SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    326001 5b66:b (1.85) BS15 CLA ? GO:0009521 ... D0VWR1 28102667
    326002 5b66:b (1.85) BS16 CLA ? GO:0009521 ... D0VWR1 28102667
    326003 5b66:c (1.85) BS01 OEX ? GO:0005737 ... D0VWR7 28102667
    326004 5b66:c (1.85) BS02 CLA ? GO:0005737 ... D0VWR7 28102667
    326005 5b66:c (1.85) BS03 CLA ? GO:0005737 ... D0VWR7 28102667
    326006 5b66:c (1.85) BS04 CLA ? GO:0005737 ... D0VWR7 28102667
    326007 5b66:c (1.85) BS05 CLA ? GO:0005737 ... D0VWR7 28102667
    326008 5b66:c (1.85) BS06 CLA ? GO:0005737 ... D0VWR7 28102667
    326009 5b66:c (1.85) BS07 CLA ? GO:0005737 ... D0VWR7 28102667
    326010 5b66:c (1.85) BS08 CLA ? GO:0005737 ... D0VWR7 28102667
    326011 5b66:c (1.85) BS09 CLA ? GO:0005737 ... D0VWR7 28102667
    326012 5b66:c (1.85) BS10 CLA ? GO:0005737 ... D0VWR7 28102667
    326013 5b66:c (1.85) BS11 CLA ? GO:0005737 ... D0VWR7 28102667
    326014 5b66:c (1.85) BS12 CLA ? GO:0005737 ... D0VWR7 28102667
    326015 5b66:c (1.85) BS13 CLA ? GO:0005737 ... D0VWR7 28102667
    326016 5b66:c (1.85) BS14 CLA ? GO:0005737 ... D0VWR7 28102667
    326017 5b66:c (1.85) BS15 CA ? GO:0005737 ... D0VWR7 28102667
    326018 5b66:d (1.85) BS01 CLA 1.10.3.9 GO:0005737 ... D0VWR8 28102667
    326019 5b66:d (1.85) BS02 PHO 1.10.3.9 GO:0005737 ... D0VWR8 28102667
    326020 5b66:d (1.85) BS03 PHO 1.10.3.9 GO:0005737 ... D0VWR8 28102667
    326021 5b66:d (1.85) BS04 BCT 1.10.3.9 GO:0005737 ... D0VWR8 28102667
    326022 5b66:d (1.85) BS05 FE2 1.10.3.9 GO:0005737 ... D0VWR8 28102667
    326023 5b66:d (1.85) BS06 CLA 1.10.3.9 GO:0005737 ... D0VWR8 28102667
    326024 5b66:d (1.85) BS07 CLA 1.10.3.9 GO:0005737 ... D0VWR8 28102667
    326025 5b66:d (1.85) BS08 CLA 1.10.3.9 GO:0005737 ... D0VWR8 28102667
    326026 5b66:d (1.85) BS09 CLA 1.10.3.9 GO:0005737 ... D0VWR8 28102667
    326027 5b66:e (1.85) BS01 HEM ? GO:0005506 ... P12238 28102667
    326028 5b66:f (1.85) BS01 HEM ? GO:0005506 ... P12239 28102667
    326029 5b66:h (1.85) BS01 CLA ? GO:0009523 ... P19052 28102667
    326030 5b66:h (1.85) BS02 CLA ? GO:0009523 ... P19052 28102667
    326031 5b66:h (1.85) BS03 CLA ? GO:0009523 ... P19052 28102667
    326032 5b66:h (1.85) BS04 RRX ? GO:0009523 ... P19052 28102667
    326033 5b66:i (1.85) BS01 CLA ? GO:0005737 ... P12240 28102667
    326034 5b66:j (1.85) BS01 MG ? GO:0009523 ... Q7DGD4 28102667
    326035 5b66:k (1.85) BS01 peptide ? GO:0005737 ... P19054 28102667
    326036 5b66:k (1.85) BS02 CLA ? GO:0005737 ... P19054 28102667
    326037 5b66:k (1.85) BS03 CLA ? GO:0005737 ... P19054 28102667
    326038 5b66:o (1.85) BS01 CA ? GO:0009523 ... D0VWR2 28102667
    326039 5b66:v (1.85) BS01 HEC ? GO:0005506 ... P0A387 28102667
    326040 5b66:x (1.85) BS01 CLA ? GO:0009523 ... D0VWR4 28102667
    326041 5b66:x (1.85) BS02 RRX ? GO:0009523 ... D0VWR4 28102667
    326042 5b66:z (1.85) BS01 peptide ? GO:0009523 ... D0VWR5 28102667
    326043 5b66:z (1.85) BS02 CLA ? GO:0009523 ... D0VWR5 28102667
    326044 5b68:A (1.7) BS01 SO4 2.4.1.25 GO:0004134 ... Q8NNA7 27366969
    326045 5b68:A (1.7) BS02 SO4 2.4.1.25 GO:0004134 ... Q8NNA7 27366969
    326046 5b68:A (1.7) BS03 SO4 2.4.1.25 GO:0004134 ... Q8NNA7 27366969
    326047 5b68:A (1.7) BS04 SO4 2.4.1.25 GO:0004134 ... Q8NNA7 27366969
    326048 5b68:A (1.7) BS05 SO4 2.4.1.25 GO:0004134 ... Q8NNA7 27366969
    326049 5b68:A (1.7) BS06 SO4 2.4.1.25 GO:0004134 ... Q8NNA7 27366969
    326050 5b6a:A (2.0) BS01 PO4 2.7.1.35 GO:0000287 ... Q9HT57 27425248
    326051 5b6b:A (3.536) BS01 ZN ? GO:0005634 ... Q8BPB0 27335147
    326052 5b6b:B (3.536) BS01 ZN ? GO:0005634 ... Q8BPB0 27335147
    326053 5b6b:D (3.536) BS01 ZN ? GO:0005634 ... Q8BPB0 27335147
    326054 5b6b:F (3.536) BS01 ZN ? GO:0005634 ... Q8BPB0 27335147
    326055 5b6b:H (3.536) BS01 ZN ? GO:0005634 ... Q8BPB0 27335147
    326056 5b6b:K (3.536) BS01 ZN ? GO:0005634 ... Q8BPB0 27335147
    326057 5b6b:M (3.536) BS01 ZN ? GO:0005634 ... Q8BPB0 27335147
    326058 5b6b:O (3.536) BS01 ZN ? GO:0005634 ... Q8BPB0 27335147
    326059 5b6c:A (1.55) BS01 peptide 3.6.4.6 N/A P55072 27684549
    326060 5b6d:A (1.65) BS01 C5P ? GO:0004799 ... B4Y380 28000775
    326061 5b6d:A (1.65) BS02 C5P ? GO:0004799 ... B4Y380 28000775
    326062 5b6d:B (1.65) BS01 C5P ? GO:0004799 ... B4Y380 28000775
    326063 5b6d:B (1.65) BS02 C5P ? GO:0004799 ... B4Y380 28000775
    326064 5b6e:A (1.8) BS01 5HM ? GO:0004799 ... B4Y380 28000775
    326065 5b6e:A (1.8) BS02 5HM ? GO:0004799 ... B4Y380 28000775
    326066 5b6e:B (1.8) BS01 5HM ? GO:0004799 ... B4Y380 28000775
    326067 5b6e:B (1.8) BS02 5HM ? GO:0004799 ... B4Y380 28000775
    326068 5b6f:A (2.1) BS01 LTX N/A N/A N/A N/A
    326069 5b6f:B (2.1) BS01 LTX N/A N/A N/A N/A
    326070 5b6f:C (2.1) BS01 LTX N/A N/A N/A N/A
    326071 5b6f:D (2.1) BS01 LTX N/A N/A N/A N/A
    326072 5b6f:E (2.1) BS01 LTX N/A N/A N/A N/A
    326073 5b6f:F (2.1) BS01 LTX N/A N/A N/A N/A
    326074 5b6f:G (2.1) BS01 LTX N/A N/A N/A N/A
    326075 5b6f:H (2.1) BS01 LTX N/A N/A N/A N/A
    326076 5b6g:A (1.99) BS01 peptide ? GO:0008013 ... P25054 28759015
    326077 5b6h:A (1.9) BS01 AMP 2.4.2.7 GO:0003999 ... Q66DQ2 N/A
    326078 5b6i:A (1.95) BS01 MET 2.5.1.63
    2.5.1.94
    3.13.2.3
    GO:0016740 ... W0W999 27739177
    326079 5b6i:A (1.95) BS02 ADN 2.5.1.63
    2.5.1.94
    3.13.2.3
    GO:0016740 ... W0W999 27739177
    326080 5b6i:B (1.95) BS01 MET 2.5.1.63
    2.5.1.94
    3.13.2.3
    GO:0016740 ... W0W999 27739177
    326081 5b6i:B (1.95) BS02 ADN 2.5.1.63
    2.5.1.94
    3.13.2.3
    GO:0016740 ... W0W999 27739177
    326082 5b6l:A (2.801) BS01 peptide ? GO:0004252 ... P72780 27616292
    326083 5b6p:B (2.0) BS01 SO4 4.2.1.10 GO:0003855 ... A3M692 27769928
    326084 5b6p:C (2.0) BS01 SO4 4.2.1.10 GO:0003855 ... A3M692 27769928
    326085 5b6p:G (2.0) BS01 SO4 4.2.1.10 GO:0003855 ... A3M692 27769928
    326086 5b6q:A (1.78) BS01 HEC ? GO:0005506 ... D4ZE39 27648635
    326087 5b6q:B (1.78) BS01 HEC ? GO:0005506 ... D4ZE39 27648635
    326088 5b6v:A (2.0) BS01 RET ? GO:0005216 ... P02945 28008064
    326089 5b6w:A (2.1) BS01 RET ? GO:0005216 ... P02945 28008064
    326090 5b6x:A (2.1) BS01 RET ? GO:0005216 ... P02945 28008064
    326091 5b6y:A (2.1) BS01 RET ? GO:0005216 ... P02945 28008064
    326092 5b6z:A (2.1) BS01 RET ? GO:0005216 ... P02945 28008064
    326093 5b72:A (1.98) BS01 OSM 1.11.1.7 GO:0004601 ... P80025 27986533
    326094 5b72:A (1.98) BS02 CA 1.11.1.7 GO:0004601 ... P80025 27986533
    326095 5b72:A (1.98) BS03 HEM 1.11.1.7 GO:0004601 ... P80025 27986533
    326096 5b73:A (1.8) BS01 ZN ? GO:0006355 ... Q9ULU4 27477906
    326097 5b73:A (1.8) BS02 ZN ? GO:0006355 ... Q9ULU4 27477906
    326098 5b73:A (1.8) BS03 ZN ? GO:0006355 ... Q9ULU4 27477906
    326099 5b74:B (2.039) BS01 peptide 3.5.1.1 N/A Q8TZE8 33303914
    326100 5b75:A (1.704) BS01 peptide 2.3.1.48 N/A Q92794 27775714
    326101 5b75:A (1.704) BS02 ZN 2.3.1.48 N/A Q92794 27775714
    326102 5b75:A (1.704) BS03 ZN 2.3.1.48 N/A Q92794 27775714
    326103 5b75:A (1.704) BS04 ZN 2.3.1.48 N/A Q92794 27775714
    326104 5b75:A (1.704) BS05 ZN 2.3.1.48 N/A Q92794 27775714
    326105 5b76:A (1.653) BS01 peptide 2.3.1.48 N/A Q92794 27775714
    326106 5b76:A (1.653) BS02 ZN 2.3.1.48 N/A Q92794 27775714
    326107 5b76:A (1.653) BS03 ZN 2.3.1.48 N/A Q92794 27775714
    326108 5b76:A (1.653) BS04 ZN 2.3.1.48 N/A Q92794 27775714
    326109 5b76:A (1.653) BS05 ZN 2.3.1.48 N/A Q92794 27775714
    326110 5b77:A (1.551) BS01 peptide 2.3.1.48 N/A Q92794 27775714
    326111 5b77:A (1.551) BS02 ZN 2.3.1.48 N/A Q92794 27775714
    326112 5b77:A (1.551) BS03 ZN 2.3.1.48 N/A Q92794 27775714
    326113 5b77:A (1.551) BS04 ZN 2.3.1.48 N/A Q92794 27775714
    326114 5b77:A (1.551) BS05 ZN 2.3.1.48 N/A Q92794 27775714
    326115 5b78:A (1.4) BS01 peptide 2.3.1.48 N/A Q92794 27775714
    326116 5b78:A (1.4) BS02 ZN 2.3.1.48 N/A Q92794 27775714
    326117 5b78:A (1.4) BS03 ZN 2.3.1.48 N/A Q92794 27775714
    326118 5b78:A (1.4) BS04 ZN 2.3.1.48 N/A Q92794 27775714
    326119 5b78:A (1.4) BS05 ZN 2.3.1.48 N/A Q92794 27775714
    326120 5b79:A (2.601) BS01 ZN ? N/A Q92785 27775714
    326121 5b79:A (2.601) BS02 ZN ? N/A Q92785 27775714
    326122 5b79:A (2.601) BS03 ZN ? N/A Q92785 27775714
    326123 5b79:A (2.601) BS04 ZN ? N/A Q92785 27775714
    326124 5b7b:A (3.0) BS01 NUZ ? GO:0003723 ... P15682 27404920
    326125 5b7b:C (3.0) BS01 NUZ ? GO:0003723 ... P15682 27404920
    326126 5b7b:D (3.0) BS01 NUZ ? GO:0003723 ... P15682 27404920
    326127 5b7c:A (2.35) BS01 GSH ? GO:0004364 ... A0A1C7D1H4 27499004
    326128 5b7e:A (1.42) BS01 CU 1.16.3.4 GO:0005507 ... P36649 27710945
    326129 5b7e:A (1.42) BS02 CU 1.16.3.4 GO:0005507 ... P36649 27710945
    326130 5b7f:A (1.45) BS01 CU 1.16.3.4 GO:0004322 ... P36649 27710945
    326131 5b7f:A (1.45) BS02 CU 1.16.3.4 GO:0004322 ... P36649 27710945
    326132 5b7f:A (1.45) BS03 CU 1.16.3.4 GO:0004322 ... P36649 27710945
    326133 5b7f:A (1.45) BS04 CU 1.16.3.4 GO:0004322 ... P36649 27710945
    326134 5b7g:A (1.399) BS01 ADE 3.2.2.16
    3.2.2.9
    GO:0003824 ... A0KGU9 28862845
    326135 5b7g:B (1.399) BS01 ADE 3.2.2.16
    3.2.2.9
    GO:0003824 ... A0KGU9 28862845
    326136 5b7i:A (2.6) BS01 CA 3.1.-.-
    3.6.4.-
    GO:0004386 ... Q02ML8 27455460
    326137 5b7i:A (2.6) BS02 CA 3.1.-.-
    3.6.4.-
    GO:0004386 ... Q02ML8 27455460
    326138 5b7i:A (2.6) BS03 ADP 3.1.-.-
    3.6.4.-
    GO:0004386 ... Q02ML8 27455460
    326139 5b7j:A (-1.00) BS01 dna ? GO:0003677 ... P40847 28223353
    326140 5b7j:A (-1.00) BS02 dna ? GO:0003677 ... P40847 28223353
    326141 5b7m:A (1.8) BS01 CU 1.16.3.4 GO:0004322 ... P36649 27710945
    326142 5b7m:A (1.8) BS02 CU 1.16.3.4 GO:0004322 ... P36649 27710945
    326143 5b7m:A (1.8) BS03 CU 1.16.3.4 GO:0004322 ... P36649 27710945
    326144 5b7m:A (1.8) BS04 CU 1.16.3.4 GO:0004322 ... P36649 27710945
    326145 5b7m:B (1.8) BS01 CU 1.16.3.4 GO:0004322 ... P36649 27710945
    326146 5b7m:B (1.8) BS02 CU 1.16.3.4 GO:0004322 ... P36649 27710945
    326147 5b7m:B (1.8) BS03 CU 1.16.3.4 GO:0004322 ... P36649 27710945
    326148 5b7m:B (1.8) BS04 CU 1.16.3.4 GO:0004322 ... P36649 27710945
    326149 5b7m:C (1.8) BS01 CU 1.16.3.4 GO:0004322 ... P36649 27710945
    326150 5b7m:C (1.8) BS02 CU 1.16.3.4 GO:0004322 ... P36649 27710945
    326151 5b7m:C (1.8) BS03 CU 1.16.3.4 GO:0004322 ... P36649 27710945
    326152 5b7m:C (1.8) BS04 CU 1.16.3.4 GO:0004322 ... P36649 27710945
    326153 5b7n:A (1.399) BS01 SAH 3.2.2.16
    3.2.2.9
    GO:0003824 ... A0KGU9 28862845
    326154 5b7n:B (1.399) BS01 SAH 3.2.2.16
    3.2.2.9
    GO:0003824 ... A0KGU9 28862845
    326155 5b7p:A (1.49) BS01 MTA 3.2.2.16
    3.2.2.9
    GO:0003824 ... A0KGU9 28862845
    326156 5b7p:B (1.49) BS01 MTA 3.2.2.16
    3.2.2.9
    GO:0003824 ... A0KGU9 28862845
    326157 5b7u:A (1.9) BS01 CYS 2.8.1.7 GO:0006534 ... B6YT87 28536498
    326158 5b7u:B (1.9) BS01 CYS 2.8.1.7 GO:0006534 ... B6YT87 28536498
    326159 5b7v:A (2.15) BS01 LWJ 2.7.10.1 GO:0004672 ... P11362 25169980 MOAD: ic50=9.3nM
    BindingDB: IC50=9.3nM
    326160 5b7v:B (2.15) BS01 LWJ 2.7.10.1 GO:0004672 ... P11362 25169980 MOAD: ic50=9.3nM
    BindingDB: IC50=9.3nM
    326161 5b7x:A (-1.00) BS01 CA ? GO:0005509 ... M7WXJ8 N/A
    326162 5b7x:A (-1.00) BS02 CA ? GO:0005509 ... M7WXJ8 N/A
    326163 5b7y:A (1.32) BS01 CO 5.1.3.-
    5.3.1.-
    GO:0006020 ... Q9WYP7 28258150
    326164 5b7y:B (1.32) BS01 CO 5.1.3.-
    5.3.1.-
    GO:0006020 ... Q9WYP7 28258150
    326165 5b80:A (1.7) BS01 CU 5.1.3.-
    5.3.1.-
    GO:0006020 ... Q9WYP7 28258150
    326166 5b80:B (1.7) BS01 CU 5.1.3.-
    5.3.1.-
    GO:0006020 ... Q9WYP7 28258150
    326167 5b82:A (2.0) BS01 HEC ? N/A Q8DM36 28428249
    326168 5b84:A (1.61) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 27476534
    326169 5b85:A (1.85) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 27476534
    326170 5b87:A (2.28) BS01 PLP 2.8.1.7 GO:0006534 ... B6YT87 28536498
    326171 5b87:A (2.28) BS02 ALA 2.8.1.7 GO:0006534 ... B6YT87 28536498
    326172 5b87:B (2.28) BS01 PLP 2.8.1.7 GO:0006534 ... B6YT87 28536498
    326173 5b87:B (2.28) BS02 PLP 2.8.1.7 GO:0006534 ... B6YT87 28536498
    326174 5b87:B (2.28) BS03 ALA 2.8.1.7 GO:0006534 ... B6YT87 28536498
    326175 5b89:A (1.5) BS01 ALA 2.8.1.7 GO:0006534 ... B6YT87 28536498
    326176 5b89:A (1.5) BS02 PLP 2.8.1.7 GO:0006534 ... B6YT87 28536498
    326177 5b89:A (1.5) BS03 PLP 2.8.1.7 GO:0006534 ... B6YT87 28536498
    326178 5b89:B (1.5) BS01 PLP 2.8.1.7 GO:0006534 ... B6YT87 28536498
    326179 5b89:B (1.5) BS02 PLP 2.8.1.7 GO:0006534 ... B6YT87 28536498
    326180 5b89:B (1.5) BS03 ALA 2.8.1.7 GO:0006534 ... B6YT87 28536498
    326181 5b8d:A (1.05) BS01 ZN 3.5.1.-
    3.5.1.98
    GO:0008270 ... Q9UBN7 29019676
    326182 5b8d:A (1.05) BS02 ZN 3.5.1.-
    3.5.1.98
    GO:0008270 ... Q9UBN7 29019676
    326183 5b8d:A (1.05) BS03 ZN 3.5.1.-
    3.5.1.98
    GO:0008270 ... Q9UBN7 29019676
    326184 5b8d:A (1.05) BS04 6T4 3.5.1.-
    3.5.1.98
    GO:0008270 ... Q9UBN7 29019676
    326185 5b8f:A (1.45) BS01 MG 4.6.1.12 GO:0008299 ... P57708 N/A
    326186 5b8f:A (1.45) BS02 C5P 4.6.1.12 GO:0008299 ... P57708 N/A
    326187 5b8f:A (1.45) BS03 C5P 4.6.1.12 GO:0008299 ... P57708 N/A
    326188 5b8f:B (1.45) BS01 MG 4.6.1.12 GO:0008299 ... P57708 N/A
    326189 5b8f:B (1.45) BS02 C5P 4.6.1.12 GO:0008299 ... P57708 N/A
    326190 5b8f:C (1.45) BS01 MG 4.6.1.12 GO:0008299 ... P57708 N/A
    326191 5b8f:C (1.45) BS02 C5P 4.6.1.12 GO:0008299 ... P57708 N/A
    326192 5b8h:A (2.1999) BS01 2PN 2.7.1.33 GO:0004594 ... B4E9P3 N/A
    326193 5b8h:A (2.1999) BS02 PAU 2.7.1.33 GO:0004594 ... B4E9P3 N/A
    326194 5b8h:A (2.1999) BS03 AMP 2.7.1.33 GO:0004594 ... B4E9P3 N/A
    326195 5b8h:A (2.1999) BS04 PAU 2.7.1.33 GO:0004594 ... B4E9P3 N/A
    326196 5b8h:B (2.1999) BS01 PAU 2.7.1.33 GO:0004594 ... B4E9P3 N/A
    326197 5b8h:B (2.1999) BS02 2PN 2.7.1.33 GO:0004594 ... B4E9P3 N/A
    326198 5b8h:B (2.1999) BS03 PAU 2.7.1.33 GO:0004594 ... B4E9P3 N/A
    326199 5b8i:A (1.85) BS01 ZN 3.1.3.16 GO:0016787 ... J3K8M7 31537789
    326200 5b8i:A (1.85) BS02 FE 3.1.3.16 GO:0016787 ... J3K8M7 31537789

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).