SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    328801 5caw:C (2.62) BS07 ZN 2.3.2.31 GO:0004842 ... E0VIU9 26161729
    328802 5caw:C (2.62) BS08 ZN 2.3.2.31 GO:0004842 ... E0VIU9 26161729
    328803 5cax:A (2.451) BS01 CD ? GO:0009055 ... Q8TQ93 26684934
    328804 5cax:A (2.451) BS02 CD ? GO:0009055 ... Q8TQ93 26684934
    328805 5cax:B (2.451) BS01 CD ? GO:0009055 ... Q8TQ93 26684934
    328806 5cax:B (2.451) BS02 CD ? GO:0009055 ... Q8TQ93 26684934
    328807 5cax:B (2.451) BS03 CD ? GO:0009055 ... Q8TQ93 26684934
    328808 5cax:C (2.451) BS01 CD ? GO:0009055 ... Q8TQ93 26684934
    328809 5cax:D (2.451) BS01 CD ? GO:0009055 ... Q8TQ93 26684934
    328810 5cax:D (2.451) BS02 CD ? GO:0009055 ... Q8TQ93 26684934
    328811 5cb0:A (3.207) BS01 Z6X ? GO:0005737 ... P0AAC0 26865045
    328812 5cb0:B (3.207) BS01 Z6X ? GO:0005737 ... P0AAC0 26865045
    328813 5cb2:A (2.9) BS01 MG 3.6.5.- GO:0005525 ... Q9C0L9 26370501
    328814 5cb2:A (2.9) BS02 GNP 3.6.5.- GO:0005525 ... Q9C0L9 26370501
    328815 5cb3:A (1.8) BS01 APR 3.1.1.106 GO:0001883 ... P0A8D6 26481419
    328816 5cb4:A (2.193) BS01 GTP ? GO:0005200 ... A0A0R4I993 26462166
    328817 5cb4:A (2.193) BS02 CA ? GO:0005200 ... A0A0R4I993 26462166
    328818 5cb4:A (2.193) BS03 TIV ? GO:0005200 ... A0A0R4I993 26462166
    328819 5cb4:B (2.193) BS01 GDP ? GO:0003924 ... A0A0R4I995 26462166
    328820 5cb4:B (2.193) BS02 TIV ? GO:0003924 ... A0A0R4I995 26462166
    328821 5cb4:C (2.193) BS01 GTP ? GO:0005200 ... A0A0R4I993 26462166
    328822 5cb4:C (2.193) BS02 CA ? GO:0005200 ... A0A0R4I993 26462166
    328823 5cb4:C (2.193) BS03 TIV ? GO:0005200 ... A0A0R4I993 26462166
    328824 5cb4:D (2.193) BS01 GDP ? GO:0003924 ... A0A0R4I995 26462166
    328825 5cb4:D (2.193) BS02 TIV ? GO:0003924 ... A0A0R4I995 26462166
    328826 5cb4:F (2.193) BS01 ACP N/A GO:0036211 ... N/A 26462166
    328827 5cb5:A (2.8) BS01 APR 3.1.1.106 GO:0001883 ... P0A8D6 26481419
    328828 5cb5:B (2.8) BS01 APR 3.1.1.106 GO:0001883 ... P0A8D6 26481419
    328829 5cb5:C (2.8) BS01 APR 3.1.1.106 GO:0001883 ... P0A8D6 26481419
    328830 5cb5:D (2.8) BS01 APR 3.1.1.106 GO:0001883 ... P0A8D6 26481419
    328831 5cb5:E (2.8) BS01 APR 3.1.1.106 GO:0001883 ... P0A8D6 26481419
    328832 5cb5:F (2.8) BS01 ZOD 3.1.1.106 GO:0001883 ... P0A8D6 26481419
    328833 5cb5:G (2.8) BS01 APR 3.1.1.106 GO:0001883 ... P0A8D6 26481419
    328834 5cb5:H (2.8) BS01 APR 3.1.1.106 GO:0001883 ... P0A8D6 26481419
    328835 5cb5:I (2.8) BS01 APR 3.1.1.106 GO:0001883 ... P0A8D6 26481419
    328836 5cb5:J (2.8) BS01 APR 3.1.1.106 GO:0001883 ... P0A8D6 26481419
    328837 5cb5:K (2.8) BS01 APR 3.1.1.106 GO:0001883 ... P0A8D6 26481419
    328838 5cb5:L (2.8) BS01 APR 3.1.1.106 GO:0001883 ... P0A8D6 26481419
    328839 5cb5:M (2.8) BS01 ZOD 3.1.1.106 GO:0001883 ... P0A8D6 26481419
    328840 5cb5:N (2.8) BS01 APR 3.1.1.106 GO:0001883 ... P0A8D6 26481419
    328841 5cb5:O (2.8) BS01 APR 3.1.1.106 GO:0001883 ... P0A8D6 26481419
    328842 5cb5:P (2.8) BS01 APR 3.1.1.106 GO:0001883 ... P0A8D6 26481419
    328843 5cb5:Q (2.8) BS01 APR 3.1.1.106 GO:0001883 ... P0A8D6 26481419
    328844 5cb5:R (2.8) BS01 APR 3.1.1.106 GO:0001883 ... P0A8D6 26481419
    328845 5cb6:A (2.79) BS01 ADX 2.7.1.25 GO:0000103 ... P72940 26294763
    328846 5cb6:A (2.79) BS02 ANP 2.7.1.25 GO:0000103 ... P72940 26294763
    328847 5cb6:A (2.79) BS03 MG 2.7.1.25 GO:0000103 ... P72940 26294763
    328848 5cb6:B (2.79) BS01 ADX 2.7.1.25 GO:0000103 ... P72940 26294763
    328849 5cb6:B (2.79) BS02 ANP 2.7.1.25 GO:0000103 ... P72940 26294763
    328850 5cb6:C (2.79) BS01 ADX 2.7.1.25 GO:0000103 ... P72940 26294763
    328851 5cb6:C (2.79) BS02 ANP 2.7.1.25 GO:0000103 ... P72940 26294763
    328852 5cb6:C (2.79) BS03 MG 2.7.1.25 GO:0000103 ... P72940 26294763
    328853 5cb6:D (2.79) BS01 ADX 2.7.1.25 GO:0000103 ... P72940 26294763
    328854 5cb6:D (2.79) BS02 ANP 2.7.1.25 GO:0000103 ... P72940 26294763
    328855 5cb6:D (2.79) BS03 MG 2.7.1.25 GO:0000103 ... P72940 26294763
    328856 5cb6:E (2.79) BS01 ADX 2.7.1.25 GO:0000103 ... P72940 26294763
    328857 5cb6:E (2.79) BS02 ANP 2.7.1.25 GO:0000103 ... P72940 26294763
    328858 5cb6:E (2.79) BS03 MG 2.7.1.25 GO:0000103 ... P72940 26294763
    328859 5cb6:F (2.79) BS01 ADX 2.7.1.25 GO:0000103 ... P72940 26294763
    328860 5cb6:F (2.79) BS02 ANP 2.7.1.25 GO:0000103 ... P72940 26294763
    328861 5cb6:F (2.79) BS03 MG 2.7.1.25 GO:0000103 ... P72940 26294763
    328862 5cb7:B (1.35) BS01 GAL ? GO:0019028 ... Q01641 26250751
    328863 5cb8:A (1.88) BS01 ADX 2.7.1.25 GO:0000103 ... P72940 26294763 MOAD: Ki=18.2uM
    328864 5cb8:A (1.88) BS02 SO4 2.7.1.25 GO:0000103 ... P72940 26294763
    328865 5cb8:B (1.88) BS01 ADX 2.7.1.25 GO:0000103 ... P72940 26294763 MOAD: Ki=18.2uM
    328866 5cb8:B (1.88) BS02 SO4 2.7.1.25 GO:0000103 ... P72940 26294763
    328867 5cbb:A (2.012) BS01 MG 2.3.3.9 GO:0000287 ... P9WK17 27738104
    328868 5cbb:A (2.012) BS02 4ZF 2.3.3.9 GO:0000287 ... P9WK17 27738104
    328869 5cbf:A (3.61) BS01 CA ? GO:0016020 ... D5UM26 27678077
    328870 5cbf:B (3.61) BS01 CA ? GO:0016020 ... D5UM26 27678077
    328871 5cbf:D (3.61) BS01 CA ? GO:0016020 ... D5UM26 27678077
    328872 5cbg:A (3.14) BS01 CA ? GO:0016020 ... D5UM26 27678077
    328873 5cbg:D (3.14) BS01 CA ? GO:0016020 ... D5UM26 27678077
    328874 5cbg:F (3.14) BS01 CA ? GO:0016020 ... D5UM26 27678077
    328875 5cbh:A (3.37) BS01 CA ? GO:0016020 ... D5UM26 27678077
    328876 5cbh:B (3.37) BS01 CA ? GO:0016020 ... D5UM26 27678077
    328877 5cbh:D (3.37) BS01 CA ? GO:0016020 ... D5UM26 27678077
    328878 5cbh:D (3.37) BS02 CA ? GO:0016020 ... D5UM26 27678077
    328879 5cbh:E (3.37) BS01 CA ? GO:0016020 ... D5UM26 27678077
    328880 5cbi:A (1.988) BS01 MG 2.3.3.9 GO:0000287 ... P9WK17 27738104
    328881 5cbi:A (1.988) BS02 4ZC 2.3.3.9 GO:0000287 ... P9WK17 27738104
    328882 5cbi:A (1.988) BS03 4ZC 2.3.3.9 GO:0000287 ... P9WK17 27738104
    328883 5cbi:A (1.988) BS04 4ZC 2.3.3.9 GO:0000287 ... P9WK17 27738104
    328884 5cbi:A (1.988) BS05 4ZC 2.3.3.9 GO:0000287 ... P9WK17 27738104
    328885 5cbj:A (1.957) BS01 MG 2.3.3.9 GO:0000287 ... P9WK17 27738104
    328886 5cbj:A (1.957) BS02 4ZD 2.3.3.9 GO:0000287 ... P9WK17 27738104
    328887 5cbk:A (2.462) BS01 MG ? GO:0046872 ... A0A0M5I297 26450211
    328888 5cbl:A (1.781) BS01 BGC ? GO:0030246 ... P56470 26432949
    328889 5cbl:A (1.781) BS02 GAL ? GO:0030246 ... P56470 26432949
    328890 5cbl:B (1.781) BS01 BGC ? GO:0030246 ... P56470 26432949
    328891 5cbl:B (1.781) BS02 GAL ? GO:0030246 ... P56470 26432949
    328892 5cbl:C (1.781) BS01 BGC ? GO:0030246 ... P56470 26432949
    328893 5cbl:C (1.781) BS02 GAL ? GO:0030246 ... P56470 26432949
    328894 5cbl:D (1.781) BS01 BGC ? GO:0030246 ... P56470 26432949
    328895 5cbl:D (1.781) BS02 GAL ? GO:0030246 ... P56470 26432949
    328896 5cbm:A (2.3) BS01 CO3 3.4.11.1 GO:0005737 ... A0A024V0B1 26406322
    328897 5cbm:A (2.3) BS02 ZN 3.4.11.1 GO:0005737 ... A0A024V0B1 26406322
    328898 5cbm:A (2.3) BS03 ZN 3.4.11.1 GO:0005737 ... A0A024V0B1 26406322
    328899 5cbm:A (2.3) BS04 4ZN 3.4.11.1 GO:0005737 ... A0A024V0B1 26406322
    328900 5cbm:B (2.3) BS01 CO3 3.4.11.1 GO:0005737 ... A0A024V0B1 26406322
    328901 5cbm:B (2.3) BS02 ZN 3.4.11.1 GO:0005737 ... A0A024V0B1 26406322
    328902 5cbm:B (2.3) BS03 ZN 3.4.11.1 GO:0005737 ... A0A024V0B1 26406322
    328903 5cbm:B (2.3) BS04 4ZN 3.4.11.1 GO:0005737 ... A0A024V0B1 26406322
    328904 5cbm:C (2.3) BS01 CO3 3.4.11.1 GO:0005737 ... A0A024V0B1 26406322
    328905 5cbm:C (2.3) BS02 ZN 3.4.11.1 GO:0005737 ... A0A024V0B1 26406322
    328906 5cbm:C (2.3) BS03 ZN 3.4.11.1 GO:0005737 ... A0A024V0B1 26406322
    328907 5cbm:C (2.3) BS04 4ZN 3.4.11.1 GO:0005737 ... A0A024V0B1 26406322
    328908 5cbm:D (2.3) BS01 CO3 3.4.11.1 GO:0005737 ... A0A024V0B1 26406322
    328909 5cbm:D (2.3) BS02 ZN 3.4.11.1 GO:0005737 ... A0A024V0B1 26406322
    328910 5cbm:D (2.3) BS03 ZN 3.4.11.1 GO:0005737 ... A0A024V0B1 26406322
    328911 5cbm:D (2.3) BS04 4ZN 3.4.11.1 GO:0005737 ... A0A024V0B1 26406322
    328912 5cbm:E (2.3) BS01 CO3 3.4.11.1 GO:0005737 ... A0A024V0B1 26406322
    328913 5cbm:E (2.3) BS02 ZN 3.4.11.1 GO:0005737 ... A0A024V0B1 26406322
    328914 5cbm:E (2.3) BS03 ZN 3.4.11.1 GO:0005737 ... A0A024V0B1 26406322
    328915 5cbm:E (2.3) BS04 4ZN 3.4.11.1 GO:0005737 ... A0A024V0B1 26406322
    328916 5cbm:F (2.3) BS01 CO3 3.4.11.1 GO:0005737 ... A0A024V0B1 26406322
    328917 5cbm:F (2.3) BS02 ZN 3.4.11.1 GO:0005737 ... A0A024V0B1 26406322
    328918 5cbm:F (2.3) BS03 ZN 3.4.11.1 GO:0005737 ... A0A024V0B1 26406322
    328919 5cbm:F (2.3) BS04 4ZN 3.4.11.1 GO:0005737 ... A0A024V0B1 26406322
    328920 5cbm:G (2.3) BS01 CO3 3.4.11.1 GO:0005737 ... A0A024V0B1 26406322
    328921 5cbm:G (2.3) BS02 ZN 3.4.11.1 GO:0005737 ... A0A024V0B1 26406322
    328922 5cbm:G (2.3) BS03 ZN 3.4.11.1 GO:0005737 ... A0A024V0B1 26406322
    328923 5cbm:G (2.3) BS04 4ZN 3.4.11.1 GO:0005737 ... A0A024V0B1 26406322
    328924 5cbm:H (2.3) BS01 CO3 3.4.11.1 GO:0005737 ... A0A024V0B1 26406322
    328925 5cbm:H (2.3) BS02 ZN 3.4.11.1 GO:0005737 ... A0A024V0B1 26406322
    328926 5cbm:H (2.3) BS03 ZN 3.4.11.1 GO:0005737 ... A0A024V0B1 26406322
    328927 5cbm:H (2.3) BS04 4ZN 3.4.11.1 GO:0005737 ... A0A024V0B1 26406322
    328928 5cbm:I (2.3) BS01 CO3 3.4.11.1 GO:0005737 ... A0A024V0B1 26406322
    328929 5cbm:I (2.3) BS02 ZN 3.4.11.1 GO:0005737 ... A0A024V0B1 26406322
    328930 5cbm:I (2.3) BS03 ZN 3.4.11.1 GO:0005737 ... A0A024V0B1 26406322
    328931 5cbm:I (2.3) BS04 4ZN 3.4.11.1 GO:0005737 ... A0A024V0B1 26406322
    328932 5cbm:J (2.3) BS01 CO3 3.4.11.1 GO:0005737 ... A0A024V0B1 26406322
    328933 5cbm:J (2.3) BS02 ZN 3.4.11.1 GO:0005737 ... A0A024V0B1 26406322
    328934 5cbm:J (2.3) BS03 ZN 3.4.11.1 GO:0005737 ... A0A024V0B1 26406322
    328935 5cbm:J (2.3) BS04 4ZN 3.4.11.1 GO:0005737 ... A0A024V0B1 26406322
    328936 5cbm:K (2.3) BS01 CO3 3.4.11.1 GO:0005737 ... A0A024V0B1 26406322
    328937 5cbm:K (2.3) BS02 ZN 3.4.11.1 GO:0005737 ... A0A024V0B1 26406322
    328938 5cbm:K (2.3) BS03 ZN 3.4.11.1 GO:0005737 ... A0A024V0B1 26406322
    328939 5cbm:K (2.3) BS04 4ZN 3.4.11.1 GO:0005737 ... A0A024V0B1 26406322
    328940 5cbm:L (2.3) BS01 CO3 3.4.11.1 GO:0005737 ... A0A024V0B1 26406322
    328941 5cbm:L (2.3) BS02 ZN 3.4.11.1 GO:0005737 ... A0A024V0B1 26406322
    328942 5cbm:L (2.3) BS03 ZN 3.4.11.1 GO:0005737 ... A0A024V0B1 26406322
    328943 5cbm:L (2.3) BS04 4ZN 3.4.11.1 GO:0005737 ... A0A024V0B1 26406322
    328944 5cbn:A (2.3) BS01 EYC ? GO:0019865 ... P38507 26980593
    328945 5cbr:A (1.996) BS01 4ZK ? GO:0015276 ... P19491 26653877 MOAD: Kd=1.8uM
    BindingDB: Ki=1740nM, IC50=3700nM
    328946 5cbs:A (1.801) BS01 E42 ? GO:0015276 ... P19491 26653877 MOAD: Kd=3.9uM
    BindingDB: Ki=24000nM, IC50=6300nM
    328947 5cbs:B (1.801) BS01 E42 ? GO:0015276 ... P19491 26653877 MOAD: Kd=3.9uM
    BindingDB: Ki=24000nM, IC50=6300nM
    328948 5cbs:C (1.801) BS01 E42 ? GO:0015276 ... P19491 26653877 MOAD: Kd=3.9uM
    BindingDB: Ki=24000nM, IC50=6300nM
    328949 5cbs:D (1.801) BS01 E42 ? GO:0015276 ... P19491 26653877 MOAD: Kd=3.9uM
    BindingDB: Ki=24000nM, IC50=6300nM
    328950 5cbt:A (1.45) BS01 4ZL 5.2.1.8 GO:0000413 ... P30405 N/A
    328951 5cbu:A (1.4) BS01 4ZM 5.2.1.8 GO:0000413 ... P30405 N/A
    328952 5cbu:A (1.4) BS02 4ZM 5.2.1.8 GO:0000413 ... P30405 N/A
    328953 5cbv:A (1.8) BS01 4ZP 5.2.1.8 GO:0000413 ... P30405 N/A
    328954 5cbw:A (1.8) BS01 4ZO 5.2.1.8 GO:0000413 ... P30405 N/A
    328955 5cbx:A (2.0) BS01 dna ? GO:0003700 ... P04150 26715749
    328956 5cbx:A (2.0) BS02 dna ? GO:0003700 ... P04150 26715749
    328957 5cbx:A (2.0) BS03 ZN ? GO:0003700 ... P04150 26715749
    328958 5cbx:A (2.0) BS04 ZN ? GO:0003700 ... P04150 26715749
    328959 5cbx:B (2.0) BS01 dna ? GO:0003700 ... P04150 26715749
    328960 5cbx:B (2.0) BS02 dna ? GO:0003700 ... P04150 26715749
    328961 5cbx:B (2.0) BS03 ZN ? GO:0003700 ... P04150 26715749
    328962 5cbx:B (2.0) BS04 ZN ? GO:0003700 ... P04150 26715749
    328963 5cbx:E (2.0) BS01 dna ? GO:0003700 ... P04150 26715749
    328964 5cbx:E (2.0) BS02 dna ? GO:0003700 ... P04150 26715749
    328965 5cbx:E (2.0) BS03 ZN ? GO:0003700 ... P04150 26715749
    328966 5cbx:E (2.0) BS04 ZN ? GO:0003700 ... P04150 26715749
    328967 5cbx:F (2.0) BS01 dna ? GO:0003700 ... P04150 26715749
    328968 5cbx:F (2.0) BS02 dna ? GO:0003700 ... P04150 26715749
    328969 5cbx:F (2.0) BS03 ZN ? GO:0003700 ... P04150 26715749
    328970 5cbx:F (2.0) BS04 ZN ? GO:0003700 ... P04150 26715749
    328971 5cby:A (1.997) BS01 dna ? GO:0003700 ... P04150 26715749
    328972 5cby:A (1.997) BS02 dna ? GO:0003700 ... P04150 26715749
    328973 5cby:A (1.997) BS03 ZN ? GO:0003700 ... P04150 26715749
    328974 5cby:A (1.997) BS04 ZN ? GO:0003700 ... P04150 26715749
    328975 5cby:B (1.997) BS01 dna ? GO:0003700 ... P04150 26715749
    328976 5cby:B (1.997) BS02 dna ? GO:0003700 ... P04150 26715749
    328977 5cby:B (1.997) BS03 ZN ? GO:0003700 ... P04150 26715749
    328978 5cby:B (1.997) BS04 ZN ? GO:0003700 ... P04150 26715749
    328979 5cbz:A (2.2) BS01 dna ? GO:0003700 ... P04150 26715749
    328980 5cbz:A (2.2) BS02 dna ? GO:0003700 ... P04150 26715749
    328981 5cbz:A (2.2) BS03 ZN ? GO:0003700 ... P04150 26715749
    328982 5cbz:A (2.2) BS04 ZN ? GO:0003700 ... P04150 26715749
    328983 5cbz:B (2.2) BS01 dna ? GO:0003700 ... P04150 26715749
    328984 5cbz:B (2.2) BS02 dna ? GO:0003700 ... P04150 26715749
    328985 5cbz:B (2.2) BS03 ZN ? GO:0003700 ... P04150 26715749
    328986 5cbz:B (2.2) BS04 ZN ? GO:0003700 ... P04150 26715749
    328987 5cbz:E (2.2) BS01 dna ? GO:0003700 ... P04150 26715749
    328988 5cbz:E (2.2) BS02 dna ? GO:0003700 ... P04150 26715749
    328989 5cbz:E (2.2) BS03 ZN ? GO:0003700 ... P04150 26715749
    328990 5cbz:E (2.2) BS04 ZN ? GO:0003700 ... P04150 26715749
    328991 5cbz:F (2.2) BS01 dna ? GO:0003700 ... P04150 26715749
    328992 5cbz:F (2.2) BS02 dna ? GO:0003700 ... P04150 26715749
    328993 5cbz:F (2.2) BS03 ZN ? GO:0003700 ... P04150 26715749
    328994 5cbz:F (2.2) BS04 ZN ? GO:0003700 ... P04150 26715749
    328995 5cc0:A (2.405) BS01 dna ? GO:0003700 ... P06401 26715749
    328996 5cc0:A (2.405) BS02 dna ? GO:0003700 ... P06401 26715749
    328997 5cc0:A (2.405) BS03 ZN ? GO:0003700 ... P06401 26715749
    328998 5cc0:A (2.405) BS04 ZN ? GO:0003700 ... P06401 26715749
    328999 5cc0:B (2.405) BS01 dna ? GO:0003700 ... P06401 26715749
    329000 5cc0:B (2.405) BS02 dna ? GO:0003700 ... P06401 26715749

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).