SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    338801 5e81:D8 (2.95) BS01 rna ? GO:0003723 ... P60492 26791911
    338802 5e81:E5 (2.95) BS01 rna ? GO:0003735 ... P60493 26791911
    338803 5e81:E5 (2.95) BS02 rna ? GO:0003735 ... P60493 26791911
    338804 5e81:E5 (2.95) BS03 MG ? GO:0003735 ... P60493 26791911
    338805 5e81:E8 (2.95) BS01 rna ? GO:0003735 ... Q5SHP3 26791911
    338806 5e81:F5 (2.95) BS01 rna ? GO:0003735 ... P60494 26791911
    338807 5e81:F8 (2.95) BS01 rna ? GO:0003735 ... Q5SHP0 26791911
    338808 5e81:G5 (2.95) BS01 rna ? GO:0003735 ... Q5SHP6 26791911
    338809 5e81:G8 (2.95) BS01 rna ? GO:0003723 ... Q5SHP9 26791911
    338810 5e81:H5 (2.95) BS01 rna ? GO:0003735 ... Q5SHQ6 26791911
    338811 5e81:H5 (2.95) BS02 rna ? GO:0003735 ... Q5SHQ6 26791911
    338812 5e81:H8 (2.95) BS01 rna ? GO:0003723 ... Q5SHZ1 26791911
    338813 5e81:I8 (2.95) BS01 rna ? GO:0003735 ... P60493 26791911
    338814 5e81:I8 (2.95) BS02 rna ? GO:0003735 ... P60493 26791911
    338815 5e81:J5 (2.95) BS01 rna ? GO:0003735 ... P80339 26791911
    338816 5e81:J8 (2.95) BS01 rna ? GO:0003735 ... P60494 26791911
    338817 5e81:K8 (2.95) BS01 rna ? GO:0003735 ... Q5SHP6 26791911
    338818 5e81:L5 (2.95) BS01 rna ? GO:0003735 ... P80340 26791911
    338819 5e81:L8 (2.95) BS01 rna ? GO:0003735 ... Q5SHQ6 26791911
    338820 5e81:L8 (2.95) BS02 rna ? GO:0003735 ... Q5SHQ6 26791911
    338821 5e81:M5 (2.95) BS01 rna ? GO:0003735 ... Q5SKU1 26791911
    338822 5e81:M5 (2.95) BS02 MG ? GO:0003735 ... Q5SKU1 26791911
    338823 5e81:M8 (2.95) BS01 rna ? GO:0003735 ... Q5SJE1 26791911
    338824 5e81:N8 (2.95) BS01 rna ? GO:0003735 ... P80339 26791911
    338825 5e81:P8 (2.95) BS01 rna ? GO:0003735 ... P80340 26791911
    338826 5e81:Q8 (2.95) BS01 rna ? GO:0003735 ... Q5SKU1 26791911
    338827 5e83:A (1.8) BS01 HEM ? GO:0004601 ... P69905 27378309
    338828 5e83:A (1.8) BS02 5L7 ? GO:0004601 ... P69905 27378309
    338829 5e83:B (1.8) BS01 HEM ? GO:0004601 ... P68871 27378309
    338830 5e83:C (1.8) BS01 5L7 ? GO:0004601 ... P69905 27378309
    338831 5e83:C (1.8) BS02 HEM ? GO:0004601 ... P69905 27378309
    338832 5e83:D (1.8) BS01 HEM ? GO:0004601 ... P68871 27378309
    338833 5e84:A (2.99) BS01 ATP 3.6.4.10 GO:0005509 ... P11021 26655470
    338834 5e84:A (2.99) BS02 MG 3.6.4.10 GO:0005509 ... P11021 26655470
    338835 5e84:A (2.99) BS03 MG 3.6.4.10 GO:0005509 ... P11021 26655470
    338836 5e84:A (2.99) BS04 ZN 3.6.4.10 GO:0005509 ... P11021 26655470
    338837 5e84:B (2.99) BS01 ATP 3.6.4.10 GO:0005509 ... P11021 26655470
    338838 5e84:B (2.99) BS02 ZN 3.6.4.10 GO:0005509 ... P11021 26655470
    338839 5e84:B (2.99) BS03 MG 3.6.4.10 GO:0005509 ... P11021 26655470
    338840 5e84:B (2.99) BS04 MG 3.6.4.10 GO:0005509 ... P11021 26655470
    338841 5e84:C (2.99) BS01 ATP 3.6.4.10 GO:0005509 ... P11021 26655470
    338842 5e84:C (2.99) BS02 MG 3.6.4.10 GO:0005509 ... P11021 26655470
    338843 5e84:C (2.99) BS03 ZN 3.6.4.10 GO:0005509 ... P11021 26655470
    338844 5e84:D (2.99) BS01 ATP 3.6.4.10 GO:0005509 ... P11021 26655470
    338845 5e84:D (2.99) BS02 MG 3.6.4.10 GO:0005509 ... P11021 26655470
    338846 5e84:D (2.99) BS03 MG 3.6.4.10 GO:0005509 ... P11021 26655470
    338847 5e84:D (2.99) BS04 ZN 3.6.4.10 GO:0005509 ... P11021 26655470
    338848 5e84:E (2.99) BS01 ATP 3.6.4.10 GO:0005509 ... P11021 26655470
    338849 5e84:E (2.99) BS02 MG 3.6.4.10 GO:0005509 ... P11021 26655470
    338850 5e84:E (2.99) BS03 ZN 3.6.4.10 GO:0005509 ... P11021 26655470
    338851 5e84:F (2.99) BS01 ATP 3.6.4.10 GO:0005509 ... P11021 26655470
    338852 5e84:F (2.99) BS02 MG 3.6.4.10 GO:0005509 ... P11021 26655470
    338853 5e84:F (2.99) BS03 ZN 3.6.4.10 GO:0005509 ... P11021 26655470
    338854 5e88:A (1.6) BS01 5KT ? GO:0030246 ... P17931 27356186 MOAD: Kd=0.065uM
    338855 5e89:A (1.5) BS01 TD2 ? GO:0030246 ... P17931 27356186 MOAD: Kd=0.014uM
    338856 5e8a:A (1.5) BS01 5KS ? GO:0030246 ... P17931 27356186 MOAD: Kd=0.034uM
    338857 5e8c:A (2.9) BS01 ZN ? GO:0008270 ... G3G955 26711332
    338858 5e8e:H (1.9) BS01 0G6 3.4.21.5 N/A P00734 26469093
    338859 5e8f:A (2.1) BS01 peptide 3.1.4.35 GO:0005095 ... O43924 26553937
    338860 5e8f:A (2.1) BS02 GER 3.1.4.35 GO:0005095 ... O43924 26553937
    338861 5e8f:C (2.1) BS01 peptide 3.1.4.35 GO:0005095 ... O43924 26553937
    338862 5e8f:C (2.1) BS02 GER 3.1.4.35 GO:0005095 ... O43924 26553937
    338863 5e8g:A (2.7) BS01 CO ? GO:0003700 ... Q01543 26618620
    338864 5e8g:B (2.7) BS01 CO ? GO:0003700 ... Q01543 26618620
    338865 5e8g:C (2.7) BS01 CO ? GO:0003700 ... Q01543 26618620
    338866 5e8g:D (2.7) BS01 CO ? GO:0003700 ... Q01543 26618620
    338867 5e8i:A (3.45) BS01 dna ? GO:0003700 ... Q01543 26618620
    338868 5e8i:A (3.45) BS02 dna ? GO:0003700 ... Q01543 26618620
    338869 5e8i:D (3.45) BS01 dna ? GO:0003700 ... Q01543 26618620
    338870 5e8i:D (3.45) BS02 dna ? GO:0003700 ... Q01543 26618620
    338871 5e8i:D (3.45) BS03 dna ? GO:0003700 ... Q01543 26618620
    338872 5e8i:G (3.45) BS01 dna ? GO:0003700 ... Q01543 26618620
    338873 5e8i:G (3.45) BS02 dna ? GO:0003700 ... Q01543 26618620
    338874 5e8i:J (3.45) BS01 dna ? GO:0003700 ... Q01543 26618620
    338875 5e8i:J (3.45) BS02 dna ? GO:0003700 ... Q01543 26618620
    338876 5e8j:A (2.35) BS01 SAH 2.1.1.56 GO:0004482 ... O43148 27422871
    338877 5e8j:B (2.35) BS01 SAH 2.1.1.56 GO:0004482 ... O43148 27422871
    338878 5e8m:A (1.75) BS01 FUC 3.2.1.166 GO:0016020 ... Q9Y251 26575439
    338879 5e8n:A (2.25) BS01 peptide ? N/A P01899 26800871
    338880 5e8n:D (2.25) BS01 peptide ? N/A P01899 26800871
    338881 5e8n:G (2.25) BS01 peptide ? N/A P01899 26800871
    338882 5e8n:J (2.25) BS01 peptide ? N/A P01899 26800871
    338883 5e8o:A (1.98) BS01 peptide ? N/A P01899 26800871
    338884 5e8o:D (1.98) BS01 peptide ? N/A P01899 26800871
    338885 5e8p:A (2.0) BS01 peptide ? N/A P01899 26800871
    338886 5e8p:D (2.0) BS01 peptide ? N/A P01899 26800871
    338887 5e8r:A (2.55) BS01 SAH 2.1.1.319 GO:0000122 ... Q96LA8 26598975
    338888 5e8r:A (2.55) BS02 5L6 2.1.1.319 GO:0000122 ... Q96LA8 26598975 BindingDB: IC50=4.0nM, Ki=0.8nM, Kd=6nM
    338889 5e8r:B (2.55) BS01 SAH 2.1.1.319 GO:0000122 ... Q96LA8 26598975
    338890 5e8r:B (2.55) BS02 5L6 2.1.1.319 GO:0000122 ... Q96LA8 26598975 BindingDB: IC50=4.0nM, Ki=0.8nM, Kd=6nM
    338891 5e8w:A (1.86) BS01 STU 2.7.11.30 GO:0004672 ... P36897 27139629
    338892 5e8x:A (1.45) BS01 STU 2.7.11.30 GO:0004672 ... P36897 27139629
    338893 5e8y:A (2.05) BS01 STU 2.7.11.30 GO:0004672 ... P37173 27139629
    338894 5e8z:A (1.51) BS01 5L4 2.7.11.30 GO:0004672 ... P36897 27139629
    338895 5e90:A (2.05) BS01 5L4 2.7.11.30 GO:0004672 ... P36897 27139629
    338896 5e91:A (2.42) BS01 5L4 2.7.11.30 GO:0004672 ... P37173 27139629
    338897 5e92:A (2.08) BS01 ANP 2.7.11.30 GO:0004672 ... P37173 27139629
    338898 5e92:A (2.08) BS02 MG 2.7.11.30 GO:0004672 ... P37173 27139629
    338899 5e93:A (1.41) BS01 5LL 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    338900 5e93:A (1.41) BS02 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    338901 5e93:B (1.41) BS01 5LL 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    338902 5e93:B (1.41) BS02 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    338903 5e95:A (1.402) BS01 GDP 3.6.5.2 GO:0003924 ... P01112 27820802 MOAD: Kd=15.7nM
    338904 5e97:A (1.63) BS01 BDP 3.2.1.166 GO:0016020 ... Q9Y251 26575439
    338905 5e97:A (1.63) BS02 NPO 3.2.1.166 GO:0016020 ... Q9Y251 26575439
    338906 5e97:B (1.63) BS01 BDP 3.2.1.166 N/A Q9Y251 26575439
    338907 5e98:A (1.63) BS01 BDP 3.2.1.166 GO:0016020 ... Q9Y251 26575439
    338908 5e98:A (1.63) BS02 GNS 3.2.1.166 GO:0016020 ... Q9Y251 26575439
    338909 5e98:A (1.63) BS03 BDP 3.2.1.166 GO:0016020 ... Q9Y251 26575439
    338910 5e98:A (1.63) BS04 NPO 3.2.1.166 GO:0016020 ... Q9Y251 26575439
    338911 5e98:B (1.63) BS01 BDP 3.2.1.166 N/A Q9Y251 26575439
    338912 5e98:B (1.63) BS02 GNS 3.2.1.166 N/A Q9Y251 26575439
    338913 5e9a:A (2.561) BS01 ZN 3.2.1.23 GO:0004565 ... A0A0B4U8I5 26145832
    338914 5e9a:B (2.561) BS01 ZN 3.2.1.23 GO:0004565 ... A0A0B4U8I5 26145832
    338915 5e9a:C (2.561) BS01 ZN 3.2.1.23 GO:0004565 ... A0A0B4U8I5 26145832
    338916 5e9a:D (2.561) BS01 ZN 3.2.1.23 GO:0004565 ... A0A0B4U8I5 26145832
    338917 5e9a:E (2.561) BS01 ZN 3.2.1.23 GO:0004565 ... A0A0B4U8I5 26145832
    338918 5e9a:F (2.561) BS01 ZN 3.2.1.23 GO:0004565 ... A0A0B4U8I5 26145832
    338919 5e9b:A (1.88) BS01 BDP 3.2.1.166 GO:0016020 ... Q9Y251 26575439
    338920 5e9b:A (1.88) BS02 SGN 3.2.1.166 GO:0016020 ... Q9Y251 26575439
    338921 5e9b:A (1.88) BS03 BDP 3.2.1.166 GO:0016020 ... Q9Y251 26575439
    338922 5e9b:B (1.88) BS01 BDP 3.2.1.166 N/A Q9Y251 26575439
    338923 5e9b:B (1.88) BS02 SGN 3.2.1.166 N/A Q9Y251 26575439
    338924 5e9c:A (1.73) BS01 5KV 3.2.1.166 GO:0016020 ... Q9Y251 26575439
    338925 5e9c:A (1.73) BS02 IDR 3.2.1.166 GO:0016020 ... Q9Y251 26575439
    338926 5e9c:A (1.73) BS03 SGN 3.2.1.166 GO:0016020 ... Q9Y251 26575439
    338927 5e9c:A (1.73) BS04 SO4 3.2.1.166 GO:0016020 ... Q9Y251 26575439
    338928 5e9c:B (1.73) BS01 IDR 3.2.1.166 N/A Q9Y251 26575439
    338929 5e9d:A (2.51) BS01 peptide ? N/A P04439 27238970
    338930 5e9d:D (2.51) BS01 peptide ? GO:0002250 ... A0A075B6T6 27238970
    338931 5e9d:F (2.51) BS01 peptide ? N/A P04439 27238970
    338932 5e9d:I (2.51) BS01 peptide ? GO:0002250 ... A0A075B6T6 27238970
    338933 5e9e:A (2.4) BS01 ANP 2.7.11.7 GO:0004674 ... P42527 27211275
    338934 5e9e:A (2.4) BS02 ZN 2.7.11.7 GO:0004674 ... P42527 27211275
    338935 5e9e:B (2.4) BS01 ANP 2.7.11.7 GO:0004674 ... P42527 27211275
    338936 5e9e:B (2.4) BS02 ZN 2.7.11.7 GO:0004674 ... P42527 27211275
    338937 5e9f:A (2.8) BS01 MG 4.1.3.1
    4.1.3.30
    GO:0003824 ... P0CT06 27016285
    338938 5e9f:B (2.8) BS01 MG 4.1.3.1
    4.1.3.30
    GO:0003824 ... P0CT06 27016285
    338939 5e9f:C (2.8) BS01 MG 4.1.3.1
    4.1.3.30
    GO:0003824 ... P0CT06 27016285
    338940 5e9f:D (2.8) BS01 MG 4.1.3.1
    4.1.3.30
    GO:0003824 ... P0CT06 27016285
    338941 5e9g:A (2.1) BS01 GLV 4.1.3.1
    4.1.3.30
    GO:0003824 ... P0CT06 27016285
    338942 5e9g:A (2.1) BS02 GOL 4.1.3.1
    4.1.3.30
    GO:0003824 ... P0CT06 27016285
    338943 5e9g:B (2.1) BS01 GLV 4.1.3.1
    4.1.3.30
    GO:0003824 ... P0CT06 27016285
    338944 5e9g:B (2.1) BS02 GOL 4.1.3.1
    4.1.3.30
    GO:0003824 ... P0CT06 27016285
    338945 5e9g:C (2.1) BS01 GLV 4.1.3.1
    4.1.3.30
    GO:0003824 ... P0CT06 27016285
    338946 5e9g:D (2.1) BS01 GLV 4.1.3.1
    4.1.3.30
    GO:0003824 ... P0CT06 27016285
    338947 5e9g:D (2.1) BS02 GOL 4.1.3.1
    4.1.3.30
    GO:0003824 ... P0CT06 27016285
    338948 5e9h:A (2.3) BS01 MLI 4.1.3.1
    4.1.3.30
    GO:0003824 ... Q4HYR2 27016285
    338949 5e9i:A (1.96) BS01 F60 ? N/A Q9UIF8 26942307
    338950 5e9j:A (3.47) BS01 SAH 2.1.1.56 GO:0004482 ... O43148 27422871
    338951 5e9j:B (3.47) BS01 SAH 2.1.1.56 GO:0004482 ... O43148 27422871
    338952 5e9k:A (2.067) BS01 5KX ? N/A Q9UIF8 26942307
    338953 5e9m:A (1.778) BS01 BAE ? N/A Q9UIF8 26942307
    338954 5e9n:A (0.95) BS01 CU 1.10.3.2 GO:0005507 ... I1VE66 29890251
    338955 5e9n:A (0.95) BS02 CU 1.10.3.2 GO:0005507 ... I1VE66 29890251
    338956 5e9n:A (0.95) BS03 CU 1.10.3.2 GO:0005507 ... I1VE66 29890251
    338957 5e9n:A (0.95) BS04 CU 1.10.3.2 GO:0005507 ... I1VE66 29890251
    338958 5e9o:B (2.1) BS01 I3C 3.2.1.4 N/A E0RQU0 26868291
    338959 5e9o:C (2.1) BS01 I3C 3.2.1.4 N/A E0RQU0 26868291
    338960 5e9o:C (2.1) BS02 I3C 3.2.1.4 N/A E0RQU0 26868291
    338961 5e9o:D (2.1) BS01 I3C 3.2.1.4 N/A E0RQU0 26868291
    338962 5e9o:D (2.1) BS02 I3C 3.2.1.4 N/A E0RQU0 26868291
    338963 5e9q:A (1.79) BS01 SAM 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004482 ... P27915 27750202
    338964 5e9q:A (1.79) BS02 5KY 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004482 ... P27915 27750202
    338965 5e9q:C (1.79) BS01 SAM 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004482 ... P27915 27750202
    338966 5e9r:A (2.25) BS01 5LN 3.2.1.17 GO:0003796 ... P00698 N/A
    338967 5e9s:A (2.8) BS01 ASP ? GO:0005886 ... Q5JID0 27830699
    338968 5e9s:A (2.8) BS02 NA ? GO:0005886 ... Q5JID0 27830699
    338969 5e9s:A (2.8) BS03 NA ? GO:0005886 ... Q5JID0 27830699
    338970 5e9s:A (2.8) BS04 NA ? GO:0005886 ... Q5JID0 27830699
    338971 5e9s:A (2.8) BS05 DMU ? GO:0005886 ... Q5JID0 27830699
    338972 5e9s:B (2.8) BS01 ASP ? GO:0005886 ... Q5JID0 27830699
    338973 5e9s:B (2.8) BS02 NA ? GO:0005886 ... Q5JID0 27830699
    338974 5e9s:B (2.8) BS03 NA ? GO:0005886 ... Q5JID0 27830699
    338975 5e9s:B (2.8) BS04 NA ? GO:0005886 ... Q5JID0 27830699
    338976 5e9s:B (2.8) BS05 DMU ? GO:0005886 ... Q5JID0 27830699
    338977 5e9s:C (2.8) BS01 ASP ? GO:0005886 ... Q5JID0 27830699
    338978 5e9s:C (2.8) BS02 NA ? GO:0005886 ... Q5JID0 27830699
    338979 5e9s:C (2.8) BS03 NA ? GO:0005886 ... Q5JID0 27830699
    338980 5e9s:C (2.8) BS04 NA ? GO:0005886 ... Q5JID0 27830699
    338981 5e9s:C (2.8) BS05 DMU ? GO:0005886 ... Q5JID0 27830699
    338982 5e9u:A (3.84) BS01 UDP 2.4.1.- GO:0000166 ... Q9AET5 26884191
    338983 5e9u:E (3.84) BS01 UDP 2.4.1.- GO:0000166 ... Q9AET5 26884191
    338984 5e9v:A (1.8) BS01 5L0 ? N/A Q9H8M2 N/A
    338985 5e9v:B (1.8) BS01 5L0 ? N/A Q9H8M2 N/A
    338986 5e9w:A (2.283) BS01 SAH 2.1.1.56 GO:0004482 ... O43148 27422871
    338987 5e9w:B (2.283) BS01 SAH 2.1.1.56 GO:0004482 ... O43148 27422871
    338988 5e9w:C (2.283) BS01 SAH 2.1.1.56 GO:0004482 ... O43148 27422871
    338989 5e9w:D (2.283) BS01 SAH 2.1.1.56 GO:0004482 ... O43148 27422871
    338990 5e9x:A (1.943) BS01 MG 2.3.3.9 GO:0000287 ... P9WK17 27738104
    338991 5e9x:A (1.943) BS02 5LA 2.3.3.9 GO:0000287 ... P9WK17 27738104
    338992 5e9z:A (2.23) BS01 PP9 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 26757175
    338993 5e9z:B (2.23) BS01 PP9 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 26757175
    338994 5e9z:C (2.23) BS01 PP9 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 26757175
    338995 5e9z:D (2.23) BS01 PP9 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 26757175
    338996 5ea0:H (2.0) BS01 peptide N/A N/A N/A 27160908
    338997 5ea0:L (2.0) BS01 peptide N/A N/A N/A 27160908
    338998 5ea2:A (2.01) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 26822308
    338999 5ea2:A (2.01) BS02 FAD 1.6.5.2 GO:0000209 ... P15559 26822308
    339000 5ea2:C (2.01) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 26822308

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).