SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 1929 1930 1931 1932 1933 1934 1935 1936 1937 1938 1939 1940 1941 1942 1943 1944 1945 1946 1947 1948 1949 > >>
    Go to page

    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    387601 5o2d:A (1.6) BS01 9HH 2.4.2.- N/A Q460N5 28991428 BindingDB: IC50=900nM, Kd=2100nM
    387602 5o2e:A (1.3) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 30466711
    387603 5o2e:A (1.3) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 30466711
    387604 5o2e:A (1.3) BS03 3S0 3.5.2.6 GO:0008270 ... C7C422 30466711
    387605 5o2e:A (1.3) BS04 3S0 3.5.2.6 GO:0008270 ... C7C422 30466711
    387606 5o2e:B (1.3) BS01 3S0 3.5.2.6 GO:0008270 ... C7C422 30466711
    387607 5o2e:B (1.3) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 30466711
    387608 5o2e:B (1.3) BS03 ZN 3.5.2.6 GO:0008270 ... C7C422 30466711
    387609 5o2e:B (1.3) BS04 3S0 3.5.2.6 GO:0008270 ... C7C422 30466711
    387610 5o2f:A (2.01) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 30466711
    387611 5o2f:A (2.01) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 30466711
    387612 5o2f:A (2.01) BS03 ZZ7 3.5.2.6 GO:0008270 ... C7C422 30466711
    387613 5o2f:A (2.01) BS04 ZZ7 3.5.2.6 GO:0008270 ... C7C422 30466711
    387614 5o2f:B (2.01) BS01 ZZ7 3.5.2.6 GO:0008270 ... C7C422 30466711
    387615 5o2f:B (2.01) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 30466711
    387616 5o2f:B (2.01) BS03 ZN 3.5.2.6 GO:0008270 ... C7C422 30466711
    387617 5o2f:B (2.01) BS04 ZZ7 3.5.2.6 GO:0008270 ... C7C422 30466711
    387618 5o2j:A (1.52) BS01 2PO ? GO:0043190 ... O69052 29170493 MOAD: Kd=0.24uM
    387619 5o2l:A (2.2) BS01 ADP ? GO:0003774 ... Q29122 29844196
    387620 5o2l:A (2.2) BS02 MG ? GO:0003774 ... Q29122 29844196
    387621 5o2l:A (2.2) BS03 BEF ? GO:0003774 ... Q29122 29844196
    387622 5o2r:0 (3.4) BS01 rna ? GO:0000027 ... P0A7N4 28741611
    387623 5o2r:1 (3.4) BS01 rna ? GO:0000027 ... P0A7N9 28741611
    387624 5o2r:2 (3.4) BS01 rna ? GO:0002181 ... P0A7P5 28741611
    387625 5o2r:3 (3.4) BS01 rna ? GO:0002181 ... P0A7Q1 28741611
    387626 5o2r:4 (3.4) BS01 rna ? GO:0002181 ... P0A7Q6 28741611
    387627 5o2r:5 (3.4) BS01 rna ? GO:0003735 ... P0A7J3 28741611
    387628 5o2r:6 (3.4) BS01 rna ? GO:0002181 ... P0A7M9 28741611
    387629 5o2r:C (3.4) BS01 rna ? GO:0000027 ... P60422 28741611
    387630 5o2r:D (3.4) BS01 rna ? GO:0000027 ... P60438 28741611
    387631 5o2r:E (3.4) BS01 rna ? GO:0001070 ... P60723 28741611
    387632 5o2r:F (3.4) BS01 rna ? GO:0000027 ... P62399 28741611
    387633 5o2r:F (3.4) BS02 rna ? GO:0000027 ... P62399 28741611
    387634 5o2r:F (3.4) BS03 rna ? GO:0000027 ... P62399 28741611
    387635 5o2r:G (3.4) BS01 rna ? GO:0000027 ... P0AG55 28741611
    387636 5o2r:H (3.4) BS01 rna ? GO:0002181 ... P0A7R1 28741611
    387637 5o2r:I (3.4) BS01 rna ? GO:0000027 ... P0A7J7 28741611
    387638 5o2r:J (3.4) BS01 rna ? GO:0002181 ... P0AA10 28741611
    387639 5o2r:K (3.4) BS01 rna ? GO:0002181 ... P0ADY3 28741611
    387640 5o2r:K (3.4) BS02 rna ? GO:0002181 ... P0ADY3 28741611
    387641 5o2r:L (3.4) BS01 rna ? GO:0002181 ... P02413 28741611
    387642 5o2r:M (3.4) BS01 rna ? GO:0000027 ... P0ADY7 28741611
    387643 5o2r:M (3.4) BS02 rna ? GO:0000027 ... P0ADY7 28741611
    387644 5o2r:N (3.4) BS01 rna ? GO:0000027 ... P0AG44 28741611
    387645 5o2r:O (3.4) BS01 rna ? GO:0002181 ... P0C018 28741611
    387646 5o2r:O (3.4) BS02 rna ? GO:0002181 ... P0C018 28741611
    387647 5o2r:P (3.4) BS01 rna ? GO:0000027 ... P0A7K6 28741611
    387648 5o2r:P (3.4) BS02 rna ? GO:0000027 ... P0A7K6 28741611
    387649 5o2r:Q (3.4) BS01 rna ? GO:0000027 ... P0A7L3 28741611
    387650 5o2r:R (3.4) BS01 rna ? GO:0002181 ... P0AG48 28741611
    387651 5o2r:S (3.4) BS01 rna ? GO:0002181 ... P61175 28741611
    387652 5o2r:T (3.4) BS01 rna ? GO:0000027 ... P0ADZ0 28741611
    387653 5o2r:U (3.4) BS01 rna ? GO:0000027 ... P60624 28741611
    387654 5o2r:V (3.4) BS01 rna ? GO:0000027 ... P68919 28741611
    387655 5o2r:V (3.4) BS02 rna ? GO:0000027 ... P68919 28741611
    387656 5o2r:W (3.4) BS01 rna ? GO:0003735 ... P0A7L8 28741611
    387657 5o2r:W (3.4) BS02 rna ? GO:0003735 ... P0A7L8 28741611
    387658 5o2r:X (3.4) BS01 rna ? GO:0000027 ... P0A7M2 28741611
    387659 5o2r:Y (3.4) BS01 rna ? GO:0000027 ... P0A7M6 28741611
    387660 5o2r:Z (3.4) BS01 rna ? GO:0000027 ... P0AG51 28741611
    387661 5o2r:Z (3.4) BS02 rna ? GO:0000027 ... P0AG51 28741611
    387662 5o2r:b (3.4) BS01 rna ? GO:0000028 ... P0A7V0 28741611
    387663 5o2r:c (3.4) BS01 rna ? GO:0003676 ... P0A7V3 28741611
    387664 5o2r:d (3.4) BS01 rna ? GO:0000028 ... P0A7V8 28741611
    387665 5o2r:e (3.4) BS01 rna ? GO:0000028 ... P0A7W1 28741611
    387666 5o2r:f (3.4) BS01 rna ? GO:0003735 ... P02358 28741611
    387667 5o2r:g (3.4) BS01 rna ? GO:0003723 ... P02359 28741611
    387668 5o2r:h (3.4) BS01 rna ? GO:0000028 ... P0A7W7 28741611
    387669 5o2r:i (3.4) BS01 rna ? GO:0000049 ... P0A7X3 28741611
    387670 5o2r:j (3.4) BS01 rna ? GO:0000049 ... P0A7R5 28741611
    387671 5o2r:k (3.4) BS01 rna ? GO:0002181 ... P0A7R9 28741611
    387672 5o2r:l (3.4) BS01 rna ? GO:0000049 ... P0A7S3 28741611
    387673 5o2r:m (3.4) BS01 rna ? GO:0000049 ... P0A7S9 28741611
    387674 5o2r:n (3.4) BS01 rna ? GO:0003735 ... P0AG59 28741611
    387675 5o2r:o (3.4) BS01 rna ? GO:0000028 ... P0ADZ4 28741611
    387676 5o2r:o (3.4) BS02 rna ? GO:0000028 ... P0ADZ4 28741611
    387677 5o2r:p (3.4) BS01 rna ? GO:0000028 ... P0A7T3 28741611
    387678 5o2r:q (3.4) BS01 rna ? GO:0000028 ... P0AG63 28741611
    387679 5o2r:r (3.4) BS01 rna ? GO:0003735 ... P0A7T7 28741611
    387680 5o2r:s (3.4) BS01 rna ? GO:0003723 ... P0A7U3 28741611
    387681 5o2r:t (3.4) BS01 rna ? GO:0000028 ... P0A7U7 28741611
    387682 5o2r:u (3.4) BS01 rna ? GO:0000028 ... P68679 28741611
    387683 5o2r:v (3.4) BS01 rna ? GO:0003747 ... P0A7I0 28741611
    387684 5o2r:v (3.4) BS02 rna ? GO:0003747 ... P0A7I0 28741611
    387685 5o2r:v (3.4) BS03 rna ? GO:0003747 ... P0A7I0 28741611
    387686 5o2r:v (3.4) BS04 rna ? GO:0003747 ... P0A7I0 28741611
    387687 5o2s:A (3.22) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 28706291
    387688 5o2s:C (3.22) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 28706291
    387689 5o2s:E (3.22) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 28706291
    387690 5o2s:G (3.22) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 28706291
    387691 5o2s:G (3.22) BS02 MG 3.6.5.2 GO:0003924 ... P01116 28706291
    387692 5o2t:A (2.19) BS01 MG 3.6.5.2 GO:0003924 ... P01116 28706291
    387693 5o2t:A (2.19) BS02 GSP 3.6.5.2 GO:0003924 ... P01116 28706291 MOAD: Kd=3.9nM
    387694 5o2w:A (2.0) BS01 MAN 3.2.1.4 N/A G0R6T8 28900033
    387695 5o2w:A (2.0) BS02 MAN 3.2.1.4 N/A G0R6T8 28900033
    387696 5o2w:A (2.0) BS03 MAN 3.2.1.4 N/A G0R6T8 28900033
    387697 5o2w:A (2.0) BS04 MAN 3.2.1.4 N/A G0R6T8 28900033
    387698 5o2w:A (2.0) BS05 MAN 3.2.1.4 N/A G0R6T8 28900033
    387699 5o2w:A (2.0) BS06 MAN 3.2.1.4 N/A G0R6T8 28900033
    387700 5o2w:A (2.0) BS07 MAN 3.2.1.4 N/A G0R6T8 28900033
    387701 5o2w:A (2.0) BS08 MAN 3.2.1.4 N/A G0R6T8 28900033
    387702 5o2w:A (2.0) BS09 MAN 3.2.1.4 N/A G0R6T8 28900033
    387703 5o2w:A (2.0) BS10 CU 3.2.1.4 N/A G0R6T8 28900033
    387704 5o2x:A (0.95) BS01 MAN 3.2.1.4 N/A G0R6T8 28900033
    387705 5o2x:A (0.95) BS02 MAN 3.2.1.4 N/A G0R6T8 28900033
    387706 5o2x:A (0.95) BS03 MAN 3.2.1.4 N/A G0R6T8 28900033
    387707 5o2x:A (0.95) BS04 MAN 3.2.1.4 N/A G0R6T8 28900033
    387708 5o2x:A (0.95) BS05 MAN 3.2.1.4 N/A G0R6T8 28900033
    387709 5o2x:A (0.95) BS06 MAN 3.2.1.4 N/A G0R6T8 28900033
    387710 5o2x:A (0.95) BS07 MAN 3.2.1.4 N/A G0R6T8 28900033
    387711 5o2x:A (0.95) BS08 MAN 3.2.1.4 N/A G0R6T8 28900033
    387712 5o2x:A (0.95) BS09 MAN 3.2.1.4 N/A G0R6T8 28900033
    387713 5o2x:A (0.95) BS10 MAN 3.2.1.4 N/A G0R6T8 28900033
    387714 5o2x:A (0.95) BS11 CU 3.2.1.4 N/A G0R6T8 28900033
    387715 5o2y:A (-1.00) BS01 CA N/A GO:0015627 ... N/A 28993624
    387716 5o2z:A (1.7) BS01 CA ? GO:0051015 ... P06396 29069428
    387717 5o2z:B (1.7) BS01 CA ? GO:0051015 ... P06396 29069428
    387718 5o31:B (4.13) BS01 SF4 7.1.1.2 GO:0008137 ... P42026 29395787
    387719 5o31:E (4.13) BS01 FES 7.1.1.2 GO:0016491 ... P04394 29395787
    387720 5o31:F (4.13) BS01 FMN 7.1.1.2 GO:0005739 ... P25708 29395787
    387721 5o31:F (4.13) BS02 SF4 7.1.1.2 GO:0005739 ... P25708 29395787
    387722 5o31:G (4.13) BS01 SF4 7.1.1.2 GO:0005739 ... P15690 29395787
    387723 5o31:G (4.13) BS02 SF4 7.1.1.2 GO:0005739 ... P15690 29395787
    387724 5o31:G (4.13) BS03 FES 7.1.1.2 GO:0005739 ... P15690 29395787
    387725 5o31:I (4.13) BS01 SF4 7.1.1.2 GO:0016020 ... P42028 29395787
    387726 5o31:I (4.13) BS02 SF4 7.1.1.2 GO:0016020 ... P42028 29395787
    387727 5o31:P (4.13) BS01 NAP N/A N/A N/A 29395787
    387728 5o31:R (4.13) BS01 ZN ? GO:0006120 ... P23934 29395787
    387729 5o32:A (4.20621) BS01 CA ? GO:0004866 ... P01024 28671664
    387730 5o32:D (4.20621) BS01 CA 3.4.21.45 GO:0016020 ... P05156 28671664
    387731 5o32:D (4.20621) BS02 CA 3.4.21.45 GO:0016020 ... P05156 28671664
    387732 5o32:E (4.20621) BS01 CA ? GO:0004866 ... P01024 28671664
    387733 5o32:H (4.20621) BS01 CA 3.4.21.45 GO:0016020 ... P05156 28671664
    387734 5o32:H (4.20621) BS02 CA 3.4.21.45 GO:0016020 ... P05156 28671664
    387735 5o33:A (1.64) BS01 GDP 3.6.5.2 GO:0001764 ... P63000 N/A
    387736 5o36:A (2.6) BS01 SO4 ? N/A P0DOH7 29343583
    387737 5o36:A (2.6) BS02 SO4 ? N/A P0DOH7 29343583
    387738 5o36:A (2.6) BS03 SO4 ? N/A P0DOH7 29343583
    387739 5o36:A (2.6) BS04 SO4 ? N/A P0DOH7 29343583
    387740 5o36:A (2.6) BS05 SO4 ? N/A P0DOH7 29343583
    387741 5o36:A (2.6) BS06 POL ? N/A P0DOH7 29343583
    387742 5o37:A (1.37) BS01 GB ? GO:0043190 ... O69052 29170493 MOAD: Kd=40.64uM
    387743 5o38:A (1.2) BS01 9JB ? N/A P25440 29732121
    387744 5o38:A (1.2) BS02 DQW ? N/A P25440 29732121
    387745 5o39:A (1.74) BS01 31O ? N/A P25440 29732121 BindingDB: Kd=1470nM
    387746 5o39:A (1.74) BS02 DQW ? N/A P25440 29732121
    387747 5o3a:A (2.4) BS01 31P ? N/A P25440 29732121
    387748 5o3b:A (1.95) BS01 9HZ ? N/A P25440 29732121
    387749 5o3b:B (1.95) BS01 9HZ ? N/A P25440 29732121
    387750 5o3b:C (1.95) BS01 9HZ ? N/A P25440 29732121
    387751 5o3b:D (1.95) BS01 9HZ ? N/A P25440 29732121
    387752 5o3c:A (1.6) BS01 9J2 ? N/A P25440 29732121
    387753 5o3c:A (1.6) BS02 DQW ? N/A P25440 29732121
    387754 5o3d:A (1.6) BS01 9J5 ? N/A P25440 29732121
    387755 5o3d:A (1.6) BS02 DQW ? N/A P25440 29732121
    387756 5o3e:A (1.4) BS01 9HW ? N/A P25440 29732121
    387757 5o3e:A (1.4) BS02 DQW ? N/A P25440 29732121
    387758 5o3f:A (1.75) BS01 9HT ? N/A P25440 29732121
    387759 5o3f:A (1.75) BS02 DQW ? N/A P25440 29732121
    387760 5o3g:A (1.85) BS01 9J8 ? N/A P25440 29732121
    387761 5o3g:B (1.85) BS01 9J8 ? N/A P25440 29732121
    387762 5o3h:A (1.4) BS01 9HQ ? N/A P25440 29732121
    387763 5o3i:A (1.2) BS01 9HN ? N/A P25440 29732121
    387764 5o3i:A (1.2) BS02 DQW ? N/A P25440 29732121
    387765 5o3j:A (2.97) BS01 rna ? GO:0003676 ... P31483 28636238
    387766 5o3k:A (2.1) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    387767 5o3k:A (2.1) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    387768 5o3k:A (2.1) BS03 O 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    387769 5o3k:A (2.1) BS04 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    387770 5o3k:B (2.1) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    387771 5o3k:B (2.1) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    387772 5o3k:B (2.1) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    387773 5o3k:C (2.1) BS01 O 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    387774 5o3k:C (2.1) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    387775 5o3k:C (2.1) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    387776 5o3k:C (2.1) BS04 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    387777 5o3k:D (2.1) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    387778 5o3k:D (2.1) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    387779 5o3k:D (2.1) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    387780 5o3k:D (2.1) BS04 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    387781 5o3k:E (2.1) BS01 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    387782 5o3k:E (2.1) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    387783 5o3k:E (2.1) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    387784 5o3k:E (2.1) BS04 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    387785 5o3k:F (2.1) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    387786 5o3k:F (2.1) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    387787 5o3k:F (2.1) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    387788 5o3k:G (2.1) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    387789 5o3k:G (2.1) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    387790 5o3k:G (2.1) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    387791 5o3k:H (2.1) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    387792 5o3k:H (2.1) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    387793 5o3k:H (2.1) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    387794 5o3k:I (2.1) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    387795 5o3k:I (2.1) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    387796 5o3k:I (2.1) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    387797 5o3k:J (2.1) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    387798 5o3k:J (2.1) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    387799 5o3k:J (2.1) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    387800 5o3k:K (2.1) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).