SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    364201 5jkm:J (1.8) BS01 FE 1.16.3.1 GO:0004322 ... P02794 27617514
    364202 5jkm:J (1.8) BS02 MG 1.16.3.1 GO:0004322 ... P02794 27617514
    364203 5jkm:K (1.8) BS01 FE 1.16.3.1 GO:0004322 ... P02794 27617514
    364204 5jkm:K (1.8) BS02 MG 1.16.3.1 GO:0004322 ... P02794 27617514
    364205 5jkm:L (1.8) BS01 FE 1.16.3.1 GO:0004322 ... P02794 27617514
    364206 5jkm:L (1.8) BS02 MG 1.16.3.1 GO:0004322 ... P02794 27617514
    364207 5jkv:A (2.75) BS01 HEM 1.14.14.14 GO:0002677 ... P11511 29476820
    364208 5jkv:A (2.75) BS02 ASD 1.14.14.14 GO:0002677 ... P11511 29476820 BindingDB: IC50=300nM, Ki=20nM
    364209 5jkw:A (3.0) BS01 HEM 1.14.14.14 GO:0002677 ... P11511 29476820
    364210 5jkw:A (3.0) BS02 TES 1.14.14.14 GO:0002677 ... P11511 29476820 BindingDB: Ki=600nM
    364211 5jl6:A (3.0) BS01 HEM 1.14.14.14 GO:0002677 ... P11511 29476820
    364212 5jl6:A (3.0) BS02 ASD 1.14.14.14 GO:0002677 ... P11511 29476820 BindingDB: IC50=300nM, Ki=20nM
    364213 5jl7:A (3.1) BS01 HEM 1.14.14.14 GO:0002677 ... P11511 29476820
    364214 5jl7:A (3.1) BS02 ASD 1.14.14.14 GO:0002677 ... P11511 29476820 BindingDB: IC50=300nM, Ki=20nM
    364215 5jl9:A (3.1) BS01 HEM 1.14.14.14 GO:0002677 ... P11511 29476820
    364216 5jl9:A (3.1) BS02 ASD 1.14.14.14 GO:0002677 ... P11511 29476820 BindingDB: IC50=300nM, Ki=20nM
    364217 5jla:A (1.45) BS01 NAD ? GO:0000166 ... Q13GR0 N/A
    364218 5jla:B (1.45) BS01 NAD ? GO:0000166 ... Q13GR0 N/A
    364219 5jla:C (1.45) BS01 NAD ? GO:0000166 ... Q13GR0 N/A
    364220 5jla:D (1.45) BS01 NAD ? GO:0000166 ... Q13GR0 N/A
    364221 5jlb:A (1.5) BS01 peptide 2.1.1.-
    2.1.1.359
    GO:0005634 ... Q9BYW2 27474439
    364222 5jlb:A (1.5) BS02 SAH 2.1.1.-
    2.1.1.359
    GO:0005634 ... Q9BYW2 27474439
    364223 5jlb:A (1.5) BS03 ZN 2.1.1.-
    2.1.1.359
    GO:0005634 ... Q9BYW2 27474439
    364224 5jlb:A (1.5) BS04 ZN 2.1.1.-
    2.1.1.359
    GO:0005634 ... Q9BYW2 27474439
    364225 5jlb:A (1.5) BS05 ZN 2.1.1.-
    2.1.1.359
    GO:0005634 ... Q9BYW2 27474439
    364226 5jlc:A (2.4) BS01 HEM 1.14.14.154 GO:0004497 ... P50859 30126961
    364227 5jlc:A (2.4) BS02 1YN 1.14.14.154 GO:0004497 ... P50859 30126961
    364228 5jle:A (2.4) BS01 ZN 2.1.1.-
    2.1.1.359
    GO:0005634 ... Q9BYW2 27474439
    364229 5jle:A (2.4) BS02 ZN 2.1.1.-
    2.1.1.359
    GO:0005634 ... Q9BYW2 27474439
    364230 5jle:A (2.4) BS03 ZN 2.1.1.-
    2.1.1.359
    GO:0005634 ... Q9BYW2 27474439
    364231 5jle:A (2.4) BS04 SAH 2.1.1.-
    2.1.1.359
    GO:0005634 ... Q9BYW2 27474439
    364232 5jlf:A (3.6) BS01 ADP 3.6.4.- GO:0000287 ... P68135 27324845
    364233 5jlf:B (3.6) BS01 ADP 3.6.4.- GO:0000287 ... P68135 27324845
    364234 5jlf:C (3.6) BS01 ADP 3.6.4.- GO:0000287 ... P68135 27324845
    364235 5jlf:D (3.6) BS01 ADP 3.6.4.- GO:0000287 ... P68135 27324845
    364236 5jlf:E (3.6) BS01 ADP 3.6.4.- GO:0000287 ... P68135 27324845
    364237 5jlg:A (1.79) BS01 6L6 4.6.1.18 GO:0003676 ... P61823 27427335
    364238 5jlg:B (1.79) BS01 6L6 4.6.1.18 GO:0003676 ... P61823 27427335
    364239 5jlh:A (3.9) BS01 ADP 3.6.4.- GO:0001525 ... P63261 27324845
    364240 5jlh:B (3.9) BS01 ADP 3.6.4.- GO:0001525 ... P63261 27324845
    364241 5jlh:C (3.9) BS01 ADP 3.6.4.- GO:0001525 ... P63261 27324845
    364242 5jlh:D (3.9) BS01 ADP 3.6.4.- GO:0001525 ... P63261 27324845
    364243 5jlh:E (3.9) BS01 ADP 3.6.4.- GO:0001525 ... P63261 27324845
    364244 5jli:A (1.55) BS01 HEC ? GO:0005506 ... P00138 28451315
    364245 5jli:A (1.55) BS02 ASC ? GO:0005506 ... P00138 28451315
    364246 5jlj:A (2.5) BS01 GNP 3.6.5.- GO:0000054 ... P62826 27323910
    364247 5jlj:A (2.5) BS02 MG 3.6.5.- GO:0000054 ... P62826 27323910
    364248 5jlj:C (2.5) BS01 6L8 ? GO:0000055 ... P30822 27323910
    364249 5jlp:A (2.495) BS01 MG 3.1.3.3 GO:0000287 ... A0QJI1 N/A
    364250 5jlp:A (2.495) BS02 SER 3.1.3.3 GO:0000287 ... A0QJI1 N/A
    364251 5jlr:A (2.261) BS01 MG 3.1.3.3 GO:0000287 ... A0QJI1 N/A
    364252 5jlr:A (2.261) BS02 SER 3.1.3.3 GO:0000287 ... A0QJI1 N/A
    364253 5jls:A (2.7) BS01 ZN ? GO:0003677 ... A0A0H2USX5 N/A
    364254 5jlt:A (2.955) BS01 dna ? N/A P22915 29718457
    364255 5jlt:A (2.955) BS02 dna ? N/A P22915 29718457
    364256 5jlt:B (2.955) BS01 dna ? N/A P22915 29718457
    364257 5jlt:B (2.955) BS02 dna ? N/A P22915 29718457
    364258 5jlt:C (2.955) BS01 dna ? N/A P22915 29718457
    364259 5jlt:C (2.955) BS02 dna ? N/A P22915 29718457
    364260 5jlt:D (2.955) BS01 dna ? N/A P22915 29718457
    364261 5jlt:D (2.955) BS02 dna ? N/A P22915 29718457
    364262 5jlu:A (2.2) BS01 ZN ? GO:0003677 ... A0A0H2USX5 N/A
    364263 5jlw:A (2.088) BS01 dna ? GO:0000981 ... P02833 27271797
    364264 5jlw:A (2.088) BS02 dna ? GO:0000981 ... P02833 27271797
    364265 5jlw:D (2.088) BS01 dna ? GO:0000981 ... P02833 27271797
    364266 5jlw:D (2.088) BS02 dna ? GO:0000981 ... P02833 27271797
    364267 5jlx:A (2.748) BS01 dna ? GO:0000981 ... P02833 27271797
    364268 5jlx:A (2.748) BS02 dna ? GO:0000981 ... P02833 27271797
    364269 5jlx:D (2.748) BS01 dna ? GO:0000981 ... P02833 27271797
    364270 5jlx:D (2.748) BS02 dna ? GO:0000981 ... P02833 27271797
    364271 5jlz:A (1.99) BS01 peptide ? GO:0006955 ... P01903 27895642
    364272 5jlz:B (1.99) BS01 peptide ? GO:0006955 ... P01911 27895642
    364273 5jlz:C (1.99) BS01 peptide ? GO:0006955 ... P01903 27895642
    364274 5jlz:D (1.99) BS01 peptide ? GO:0006955 ... P01911 27895642
    364275 5jm1:A (1.95) BS01 peptide ? GO:0019862 ... P18670 27808459
    364276 5jm1:A (1.95) BS02 peptide ? GO:0019862 ... P18670 27808459
    364277 5jm1:A (1.95) BS03 peptide ? GO:0019862 ... P18670 27808459
    364278 5jm1:C (1.95) BS01 peptide ? GO:0019862 ... P18670 27808459
    364279 5jm1:C (1.95) BS02 peptide ? GO:0019862 ... P18670 27808459
    364280 5jm1:C (1.95) BS03 peptide ? GO:0019862 ... P18670 27808459
    364281 5jm1:E (1.95) BS01 peptide ? GO:0019862 ... P18670 27808459
    364282 5jm1:E (1.95) BS02 peptide ? GO:0019862 ... P18670 27808459
    364283 5jm1:E (1.95) BS03 peptide ? GO:0019862 ... P18670 27808459
    364284 5jm1:E (1.95) BS04 GAL ? GO:0019862 ... P18670 27808459
    364285 5jm1:E (1.95) BS05 GAL ? GO:0019862 ... P18670 27808459
    364286 5jm1:E (1.95) BS06 GLA ? GO:0019862 ... P18670 27808459
    364287 5jm1:G (1.95) BS01 peptide ? GO:0019862 ... P18670 27808459
    364288 5jm1:G (1.95) BS02 peptide ? GO:0019862 ... P18670 27808459
    364289 5jm1:G (1.95) BS03 peptide ? GO:0019862 ... P18670 27808459
    364290 5jm1:G (1.95) BS04 AMG ? GO:0019862 ... P18670 27808459
    364291 5jm4:A (2.34) BS01 peptide ? GO:0000122 ... P63104 29028171
    364292 5jm4:B (2.34) BS01 peptide ? GO:0000122 ... P63104 29028171
    364293 5jm6:A (2.758) BS01 ZN ? GO:0000324 ... G0SG74 27266708
    364294 5jm6:A (2.758) BS02 ZN ? GO:0000324 ... G0SG74 27266708
    364295 5jm6:B (2.758) BS01 ZN ? GO:0000324 ... G0SG74 27266708
    364296 5jm6:B (2.758) BS02 ZN ? GO:0000324 ... G0SG74 27266708
    364297 5jm6:C (2.758) BS01 ZN ? GO:0000324 ... G0SG74 27266708
    364298 5jm6:C (2.758) BS02 ZN ? GO:0000324 ... G0SG74 27266708
    364299 5jm6:D (2.758) BS01 ZN ? GO:0000324 ... G0SG74 27266708
    364300 5jm6:D (2.758) BS02 ZN ? GO:0000324 ... G0SG74 27266708
    364301 5jm6:E (2.758) BS01 ZN ? GO:0000324 ... G0SG74 27266708
    364302 5jm6:E (2.758) BS02 ZN ? GO:0000324 ... G0SG74 27266708
    364303 5jm6:F (2.758) BS01 ZN ? GO:0000324 ... G0SG74 27266708
    364304 5jm6:F (2.758) BS02 ZN ? GO:0000324 ... G0SG74 27266708
    364305 5jm8:A (2.2) BS01 ATP ? GO:0005524 ... A0A1A9TA96 27253399
    364306 5jm8:A (2.2) BS02 MG ? GO:0005524 ... A0A1A9TA96 27253399
    364307 5jm8:B (2.2) BS01 ATP ? GO:0005524 ... A0A1A9TA96 27253399
    364308 5jm8:B (2.2) BS02 MG ? GO:0005524 ... A0A1A9TA96 27253399
    364309 5jm8:C (2.2) BS01 ATP ? GO:0005524 ... A0A1A9TA96 27253399
    364310 5jm8:C (2.2) BS02 MG ? GO:0005524 ... A0A1A9TA96 27253399
    364311 5jm8:D (2.2) BS01 ATP ? GO:0005524 ... A0A1A9TA96 27253399
    364312 5jm8:D (2.2) BS02 MG ? GO:0005524 ... A0A1A9TA96 27253399
    364313 5jm8:E (2.2) BS01 ATP ? GO:0005524 ... A0A1A9TA96 27253399
    364314 5jm8:E (2.2) BS02 MG ? GO:0005524 ... A0A1A9TA96 27253399
    364315 5jm8:F (2.2) BS01 ATP ? GO:0005524 ... A0A1A9TA96 27253399
    364316 5jm8:F (2.2) BS02 MG ? GO:0005524 ... A0A1A9TA96 27253399
    364317 5jm8:G (2.2) BS01 ATP ? GO:0005524 ... A0A1A9TA96 27253399
    364318 5jm8:G (2.2) BS02 MG ? GO:0005524 ... A0A1A9TA96 27253399
    364319 5jm8:H (2.2) BS01 ATP ? GO:0005524 ... A0A1A9TA96 27253399
    364320 5jm8:H (2.2) BS02 MG ? GO:0005524 ... A0A1A9TA96 27253399
    364321 5jma:A (2.03) BS01 SER 3.1.3.3 GO:0000287 ... A0QJI1 N/A
    364322 5jma:A (2.03) BS02 MG 3.1.3.3 GO:0000287 ... A0QJI1 N/A
    364323 5jmd:A (2.4) BS01 MG ? GO:0016829 ... Q89YS4 27621378
    364324 5jme:A (2.336) BS01 peptide ? GO:0004888 ... Q8WSF8 N/A
    364325 5jme:A (2.336) BS02 peptide ? GO:0004888 ... Q8WSF8 N/A
    364326 5jme:B (2.336) BS01 peptide ? GO:0004888 ... Q8WSF8 N/A
    364327 5jme:B (2.336) BS02 peptide ? GO:0004888 ... Q8WSF8 N/A
    364328 5jme:C (2.336) BS01 peptide ? GO:0004888 ... Q8WSF8 N/A
    364329 5jme:C (2.336) BS02 peptide ? GO:0004888 ... Q8WSF8 N/A
    364330 5jme:D (2.336) BS01 peptide ? GO:0004888 ... Q8WSF8 N/A
    364331 5jme:E (2.336) BS01 peptide ? GO:0004888 ... Q8WSF8 N/A
    364332 5jmf:A (1.854) BS01 MG ? GO:0016829 ... Q89YS4 27621378
    364333 5jmm:A (2.1) BS01 peptide ? N/A P03372 N/A
    364334 5jmm:A (2.1) BS02 QSO ? N/A P03372 N/A
    364335 5jmm:B (2.1) BS01 peptide ? N/A P03372 N/A
    364336 5jmm:B (2.1) BS02 QSO ? N/A P03372 N/A
    364337 5jmn:A (2.5) BS01 FUA ? GO:0005515 ... P31224 27982032
    364338 5jmn:B (2.5) BS01 FUA ? GO:0005515 ... P31224 27982032
    364339 5jmn:C (2.5) BS01 FUA ? GO:0005515 ... P31224 27982032
    364340 5jmo:A (1.998) BS01 peptide 3.4.21.75 GO:0004252 ... P09958 27670069
    364341 5jmo:A (1.998) BS02 peptide 3.4.21.75 GO:0004252 ... P09958 27670069
    364342 5jmo:A (1.998) BS03 CA 3.4.21.75 GO:0004252 ... P09958 27670069
    364343 5jmo:A (1.998) BS04 CA 3.4.21.75 GO:0004252 ... P09958 27670069
    364344 5jmo:A (1.998) BS05 CA 3.4.21.75 GO:0004252 ... P09958 27670069
    364345 5jmo:B (1.998) BS01 peptide 3.4.21.75 GO:0004252 ... P09958 27670069
    364346 5jmo:B (1.998) BS02 CA 3.4.21.75 GO:0004252 ... P09958 27670069
    364347 5jmo:B (1.998) BS03 CA 3.4.21.75 GO:0004252 ... P09958 27670069
    364348 5jmo:B (1.998) BS04 CA 3.4.21.75 GO:0004252 ... P09958 27670069
    364349 5jmp:A (1.7) BS01 LC7 1.1.1.267 GO:0008299 ... Q8IKG4 27487410 MOAD: ic50=0.067uM
    364350 5jmp:A (1.7) BS02 MN 1.1.1.267 GO:0008299 ... Q8IKG4 27487410
    364351 5jmp:B (1.7) BS01 LC7 1.1.1.267 GO:0008299 ... Q8IKG4 27487410 MOAD: ic50=0.067uM
    364352 5jmp:B (1.7) BS02 MN 1.1.1.267 GO:0008299 ... Q8IKG4 27487410
    364353 5jmp:B (1.7) BS03 6LB 1.1.1.267 GO:0008299 ... Q8IKG4 27487410
    364354 5jmq:A (1.795) BS01 CA ? GO:0008168 ... Q3UKX1 27879050
    364355 5jmq:A (1.795) BS02 6LC ? GO:0008168 ... Q3UKX1 27879050
    364356 5jms:A (2.3) BS01 6LP ? GO:0004672 ... Q9BJF5 N/A
    364357 5jms:A (2.3) BS02 CA ? GO:0004672 ... Q9BJF5 N/A
    364358 5jmu:A (1.54) BS01 ZN ? GO:0005975 ... C4ZEZ9 N/A
    364359 5jmv:A (3.38647) BS01 AMP 2.3.1.234
    2.7.11.1
    GO:0000408 ... Q58530 27302132
    364360 5jmv:A (3.38647) BS02 MG 2.3.1.234
    2.7.11.1
    GO:0000408 ... Q58530 27302132
    364361 5jmv:B (3.38647) BS01 AMP 2.3.1.234
    2.7.11.1
    GO:0000408 ... Q58530 27302132
    364362 5jmv:B (3.38647) BS02 MG 2.3.1.234
    2.7.11.1
    GO:0000408 ... Q58530 27302132
    364363 5jmv:C (3.38647) BS01 AMP 2.3.1.234
    2.7.11.1
    GO:0000408 ... Q58530 27302132
    364364 5jmv:C (3.38647) BS02 MG 2.3.1.234
    2.7.11.1
    GO:0000408 ... Q58530 27302132
    364365 5jmw:A (1.55) BS01 L50 1.1.1.267 GO:0008299 ... Q8IKG4 27487410 MOAD: ic50=0.175uM
    364366 5jmw:A (1.55) BS02 MN 1.1.1.267 GO:0008299 ... Q8IKG4 27487410
    364367 5jmw:B (1.55) BS01 L50 1.1.1.267 GO:0008299 ... Q8IKG4 27487410 MOAD: ic50=0.175uM
    364368 5jmw:B (1.55) BS02 MN 1.1.1.267 GO:0008299 ... Q8IKG4 27487410
    364369 5jmx:A (1.44) BS01 ZN 3.5.2.6 GO:0008270 ... P04190 29655609
    364370 5jmx:A (1.44) BS02 ZN 3.5.2.6 GO:0008270 ... P04190 29655609
    364371 5jmx:A (1.44) BS03 DZ5 3.5.2.6 GO:0008270 ... P04190 29655609 BindingDB: IC50=8200nM
    364372 5jmy:A (2.0) BS01 ZN 3.4.24.11 GO:0001786 ... P08473 27302413
    364373 5jmy:A (2.0) BS02 6LD 3.4.24.11 GO:0001786 ... P08473 27302413 BindingDB: IC50=20nM
    364374 5jmy:B (2.0) BS01 ZN 3.4.24.11 GO:0001786 ... P08473 27302413
    364375 5jmy:B (2.0) BS02 6LD 3.4.24.11 GO:0001786 ... P08473 27302413 BindingDB: IC50=20nM
    364376 5jmz:A (1.9) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    364377 5jmz:A (1.9) BS02 AYX 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A BindingDB: Ki=15nM
    364378 5jn2:A (2.2) BS01 6LO ? GO:0004672 ... Q9BJF5 N/A
    364379 5jn2:A (2.2) BS02 CA ? GO:0004672 ... Q9BJF5 N/A
    364380 5jn3:A (1.6) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    364381 5jn3:A (1.6) BS02 WWZ 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A BindingDB: Ki=960nM
    364382 5jn5:A (1.75) BS01 CA 5.4.2.2 GO:0000287 ... P36871 28117557
    364383 5jn5:B (1.75) BS01 CA 5.4.2.2 GO:0000287 ... P36871 28117557
    364384 5jn7:A (1.517) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    364385 5jn7:A (1.517) BS02 6LU 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A BindingDB: Ki=1765nM
    364386 5jn8:A (1.85) BS01 AZM 4.2.1.1 GO:0004089 ... P22748 28975383 BindingDB: Ki=74nM, Kd=100nM, IC50=17.5nM
    364387 5jn8:A (1.85) BS02 ZN 4.2.1.1 GO:0004089 ... P22748 28975383
    364388 5jn8:A (1.85) BS03 SO4 4.2.1.1 GO:0004089 ... P22748 28975383
    364389 5jn8:A (1.85) BS04 SO4 4.2.1.1 GO:0004089 ... P22748 28975383
    364390 5jn8:A (1.85) BS05 ACT 4.2.1.1 GO:0004089 ... P22748 28975383
    364391 5jn8:B (1.85) BS01 AZM 4.2.1.1 GO:0004089 ... P22748 28975383 BindingDB: Ki=74nM, Kd=100nM, IC50=17.5nM
    364392 5jn8:B (1.85) BS02 ZN 4.2.1.1 GO:0004089 ... P22748 28975383
    364393 5jn8:B (1.85) BS03 SO4 4.2.1.1 GO:0004089 ... P22748 28975383
    364394 5jn8:B (1.85) BS04 SO4 4.2.1.1 GO:0004089 ... P22748 28975383
    364395 5jn8:C (1.85) BS01 AZM 4.2.1.1 GO:0004089 ... P22748 28975383 BindingDB: Ki=74nM, Kd=100nM, IC50=17.5nM
    364396 5jn8:C (1.85) BS02 ZN 4.2.1.1 GO:0004089 ... P22748 28975383
    364397 5jn8:C (1.85) BS03 SO4 4.2.1.1 GO:0004089 ... P22748 28975383
    364398 5jn8:C (1.85) BS04 SO4 4.2.1.1 GO:0004089 ... P22748 28975383
    364399 5jn8:D (1.85) BS01 AZM 4.2.1.1 GO:0004089 ... P22748 28975383 BindingDB: Ki=74nM, Kd=100nM, IC50=17.5nM
    364400 5jn8:D (1.85) BS02 ZN 4.2.1.1 GO:0004089 ... P22748 28975383

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).