SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    352001 5h68:A (1.975) BS02 MG N/A N/A N/A 28286005
    352002 5h68:A (1.975) BS03 AGS N/A N/A N/A 28286005
    352003 5h68:B (1.975) BS01 AGS N/A N/A N/A 28286005
    352004 5h68:B (1.975) BS02 AGS N/A N/A N/A 28286005
    352005 5h68:B (1.975) BS03 MG N/A N/A N/A 28286005
    352006 5h6b:A (2.3) BS01 ZN 3.1.1.3 GO:0016042 ... H0B8D4 28857479
    352007 5h6b:A (2.3) BS02 ZN 3.1.1.3 GO:0016042 ... H0B8D4 28857479
    352008 5h6h:A (1.446) BS01 MN 5.1.3.-
    5.3.1.-
    GO:0006020 ... Q9WYP7 28258150
    352009 5h6h:B (1.446) BS01 MN 5.1.3.-
    5.3.1.-
    GO:0006020 ... Q9WYP7 28258150
    352010 5h6j:A (1.9) BS01 NAD 2.4.2.- N/A Q9U8Q4 28765284
    352011 5h6j:B (1.9) BS01 NAD 2.4.2.- N/A Q9U8Q4 28765284
    352012 5h6l:A (2.1) BS01 NAD 2.4.2.- N/A Q9U8Q4 28765284
    352013 5h6l:B (2.1) BS01 NAD 2.4.2.- N/A Q9U8Q4 28765284
    352014 5h6o:A (2.702) BS01 DPM 2.5.1.61 GO:0004418 ... Q9KVM1 N/A
    352015 5h6o:A (2.702) BS02 MG 2.5.1.61 GO:0004418 ... Q9KVM1 N/A
    352016 5h6q:A (2.53) BS01 peptide 1.14.99.66 GO:0005634 ... O60341 28336409
    352017 5h6q:A (2.53) BS02 FAD 1.14.99.66 GO:0005634 ... O60341 28336409
    352018 5h6r:A (2.6) BS01 peptide 1.14.99.66 GO:0005634 ... O60341 28336409
    352019 5h6r:A (2.6) BS02 FAD 1.14.99.66 GO:0005634 ... O60341 28336409
    352020 5h6s:A (1.8) BS01 HDH N/A N/A N/A 27908731
    352021 5h6s:B (1.8) BS01 HDH N/A N/A N/A 27908731
    352022 5h6s:C (1.8) BS01 HDH N/A N/A N/A 27908731
    352023 5h6s:D (1.8) BS01 HDH N/A N/A N/A 27908731
    352024 5h6u:A (2.006) BS01 BEM ? GO:0042597 ... Q9KWT5 28768763
    352025 5h6u:A (2.006) BS02 BEM ? GO:0042597 ... Q9KWT5 28768763
    352026 5h6u:A (2.006) BS03 BEM ? GO:0042597 ... Q9KWT5 28768763
    352027 5h6u:A (2.006) BS04 BEM ? GO:0042597 ... Q9KWT5 28768763
    352028 5h6u:A (2.006) BS05 BEM ? GO:0042597 ... Q9KWT5 28768763
    352029 5h6u:A (2.006) BS06 CA ? GO:0042597 ... Q9KWT5 28768763
    352030 5h6u:A (2.006) BS07 CA ? GO:0042597 ... Q9KWT5 28768763
    352031 5h6u:B (2.006) BS01 BEM ? GO:0042597 ... Q9KWT5 28768763
    352032 5h6u:B (2.006) BS02 BEM ? GO:0042597 ... Q9KWT5 28768763
    352033 5h6u:B (2.006) BS03 BEM ? GO:0042597 ... Q9KWT5 28768763
    352034 5h6u:B (2.006) BS04 BEM ? GO:0042597 ... Q9KWT5 28768763
    352035 5h6u:B (2.006) BS05 BEM ? GO:0042597 ... Q9KWT5 28768763
    352036 5h6u:B (2.006) BS06 CA ? GO:0042597 ... Q9KWT5 28768763
    352037 5h6v:A (2.422) BS01 7HS 3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004252 ... H8XX12 28689970
    352038 5h6v:B (2.422) BS01 7HS 3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0003723 ... H8XX12 28689970
    352039 5h6y:A (2.0) BS01 peptide ? GO:0006357 ... Q12830 N/A
    352040 5h70:A (2.4) BS01 ADP 2.7.4.9 GO:0004798 ... Q970Q8 N/A
    352041 5h70:B (2.4) BS01 ADP 2.7.4.9 GO:0004798 ... Q970Q8 N/A
    352042 5h70:B (2.4) BS02 MG 2.7.4.9 GO:0004798 ... Q970Q8 N/A
    352043 5h71:A (1.549) BS01 BEM ? GO:0042597 ... Q9KWT5 28768763
    352044 5h71:A (1.549) BS02 BEM ? GO:0042597 ... Q9KWT5 28768763
    352045 5h71:A (1.549) BS03 MAW ? GO:0042597 ... Q9KWT5 28768763
    352046 5h71:A (1.549) BS04 CA ? GO:0042597 ... Q9KWT5 28768763
    352047 5h71:B (1.549) BS01 BEM ? GO:0042597 ... Q9KWT5 28768763
    352048 5h71:B (1.549) BS02 BEM ? GO:0042597 ... Q9KWT5 28768763
    352049 5h71:B (1.549) BS03 MAW ? GO:0042597 ... Q9KWT5 28768763
    352050 5h71:B (1.549) BS04 CA ? GO:0042597 ... Q9KWT5 28768763
    352051 5h73:A (1.58) BS01 7L7 1.3.5.2 GO:0004151 ... Q02127 N/A
    352052 5h73:A (1.58) BS02 FMN 1.3.5.2 GO:0004151 ... Q02127 N/A
    352053 5h74:A (2.6) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    352054 5h74:A (2.6) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    352055 5h74:B (2.6) BS01 GDP ? GO:0000226 ... Q6B856 N/A
    352056 5h74:B (2.6) BS02 7LG ? GO:0000226 ... Q6B856 N/A
    352057 5h74:C (2.6) BS01 7LG 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    352058 5h74:C (2.6) BS02 GTP 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    352059 5h74:C (2.6) BS03 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    352060 5h74:D (2.6) BS01 GTP ? GO:0000226 ... Q6B856 N/A
    352061 5h74:D (2.6) BS02 MG ? GO:0000226 ... Q6B856 N/A
    352062 5h74:D (2.6) BS03 7LG ? GO:0000226 ... Q6B856 N/A
    352063 5h74:F (2.6) BS01 ACP N/A GO:0036211 ... N/A N/A
    352064 5h75:A (2.738) BS01 FAD 4.1.1.- GO:0003824 ... P38507
    Q9RC23
    28572639
    352065 5h75:A (2.738) BS02 FAD 4.1.1.- GO:0003824 ... P38507
    Q9RC23
    28572639
    352066 5h75:B (2.738) BS01 FAD 4.1.1.- GO:0003824 ... P38507
    Q9RC23
    28572639
    352067 5h75:B (2.738) BS02 FAD 4.1.1.- GO:0003824 ... P38507
    Q9RC23
    28572639
    352068 5h75:C (2.738) BS01 FAD 4.1.1.- GO:0003824 ... P38507
    Q9RC23
    28572639
    352069 5h75:D (2.738) BS01 FAD 4.1.1.- GO:0003824 ... P38507
    Q9RC23
    28572639
    352070 5h7d:E (2.57) BS01 CA ? GO:0005509 ... O16305 28572639
    352071 5h7d:E (2.57) BS02 CA ? GO:0005509 ... O16305 28572639
    352072 5h7d:F (2.57) BS01 CA ? GO:0005509 ... O16305 28572639
    352073 5h7d:F (2.57) BS02 CA ? GO:0005509 ... O16305 28572639
    352074 5h7d:G (2.57) BS01 CA ? GO:0005509 ... O16305 28572639
    352075 5h7d:G (2.57) BS02 CA ? GO:0005509 ... O16305 28572639
    352076 5h7d:H (2.57) BS01 CA ? GO:0005509 ... O16305 28572639
    352077 5h7d:H (2.57) BS02 CA ? GO:0005509 ... O16305 28572639
    352078 5h7d:K (2.57) BS01 CA ? GO:0005509 ... O16305 28572639
    352079 5h7d:K (2.57) BS02 CA ? GO:0005509 ... O16305 28572639
    352080 5h7d:L (2.57) BS01 CA ? GO:0005509 ... O16305 28572639
    352081 5h7d:L (2.57) BS02 CA ? GO:0005509 ... O16305 28572639
    352082 5h7d:O (2.57) BS01 CA ? GO:0005509 ... O16305 28572639
    352083 5h7d:O (2.57) BS02 CA ? GO:0005509 ... O16305 28572639
    352084 5h7d:P (2.57) BS01 CA ? GO:0005509 ... O16305 28572639
    352085 5h7d:P (2.57) BS02 CA ? GO:0005509 ... O16305 28572639
    352086 5h7e:A (1.6) BS01 SO4 3.1.4.58 GO:0004113 ... O32509 28471359
    352087 5h7e:A (1.6) BS02 SO4 3.1.4.58 GO:0004113 ... O32509 28471359
    352088 5h7e:A (1.6) BS03 SO4 3.1.4.58 GO:0004113 ... O32509 28471359
    352089 5h7e:A (1.6) BS04 SO4 3.1.4.58 GO:0004113 ... O32509 28471359
    352090 5h7g:A (1.85) BS01 peptide ? N/A P41182 27856253
    352091 5h7g:A (1.85) BS02 peptide ? N/A P41182 27856253
    352092 5h7g:B (1.85) BS01 peptide ? N/A P41182 27856253
    352093 5h7g:B (1.85) BS02 peptide ? N/A P41182 27856253
    352094 5h7h:A (1.95) BS01 peptide ? N/A P41182 27856253
    352095 5h7h:A (1.95) BS02 peptide ? N/A P41182 27856253
    352096 5h7k:A (1.599) BS01 GDP ? GO:0003924 ... O59521 29471537
    352097 5h7l:A (3.1) BS01 peptide ? GO:0003746 ... O59521 29471537
    352098 5h7l:B (3.1) BS01 peptide ? GO:0003746 ... O59521 29471537
    352099 5h7n:A (1.849) BS01 GLC ? GO:0005515 ... P0AEX9
    P59046
    28112203
    352100 5h7n:A (1.849) BS02 GLC ? GO:0005515 ... P0AEX9
    P59046
    28112203
    352101 5h7n:A (1.849) BS03 GLC ? GO:0005515 ... P0AEX9
    P59046
    28112203
    352102 5h7n:A (1.849) BS04 GLC ? GO:0005515 ... P0AEX9
    P59046
    28112203
    352103 5h7n:B (1.849) BS01 GLC ? GO:0005515 ... P0AEX9
    P59046
    28112203
    352104 5h7n:B (1.849) BS02 GLC ? GO:0005515 ... P0AEX9
    P59046
    28112203
    352105 5h7n:B (1.849) BS03 GLC ? GO:0005515 ... P0AEX9
    P59046
    28112203
    352106 5h7n:B (1.849) BS04 GLC ? GO:0005515 ... P0AEX9
    P59046
    28112203
    352107 5h7o:A (2.8) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 29180476
    352108 5h7o:A (2.8) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 29180476
    352109 5h7o:A (2.8) BS03 7Q7 3.6.5.- GO:0000226 ... Q2XVP4 29180476
    352110 5h7o:B (2.8) BS01 GDP ? GO:0000226 ... Q6B856 29180476
    352111 5h7o:B (2.8) BS02 7Q7 ? GO:0000226 ... Q6B856 29180476
    352112 5h7o:C (2.8) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 29180476
    352113 5h7o:C (2.8) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 29180476
    352114 5h7o:C (2.8) BS03 7Q7 3.6.5.- GO:0000226 ... Q2XVP4 29180476
    352115 5h7o:D (2.8) BS01 GTP ? GO:0000226 ... Q6B856 29180476
    352116 5h7o:D (2.8) BS02 7Q7 ? GO:0000226 ... Q6B856 29180476
    352117 5h7o:F (2.8) BS01 ACP N/A GO:0036211 ... N/A 29180476
    352118 5h7p:A (-1.00) BS01 peptide ? GO:0032511 ... Q06263 27924850
    352119 5h7q:A (1.451) BS01 GLC ? GO:0005515 ... P0AEX9
    P41218
    28112203
    352120 5h7q:A (1.451) BS02 GLC ? GO:0005515 ... P0AEX9
    P41218
    28112203
    352121 5h7r:D (1.7) BS01 ZN 2.3.2.27 GO:0046872 ... Q8TBB1 29496391
    352122 5h7r:D (1.7) BS02 ZN 2.3.2.27 GO:0046872 ... Q8TBB1 29496391
    352123 5h7r:D (1.7) BS03 ZN 2.3.2.27 GO:0046872 ... Q8TBB1 29496391
    352124 5h7r:D (1.7) BS04 ZN 2.3.2.27 GO:0046872 ... Q8TBB1 29496391
    352125 5h7s:B (3.49) BS01 ZN 2.3.2.27 GO:0046872 ... Q8TBB1 29496391
    352126 5h7s:B (3.49) BS02 ZN 2.3.2.27 GO:0046872 ... Q8TBB1 29496391
    352127 5h7s:B (3.49) BS03 ZN 2.3.2.27 GO:0046872 ... Q8TBB1 29496391
    352128 5h7s:B (3.49) BS04 ZN 2.3.2.27 GO:0046872 ... Q8TBB1 29496391
    352129 5h7s:D (3.49) BS01 ZN 2.3.2.27 GO:0046872 ... Q8TBB1 29496391
    352130 5h7s:D (3.49) BS02 ZN 2.3.2.27 GO:0046872 ... Q8TBB1 29496391
    352131 5h7s:D (3.49) BS03 ZN 2.3.2.27 GO:0046872 ... Q8TBB1 29496391
    352132 5h7s:D (3.49) BS04 ZN 2.3.2.27 GO:0046872 ... Q8TBB1 29496391
    352133 5h7w:A (1.9) BS01 ZN 3.1.3.5 GO:0000166 ... A0A2I4HXH5 N/A
    352134 5h7w:A (1.9) BS02 ZN 3.1.3.5 GO:0000166 ... A0A2I4HXH5 N/A
    352135 5h7w:A (1.9) BS03 CA 3.1.3.5 GO:0000166 ... A0A2I4HXH5 N/A
    352136 5h7w:B (1.9) BS01 ZN 3.1.3.5 GO:0000166 ... A0A2I4HXH5 N/A
    352137 5h7w:B (1.9) BS02 ZN 3.1.3.5 GO:0000166 ... A0A2I4HXH5 N/A
    352138 5h7w:B (1.9) BS03 CA 3.1.3.5 GO:0000166 ... A0A2I4HXH5 N/A
    352139 5h7y:A (2.195) BS01 peptide ? N/A Q9I3K3 28979890
    352140 5h81:A (2.1) BS01 NAP ? GO:0000166 ... A0A1C7D193 27418042
    352141 5h81:A (2.1) BS02 ZN ? GO:0000166 ... A0A1C7D193 27418042
    352142 5h81:A (2.1) BS03 ZN ? GO:0000166 ... A0A1C7D193 27418042
    352143 5h81:B (2.1) BS01 NAP ? GO:0000166 ... A0A1C7D193 27418042
    352144 5h81:B (2.1) BS02 ZN ? GO:0000166 ... A0A1C7D193 27418042
    352145 5h81:B (2.1) BS03 ZN ? GO:0000166 ... A0A1C7D193 27418042
    352146 5h82:A (2.05) BS01 ZN ? GO:0000166 ... A0A1C7D193 27418042
    352147 5h82:A (2.05) BS02 ZN ? GO:0000166 ... A0A1C7D193 27418042
    352148 5h82:B (2.05) BS01 ZN ? GO:0000166 ... A0A1C7D193 27418042
    352149 5h82:B (2.05) BS02 ZN ? GO:0000166 ... A0A1C7D193 27418042
    352150 5h83:A (2.25) BS01 ZN ? GO:0008270 ... A0A1C7D195 27418042
    352151 5h83:A (2.25) BS02 ZN ? GO:0008270 ... A0A1C7D195 27418042
    352152 5h83:B (2.25) BS01 ZN ? GO:0008270 ... A0A1C7D195 27418042
    352153 5h83:B (2.25) BS02 ZN ? GO:0008270 ... A0A1C7D195 27418042
    352154 5h84:A (2.0) BS01 1VU 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q92830 27377381
    352155 5h85:A (1.701) BS01 5XS 2.3.1.-
    2.3.1.48
    N/A Q92793 30258543 BindingDB: Kd=20000nM
    352156 5h86:A (2.08) BS01 BCO 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q92830 27377381 MOAD: Ki=5.6uM
    352157 5h8b:A (2.55) BS01 5Y2 2.7.11.1 GO:0004672 ... P68400 26985319 BindingDB: IC50=<3.0nM, Kd=4.9nM
    352158 5h8b:B (2.55) BS01 5Y2 2.7.11.1 GO:0004672 ... P68400 26985319 BindingDB: IC50=<3.0nM, Kd=4.9nM
    352159 5h8c:A (2.29) BS01 SF4 3.6.4.12 GO:0003676 ... Q4JC68 26896802
    352160 5h8e:A (2.15) BS01 5Y3 2.7.11.1 GO:0004672 ... P68400 26985319 MOAD: Kd=6.33pM
    BindingDB: Kd=6.3nM, IC50=<3.0nM
    352161 5h8e:B (2.15) BS01 5Y3 2.7.11.1 GO:0004672 ... P68400 26985319 MOAD: Kd=6.33pM
    BindingDB: Kd=6.3nM, IC50=<3.0nM
    352162 5h8f:A (1.81) BS01 GLU ? GO:0015276 ... Q12879 26875626
    352163 5h8f:B (1.81) BS01 GLY ? GO:0015276 ... Q05586 26875626
    352164 5h8g:A (2.0) BS01 5Y4 2.7.11.1 GO:0004672 ... P68400 26985319 MOAD: Kd=48.2pM
    BindingDB: IC50=<3.0nM, Kd=48nM
    352165 5h8h:A (2.23) BS01 GLU ? GO:0015276 ... Q12879 26875626
    352166 5h8h:A (2.23) BS02 5YC ? GO:0015276 ... Q12879 26875626 BindingDB: EC50=1900nM
    352167 5h8h:B (2.23) BS01 GLY ? GO:0015276 ... Q05586 26875626
    352168 5h8h:B (2.23) BS02 5YC ? GO:0015276 ... Q05586 26875626
    352169 5h8i:B (1.97) BS01 N2H 3.5.1.53 GO:0006596 ... G7ITU5 27066023
    352170 5h8i:C (1.97) BS01 N2H 3.5.1.53 GO:0006596 ... G7ITU5 27066023
    352171 5h8i:D (1.97) BS01 N2H 3.5.1.53 GO:0006596 ... G7ITU5 27066023
    352172 5h8i:E (1.97) BS01 N2H 3.5.1.53 GO:0006596 ... G7ITU5 27066023
    352173 5h8i:F (1.97) BS01 N2H 3.5.1.53 GO:0006596 ... G7ITU5 27066023
    352174 5h8i:G (1.97) BS01 N2H 3.5.1.53 GO:0006596 ... G7ITU5 27066023
    352175 5h8i:J (1.97) BS01 N2H 3.5.1.53 GO:0006596 ... G7ITU5 27066023
    352176 5h8i:K (1.97) BS01 N2H 3.5.1.53 GO:0006596 ... G7ITU5 27066023
    352177 5h8i:L (1.97) BS01 N2H 3.5.1.53 GO:0006596 ... G7ITU5 27066023
    352178 5h8i:M (1.97) BS01 N2H 3.5.1.53 GO:0006596 ... G7ITU5 27066023
    352179 5h8i:N (1.97) BS01 N2H 3.5.1.53 GO:0006596 ... G7ITU5 27066023
    352180 5h8i:O (1.97) BS01 N2H 3.5.1.53 GO:0006596 ... G7ITU5 27066023
    352181 5h8j:B (2.19) BS01 N2P 3.5.1.53 GO:0006596 ... G7ITU5 27066023
    352182 5h8j:C (2.19) BS01 N2P 3.5.1.53 GO:0006596 ... G7ITU5 27066023
    352183 5h8j:D (2.19) BS01 N2P 3.5.1.53 GO:0006596 ... G7ITU5 27066023
    352184 5h8j:E (2.19) BS01 N2P 3.5.1.53 GO:0006596 ... G7ITU5 27066023
    352185 5h8j:F (2.19) BS01 N2P 3.5.1.53 GO:0006596 ... G7ITU5 27066023
    352186 5h8j:G (2.19) BS01 N2P 3.5.1.53 GO:0006596 ... G7ITU5 27066023
    352187 5h8j:J (2.19) BS01 N2P 3.5.1.53 GO:0006596 ... G7ITU5 27066023
    352188 5h8j:K (2.19) BS01 N2P 3.5.1.53 GO:0006596 ... G7ITU5 27066023
    352189 5h8j:L (2.19) BS01 N2P 3.5.1.53 GO:0006596 ... G7ITU5 27066023
    352190 5h8j:M (2.19) BS01 N2P 3.5.1.53 GO:0006596 ... G7ITU5 27066023
    352191 5h8j:N (2.19) BS01 N2P 3.5.1.53 GO:0006596 ... G7ITU5 27066023
    352192 5h8j:O (2.19) BS01 N2P 3.5.1.53 GO:0006596 ... G7ITU5 27066023
    352193 5h8l:B (2.29) BS01 PUT 3.5.1.53 GO:0006596 ... G7ITU5 27066023
    352194 5h8l:C (2.29) BS01 PUT 3.5.1.53 GO:0006596 ... G7ITU5 27066023
    352195 5h8l:D (2.29) BS01 PUT 3.5.1.53 GO:0006596 ... G7ITU5 27066023
    352196 5h8l:E (2.29) BS01 PUT 3.5.1.53 GO:0006596 ... G7ITU5 27066023
    352197 5h8l:F (2.29) BS01 PUT 3.5.1.53 GO:0006596 ... G7ITU5 27066023
    352198 5h8l:G (2.29) BS01 PUT 3.5.1.53 GO:0006596 ... G7ITU5 27066023
    352199 5h8l:J (2.29) BS01 PUT 3.5.1.53 GO:0006596 ... G7ITU5 27066023
    352200 5h8l:K (2.29) BS01 PUT 3.5.1.53 GO:0006596 ... G7ITU5 27066023

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).