 NDP 1.5.1.3 GO:0004146 ... P22906 9374515
    32408 1m7a:A (1.76) BS02 MQU 1.5.1.3 GO:0004146 ... P22906 9374515 MOAD: ic50=9nM
    32409 1m7a:B (1.76) BS01 NDP 1.5.1.3 GO:0004146 ... P22906 9374515
    32410 1m7a:B (1.76) BS02 MQU 1.5.1.3 GO:0004146 ... P22906 9374515 MOAD: ic50=9nM
    32411 1m7b:A (2.0) BS01 MG ? GO:0003924 ... P61587 12163169
    32412 1m7b:A (2.0) BS02 GTP ? GO:0003924 ... P61587 12163169
    32413 1m7d:A (2.3) BS01 MAG ? GO:0005576 ... A2NHM3 12427018
    32414 1m7d:B (2.3) BS01 RAE ? GO:0003823 ... P01801 12427018
    32415 1m7e:A (2.45) BS01 peptide ? N/A P98078 12826668
    32416 1m7e:B (2.45) BS01 peptide ? N/A P98078 12826668
    32417 1m7e:C (2.45) BS01 peptide ? N/A P98078 12826668
    32418 1m7g:A (1.43) BS01 SO4 2.7.1.25 GO:0000103 ... Q12657 12427029
    32419 1m7g:A (1.43) BS02 SO4 2.7.1.25 GO:0000103 ... Q12657 12427029
    32420 1m7g:A (1.43) BS03 SO4 2.7.1.25 GO:0000103 ... Q12657 12427029
    32421 1m7g:A (1.43) BS04 AV2 2.7.1.25 GO:0000103 ... Q12657 12427029
    32422 1m7g:A (1.43) BS05 ADX 2.7.1.25 GO:0000103 ... Q12657 12427029
    32423 1m7g:B (1.43) BS01 SO4 2.7.1.25 GO:0000103 ... Q12657 12427029
    32424 1m7g:B (1.43) BS02 ADP 2.7.1.25 GO:0000103 ... Q12657 12427029
    32425 1m7g:B (1.43) BS03 ADX 2.7.1.25 GO:0000103 ... Q12657 12427029
    32426 1m7g:C (1.43) BS01 SO4 2.7.1.25 GO:0000103 ... Q12657 12427029
    32427 1m7g:C (1.43) BS02 SO4 2.7.1.25 GO:0000103 ... Q12657 12427029
    32428 1m7g:C (1.43) BS03 AV2 2.7.1.25 GO:0000103 ... Q12657 12427029
    32429 1m7g:C (1.43) BS04 ADX 2.7.1.25 GO:0000103 ... Q12657 12427029
    32430 1m7g:D (1.43) BS01 ADP 2.7.1.25 GO:0000103 ... Q12657 12427029
    32431 1m7g:D (1.43) BS02 ADX 2.7.1.25 GO:0000103 ... Q12657 12427029
    32432 1m7h:A (2.0) BS01 SO4 2.7.1.25 GO:0000103 ... Q12657 12427029
    32433 1m7h:A (2.0) BS02 ADP 2.7.1.25 GO:0000103 ... Q12657 12427029
    32434 1m7h:B (2.0) BS01 ADP 2.7.1.25 GO:0000103 ... Q12657 12427029
    32435 1m7h:B (2.0) BS02 ADX 2.7.1.25 GO:0000103 ... Q12657 12427029
    32436 1m7h:C (2.0) BS01 SO4 2.7.1.25 GO:0000103 ... Q12657 12427029
    32437 1m7h:C (2.0) BS02 ADP 2.7.1.25 GO:0000103 ... Q12657 12427029
    32438 1m7h:D (2.0) BS01 ADP 2.7.1.25 GO:0000103 ... Q12657 12427029
    32439 1m7h:D (2.0) BS02 ADX 2.7.1.25 GO:0000103 ... Q12657 12427029
    32440 1m7i:B (2.5) BS01 RAM ? GO:0003823 ... P01801 12427018
    32441 1m7j:A (1.5) BS01 ZN 3.5.1.81 GO:0005829 ... Q9AGH8 12454005
    32442 1m7j:A (1.5) BS02 ZN 3.5.1.81 GO:0005829 ... Q9AGH8 12454005
    32443 1m7p:A (2.4) BS01 G3H 5.3.1.1 GO:0004807 ... Q07412 12454456
    32444 1m7p:B (2.4) BS01 G3H 5.3.1.1 GO:0004807 ... Q07412 12454456
    32445 1m7q:A (2.4) BS01 DQO 2.7.11.24 GO:0000165 ... Q16539 12482439 MOAD: ic50=2.6nM
    BindingDB: IC50=2.6nM
    32446 1m7s:A (1.8) BS01 HEM 1.11.1.6 GO:0004096 ... P46206 12557185
    32447 1m7s:B (1.8) BS01 HEM 1.11.1.6 GO:0004096 ... P46206 12557185
    32448 1m7s:C (1.8) BS01 HEM 1.11.1.6 GO:0004096 ... P46206 12557185
    32449 1m7s:D (1.8) BS01 HEM 1.11.1.6 GO:0004096 ... P46206 12557185
    32450 1m7v:A (1.95) BS01 ARG 1.14.14.47 GO:0004517 ... O34453 12220171
    32451 1m7v:A (1.95) BS02 HEM 1.14.14.47 GO:0004517 ... O34453 12220171
    32452 1m7v:A (1.95) BS03 THG 1.14.14.47 GO:0004517 ... O34453 12220171
    32453 1m7y:A (1.6) BS01 PPG 1.4.-.-
    4.4.1.14
    GO:0003824 ... P37821 12228256
    32454 1m7z:A (2.14) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 12220171
    32455 1m7z:A (2.14) BS02 HAR 1.14.14.47 GO:0004517 ... O34453 12220171
    32456 1m7z:A (2.14) BS03 THG 1.14.14.47 GO:0004517 ... O34453 12220171
    32457 1m83:A (2.2) BS01 ATP 6.1.1.2 GO:0000166 ... P00953 12473451 MOAD: Kd=0.4mM
    32458 1m85:A (2.0) BS01 HEM 1.11.1.6 GO:0004096 ... P42321 7791219
    32459 1m8d:A (2.35) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 12437348
    32460 1m8d:A (2.35) BS02 H4B 1.14.13.39 GO:0004517 ... P29477 12437348
    32461 1m8d:A (2.35) BS03 CLW 1.14.13.39 GO:0004517 ... P29477 12437348 MOAD: Kd~4.3uM
    32462 1m8d:B (2.35) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 12437348
    32463 1m8d:B (2.35) BS02 H4B 1.14.13.39 GO:0004517 ... P29477 12437348
    32464 1m8d:B (2.35) BS03 CLW 1.14.13.39 GO:0004517 ... P29477 12437348 MOAD: Kd~4.3uM
    32465 1m8e:A (2.9) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 12437348
    32466 1m8e:A (2.9) BS02 H4B 1.14.13.39 GO:0004517 ... P29477 12437348
    32467 1m8e:A (2.9) BS03 7NI 1.14.13.39 GO:0004517 ... P29477 12437348 BindingDB: IC50=20000nM
    32468 1m8e:B (2.9) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 12437348
    32469 1m8e:B (2.9) BS02 H4B 1.14.13.39 GO:0004517 ... P29477 12437348
    32470 1m8e:B (2.9) BS03 7NI 1.14.13.39 GO:0004517 ... P29477 12437348 BindingDB: IC50=20000nM
    32471 1m8f:A (2.4) BS01 NAD 2.7.7.1 GO:0000309 ... O26253 12810729
    32472 1m8g:A (2.0) BS01 NAD 2.7.7.1 GO:0000309 ... O26253 12810729
    32473 1m8h:A (2.85) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 12437348
    32474 1m8h:A (2.85) BS02 H4B 1.14.13.39 GO:0004517 ... P29477 12437348
    32475 1m8h:A (2.85) BS03 6NI 1.14.13.39 GO:0004517 ... P29477 12437348 BindingDB: IC50=20000nM
    32476 1m8h:B (2.85) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 12437348
    32477 1m8h:B (2.85) BS02 H4B 1.14.13.39 GO:0004517 ... P29477 12437348
    32478 1m8h:B (2.85) BS03 6NI 1.14.13.39 GO:0004517 ... P29477 12437348 BindingDB: IC50=20000nM
    32479 1m8i:A (2.7) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 12437348
    32480 1m8i:A (2.7) BS02 H4B 1.14.13.39 GO:0004517 ... P29477 12437348
    32481 1m8i:A (2.7) BS03 5NI 1.14.13.39 GO:0004517 ... P29477 12437348
    32482 1m8i:B (2.7) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 12437348
    32483 1m8i:B (2.7) BS02 H4B 1.14.13.39 GO:0004517 ... P29477 12437348
    32484 1m8i:B (2.7) BS03 5NI 1.14.13.39 GO:0004517 ... P29477 12437348
    32485 1m8j:A (2.4) BS01 NAD 2.7.7.1 GO:0000309 ... O26253 12810729
    32486 1m8k:A (3.0) BS01 NAD 2.7.7.1 GO:0000309 ... O26253 12810729
    32487 1m8k:B (3.0) BS01 NAD 2.7.7.1 GO:0000309 ... O26253 12810729
    32488 1m8k:C (3.0) BS01 NAD 2.7.7.1 GO:0000309 ... O26253 12810729
    32489 1m8p:A (2.6) BS01 PPS 2.7.7.4 GO:0000103 ... Q12650 12426581
    32490 1m8p:B (2.6) BS01 PPS 2.7.7.4 GO:0000103 ... Q12650 12426581
    32491 1m8p:C (2.6) BS01 PPS 2.7.7.4 GO:0000103 ... Q12650 12426581
    32492 1m8r:A (1.9) BS01 CD 3.1.1.4 GO:0004623 ... O42191 12504079
    32493 1m8s:A (1.9) BS01 CD 3.1.1.4 GO:0004623 ... O42191 12504079
    32494 1m8t:A (2.1) BS01 CA 3.1.1.4 GO:0004623 ... Q9DF33 12925787
    32495 1m8t:B (2.1) BS01 CA 3.1.1.4 GO:0004623 ... Q9DF33 12925787
    32496 1m8t:C (2.1) BS01 CA 3.1.1.4 GO:0004623 ... Q9DF33 12925787
    32497 1m8t:D (2.1) BS01 CA 3.1.1.4 GO:0004623 ... Q9DF33 12925787
    32498 1m8t:E (2.1) BS01 CA 3.1.1.4 GO:0004623 ... Q9DF33 12925787
    32499 1m8t:F (2.1) BS01 CA 3.1.1.4 GO:0004623 ... Q9DF33 12925787
    32500 1m8v:A (2.6) BS01 rna ? GO:0000398 ... Q9V0Y8 12409299
    32501 1m8v:A (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    32502 1m8v:B (2.6) BS01 rna ? GO:0000398 ... Q9V0Y8 12409299
    32503 1m8v:B (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    32504 1m8v:C (2.6) BS01 rna ? GO:0000398 ... Q9V0Y8 12409299
    32505 1m8v:C (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    32506 1m8v:D (2.6) BS01 rna ? GO:0000398 ... Q9V0Y8 12409299
    32507 1m8v:D (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    32508 1m8v:E (2.6) BS01 rna ? GO:0000398 ... Q9V0Y8 12409299
    32509 1m8v:E (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    32510 1m8v:F (2.6) BS01 rna ? GO:0000398 ... Q9V0Y8 12409299
    32511 1m8v:F (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    32512 1m8v:G (2.6) BS01 rna ? GO:0000398 ... Q9V0Y8 12409299
    32513 1m8v:G (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    32514 1m8v:H (2.6) BS01 rna ? GO:0000398 ... Q9V0Y8 12409299
    32515 1m8v:H (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    32516 1m8v:I (2.6) BS01 rna ? GO:0000398 ... Q9V0Y8 12409299
    32517 1m8v:I (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    32518 1m8v:J (2.6) BS01 rna ? GO:0000398 ... Q9V0Y8 12409299
    32519 1m8v:J (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    32520 1m8v:K (2.6) BS01 rna ? GO:0000398 ... Q9V0Y8 12409299
    32521 1m8v:K (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    32522 1m8v:L (2.6) BS01 rna ? GO:0000398 ... Q9V0Y8 12409299
    32523 1m8v:L (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    32524 1m8v:M (2.6) BS01 rna ? GO:0000398 ... Q9V0Y8 12409299
    32525 1m8v:M (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    32526 1m8v:M (2.6) BS03 U ? GO:0000398 ... Q9V0Y8 12409299
    32527 1m8v:N (2.6) BS01 rna ? GO:0000398 ... Q9V0Y8 12409299
    32528 1m8v:N (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    32529 1m8w:A (2.2) BS01 rna ? GO:0003723 ... Q14671 12202039
    32530 1m8w:A (2.2) BS02 rna ? GO:0003723 ... Q14671 12202039
    32531 1m8w:B (2.2) BS01 rna ? GO:0003723 ... Q14671 12202039
    32532 1m8w:B (2.2) BS02 rna ? GO:0003723 ... Q14671 12202039
    32533 1m8x:A (2.2) BS01 rna ? GO:0003723 ... Q14671 12202039
    32534 1m8x:B (2.2) BS01 rna ? GO:0003723 ... Q14671 12202039
    32535 1m8y:A (2.6) BS01 rna ? GO:0003723 ... Q14671 12202039
    32536 1m8y:B (2.6) BS01 rna ? GO:0003723 ... Q14671 12202039
    32537 1m90:1 (2.8) BS01 rna ? GO:0003735 ... P60619 12185246
    32538 1m90:2 (2.8) BS01 rna ? GO:0003723 ... P32410 12185246
    32539 1m90:3 (2.8) BS01 rna ? GO:0003735 ... P22452 12185246
    32540 1m90:4 (2.8) BS01 rna ? GO:0003735 ... P32411 12185246
    32541 1m90:4 (2.8) BS02 MG ? GO:0003735 ... P32411 12185246
    32542 1m90:C (2.8) BS01 rna ? GO:0002181 ... P20276 12185246
    32543 1m90:D (2.8) BS01 rna ? GO:0003723 ... P20279 12185246
    32544 1m90:E (2.8) BS01 rna ? GO:0003735 ... P12735 12185246
    32545 1m90:F (2.8) BS01 rna ? GO:0000049 ... P14124 12185246
    32546 1m90:F (2.8) BS02 rna ? GO:0000049 ... P14124 12185246
    32547 1m90:G (2.8) BS01 rna ? GO:0002181 ... P14135 12185246
    32548 1m90:H (2.8) BS01 rna ? GO:0001682 ... P12743 12185246
    32549 1m90:J (2.8) BS01 rna ? GO:0003735 ... P60617 12185246
    32550 1m90:K (2.8) BS01 rna ? GO:0003729 ... P29198 12185246
    32551 1m90:L (2.8) BS01 rna ? GO:0003735 ... P22450 12185246
    32552 1m90:M (2.8) BS01 rna ? GO:0003735 ... P12737 12185246
    32553 1m90:N (2.8) BS01 rna ? GO:0002181 ... P60618 12185246
    32554 1m90:O (2.8) BS01 rna ? GO:0000027 ... P14123 12185246
    32555 1m90:O (2.8) BS02 rna ? GO:0000027 ... P14123 12185246
    32556 1m90:P (2.8) BS01 rna ? GO:0003723 ... P12733 12185246
    32557 1m90:Q (2.8) BS01 rna ? GO:0003723 ... P14119 12185246
    32558 1m90:R (2.8) BS01 rna ? GO:0003735 ... P12734 12185246
    32559 1m90:R (2.8) BS02 rna ? GO:0003735 ... P12734 12185246
    32560 1m90:S (2.8) BS01 rna ? GO:0002181 ... P10970 12185246
    32561 1m90:T (2.8) BS01 rna ? GO:0003735 ... P12732 12185246
    32562 1m90:U (2.8) BS01 rna ? GO:0003723 ... P10972 12185246
    32563 1m90:U (2.8) BS02 MG ? GO:0003723 ... P10972 12185246
    32564 1m90:V (2.8) BS01 rna ? GO:0003735 ... P14116 12185246
    32565 1m90:W (2.8) BS01 rna ? GO:0003735 ... P10971 12185246
    32566 1m90:X (2.8) BS01 rna ? GO:0000463 ... P14121 12185246
    32567 1m90:X (2.8) BS02 rna ? GO:0000463 ... P14121 12185246
    32568 1m90:Y (2.8) BS01 rna ? GO:0002181 ... P18138 12185246
    32569 1m90:Z (2.8) BS01 rna ? GO:0000166 ... P12736 12185246
    32570 1m90:Z (2.8) BS02 MG ? GO:0000166 ... P12736 12185246
    32571 1m99:A (2.3) BS01 GTS 2.5.1.18 GO:0004364 ... P08515 12596270
    32572 1m9a:A (2.1) BS01 GTX 2.5.1.18 GO:0004364 ... P08515 12596270
    32573 1m9b:A (2.6) BS01 IBG 2.5.1.18 GO:0004364 ... P08515 12596270
    32574 1m9h:A (2.0) BS01 NAD 1.1.1.346 GO:0005737 ... P06632 14718658
    32575 1m9i:A (2.65) BS01 CA ? GO:0001786 ... P08133 12534274
    32576 1m9i:A (2.65) BS02 CA ? GO:0001786 ... P08133 12534274
    32577 1m9i:A (2.65) BS03 CA ? GO:0001786 ... P08133 12534274
    32578 1m9i:A (2.65) BS04 CA ? GO:0001786 ... P08133 12534274
    32579 1m9i:A (2.65) BS05 CA ? GO:0001786 ... P08133 12534274
    32580 1m9j:A (2.43) BS01 ZN 1.14.13.39 GO:0004517 ... P29474 12437348
    32581 1m9j:A (2.43) BS02 HEM 1.14.13.39 GO:0004517 ... P29474 12437348
    32582 1m9j:A (2.43) BS03 CLW 1.14.13.39 GO:0004517 ... P29474 12437348 MOAD: Kd~0.6uM
    BindingDB: IC50=8700nM
    32583 1m9j:B (2.43) BS01 ZN 1.14.13.39 GO:0004517 ... P29474 12437348
    32584 1m9j:B (2.43) BS02 HEM 1.14.13.39 GO:0004517 ... P29474 12437348
    32585 1m9j:B (2.43) BS03 CLW 1.14.13.39 GO:0004517 ... P29474 12437348 MOAD: Kd~0.6uM
    BindingDB: IC50=8700nM
    32586 1m9k:A (2.01) BS01 ZN 1.14.13.39 GO:0004517 ... P29474 12437348
    32587 1m9k:A (2.01) BS02 HEM 1.14.13.39 GO:0004517 ... P29474 12437348
    32588 1m9k:A (2.01) BS03 7NI 1.14.13.39 GO:0004517 ... P29474 12437348 MOAD: Kd~250uM
    BindingDB: IC50=2500nM
    32589 1m9k:B (2.01) BS01 ZN 1.14.13.39 GO:0004517 ... P29474 12437348
    32590 1m9k:B (2.01) BS02 HEM 1.14.13.39 GO:0004517 ... P29474 12437348
    32591 1m9k:B (2.01) BS03 7NI 1.14.13.39 GO:0004517 ... P29474 12437348 MOAD: Kd~250uM
    BindingDB: IC50=2500nM
    32592 1m9m:A (1.96) BS01 ZN 1.14.13.39 GO:0004517 ... P29474 12437348
    32593 1m9m:A (1.96) BS02 HEM 1.14.13.39 GO:0004517 ... P29474 12437348
    32594 1m9m:A (1.96) BS03 6NI 1.14.13.39 GO:0004517 ... P29474 12437348
    32595 1m9m:B (1.96) BS01 ZN 1.14.13.39 GO:0004517 ... P29474 12437348
    32596 1m9m:B (1.96) BS02 HEM 1.14.13.39 GO:0004517 ... P29474 12437348
    32597 1m9m:B (1.96) BS03 6NI 1.14.13.39 GO:0004517 ... P29474 12437348
    32598 1m9n:A (1.93) BS01 AMZ 2.1.2.3
    3.5.4.10
    GO:0003937 ... P31335 12501179
    32599 1m9n:A (1.93) BS02 XMP 2.1.2.3
    3.5.4.10
    GO:0003937 ... P31335 12501179 MOAD: Ki=0.12uM
    32600 1m9n:A (1.93) BS03 AMZ 2.1.2.3
    3.5.4.10
    GO:0003937 ... P31335 12501179

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).