SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    38601 1oba:A (2.45) BS02 CHT 3.2.1.17 GO:0003796 ... P15057 14527392 MOAD: Kd=3.6mM
    38602 1obb:A (1.9) BS01 GLC 3.2.1.20 GO:0003824 ... O33830 12588867
    38603 1obb:A (1.9) BS02 NAD 3.2.1.20 GO:0003824 ... O33830 12588867
    38604 1obb:B (1.9) BS01 GLC 3.2.1.20 GO:0003824 ... O33830 12588867
    38605 1obb:B (1.9) BS02 GLC 3.2.1.20 GO:0003824 ... O33830 12588867
    38606 1obb:B (1.9) BS03 NAD 3.2.1.20 GO:0003824 ... O33830 12588867
    38607 1obc:A (2.1) BS01 LEU 6.1.1.4 GO:0000166 ... Q72GM3 12718881
    38608 1obc:A (2.1) BS02 ZN 6.1.1.4 GO:0000166 ... Q72GM3 12718881
    38609 1obc:A (2.1) BS03 ZN 6.1.1.4 GO:0000166 ... Q72GM3 12718881
    38610 1obc:A (2.1) BS04 NVA 6.1.1.4 GO:0000166 ... Q72GM3 12718881
    38611 1obc:A (2.1) BS05 2AD 6.1.1.4 GO:0000166 ... Q72GM3 12718881
    38612 1obc:A (2.1) BS06 LMS 6.1.1.4 GO:0000166 ... Q72GM3 12718881
    38613 1obd:A (1.4) BS01 ATP 6.3.2.6 GO:0004639 ... P27616 N/A
    38614 1obd:A (1.4) BS02 MG 6.3.2.6 GO:0004639 ... P27616 N/A
    38615 1obd:A (1.4) BS03 AMP 6.3.2.6 GO:0004639 ... P27616 N/A
    38616 1obf:O (1.7) BS01 SO4 1.2.1.- GO:0006006 ... P83696 12777799
    38617 1obf:O (1.7) BS02 SO4 1.2.1.- GO:0006006 ... P83696 12777799
    38618 1obf:P (1.7) BS01 SO4 1.2.1.- GO:0006006 ... P83696 12777799
    38619 1obg:A (2.05) BS01 AMP 6.3.2.6 GO:0004639 ... P27616 N/A
    38620 1obg:A (2.05) BS02 AMP 6.3.2.6 GO:0004639 ... P27616 N/A
    38621 1obg:A (2.05) BS03 MG 6.3.2.6 GO:0004639 ... P27616 N/A
    38622 1obh:A (2.2) BS01 NVA 6.1.1.4 GO:0000166 ... Q72GM3 12718881
    38623 1obh:A (2.2) BS02 LMS 6.1.1.4 GO:0000166 ... Q72GM3 12718881
    38624 1obh:A (2.2) BS03 NVA 6.1.1.4 GO:0000166 ... Q72GM3 12718881
    38625 1obh:A (2.2) BS04 LMS 6.1.1.4 GO:0000166 ... Q72GM3 12718881
    38626 1obm:A (1.85) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 9545280
    38627 1obn:A (1.3) BS01 ASV 1.21.3.1 GO:0005506 ... P05326 12622704
    38628 1obn:A (1.3) BS02 FE2 1.21.3.1 GO:0005506 ... P05326 12622704
    38629 1obn:A (1.3) BS03 HOA 1.21.3.1 GO:0005506 ... P05326 12622704
    38630 1obo:A (1.2) BS01 FMN ? GO:0005515 ... P0A3E0 12682068 MOAD: Kd=6.72nM
    38631 1obo:B (1.2) BS01 FMN ? GO:0005515 ... P0A3E0 12682068 MOAD: Kd=6.72nM
    38632 1obr:A (2.3) BS01 ZN 3.4.17.18 GO:0004181 ... P29068 1521526
    38633 1obr:A (2.3) BS02 CA 3.4.17.18 GO:0004181 ... P29068 1521526
    38634 1obr:A (2.3) BS03 CA 3.4.17.18 GO:0004181 ... P29068 1521526
    38635 1obr:A (2.3) BS04 CA 3.4.17.18 GO:0004181 ... P29068 1521526
    38636 1obr:A (2.3) BS05 CA 3.4.17.18 GO:0004181 ... P29068 1521526
    38637 1obt:A (2.8) BS01 AMP 3.2.2.22 GO:0017148 ... P02879 8780513
    38638 1obv:A (2.1) BS01 FMN ? GO:0005515 ... P0A3E0 12682068 MOAD: Kd=1.04nM
    38639 1obw:A (1.9) BS01 MG 3.6.1.1 GO:0000287 ... P0A7A9 9201917
    38640 1obw:B (1.9) BS01 MG 3.6.1.1 GO:0000287 ... P0A7A9 9201917
    38641 1obw:C (1.9) BS01 MG 3.6.1.1 GO:0000287 ... P0A7A9 9201917
    38642 1obx:A (1.35) BS01 peptide ? N/A O00560 12842047
    38643 1oby:A (1.85) BS01 peptide ? N/A O00560 12842047
    38644 1oby:A (1.85) BS02 peptide ? N/A O00560 12842047
    38645 1oby:B (1.85) BS01 peptide ? N/A O00560 12842047
    38646 1oby:B (1.85) BS02 peptide ? N/A O00560 12842047
    38647 1obz:A (1.7) BS01 peptide ? N/A O00560 12842047
    38648 1oc1:A (2.2) BS01 ASV 1.21.3.1 GO:0005506 ... P05326 12622704
    38649 1oc1:A (2.2) BS02 FE2 1.21.3.1 GO:0005506 ... P05326 12622704
    38650 1oc2:A (1.5) BS01 TDX 4.2.1.46 GO:0008460 ... Q8GIP9 14505409
    38651 1oc2:A (1.5) BS02 NAD 4.2.1.46 GO:0008460 ... Q8GIP9 14505409
    38652 1oc2:B (1.5) BS01 NAD 4.2.1.46 GO:0008460 ... Q8GIP9 14505409
    38653 1oc2:B (1.5) BS02 TDX 4.2.1.46 GO:0008460 ... Q8GIP9 14505409
    38654 1oc4:A (2.3) BS01 NAD 1.1.1.27 GO:0003824 ... Q7SI97 12967707
    38655 1oc4:B (2.3) BS01 NAD 1.1.1.27 GO:0003824 ... Q7SI97 12967707
    38656 1oc5:A (1.7) BS01 BGC 3.2.1.91 GO:0004553 ... Q9C1S9 12842048
    38657 1oc5:A (1.7) BS02 BGC 3.2.1.91 GO:0004553 ... Q9C1S9 12842048
    38658 1oc7:A (1.11) BS01 SGC 3.2.1.91 GO:0004553 ... Q9C1S9 12842048
    38659 1oc7:A (1.11) BS02 SGC 3.2.1.91 GO:0004553 ... Q9C1S9 12842048
    38660 1oc7:A (1.11) BS03 BGC 3.2.1.91 GO:0004553 ... Q9C1S9 12842048
    38661 1ocb:A (1.75) BS01 GTM 3.2.1.91 GO:0004553 ... Q9C1S9 12842048
    38662 1ocb:A (1.75) BS02 BGC 3.2.1.91 GO:0004553 ... Q9C1S9 12842048
    38663 1ocb:A (1.75) BS03 BGC 3.2.1.91 GO:0004553 ... Q9C1S9 12842048
    38664 1ocb:A (1.75) BS04 GDA 3.2.1.91 GO:0004553 ... Q9C1S9 12842048
    38665 1ocb:A (1.75) BS05 GTM 3.2.1.91 GO:0004553 ... Q9C1S9 12842048
    38666 1ocb:A (1.75) BS06 BGC 3.2.1.91 GO:0004553 ... Q9C1S9 12842048
    38667 1ocb:B (1.75) BS01 BGC 3.2.1.91 GO:0004553 ... Q9C1S9 12842048
    38668 1ocb:B (1.75) BS02 BGC 3.2.1.91 GO:0004553 ... Q9C1S9 12842048
    38669 1ocb:B (1.75) BS03 GDA 3.2.1.91 GO:0004553 ... Q9C1S9 12842048
    38670 1ocb:B (1.75) BS04 GTM 3.2.1.91 GO:0004553 ... Q9C1S9 12842048
    38671 1ocb:B (1.75) BS05 BGC 3.2.1.91 GO:0004553 ... Q9C1S9 12842048
    38672 1ocb:B (1.75) BS06 BGC 3.2.1.91 GO:0004553 ... Q9C1S9 12842048
    38673 1ocb:B (1.75) BS07 FLG 3.2.1.91 GO:0004553 ... Q9C1S9 12842048
    38674 1occ:A (2.8) BS01 CU 7.1.1.9 GO:0004129 ... P00396 8638158
    38675 1occ:A (2.8) BS02 MG 7.1.1.9 GO:0004129 ... P00396 8638158
    38676 1occ:A (2.8) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 8638158
    38677 1occ:A (2.8) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 8638158
    38678 1occ:B (2.8) BS01 CU 7.1.1.9 GO:0004129 ... P68530 8638158
    38679 1occ:B (2.8) BS02 CU 7.1.1.9 GO:0004129 ... P68530 8638158
    38680 1occ:F (2.8) BS01 ZN 1.9.3.1 GO:0005740 ... P00428 8638158
    38681 1occ:N (2.8) BS01 CU 7.1.1.9 GO:0004129 ... P00396 8638158
    38682 1occ:N (2.8) BS02 MG 7.1.1.9 GO:0004129 ... P00396 8638158
    38683 1occ:N (2.8) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 8638158
    38684 1occ:N (2.8) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 8638158
    38685 1occ:O (2.8) BS01 CU 7.1.1.9 GO:0004129 ... P68530 8638158
    38686 1occ:O (2.8) BS02 CU 7.1.1.9 GO:0004129 ... P68530 8638158
    38687 1occ:S (2.8) BS01 ZN 1.9.3.1 GO:0005740 ... P00428 8638158
    38688 1ocd:A (-1.00) BS01 HEC ? GO:0005515 ... P00004 8823161
    38689 1oce:A (2.7) BS01 MF2 3.1.1.7 GO:0001507 ... P04058 10231521
    38690 1ocj:A (1.3) BS01 MA3 3.2.1.91 GO:0004553 ... Q9C1S9 12842048
    38691 1ocj:A (1.3) BS02 SGC 3.2.1.91 GO:0004553 ... Q9C1S9 12842048
    38692 1ocj:A (1.3) BS03 SSG 3.2.1.91 GO:0004553 ... Q9C1S9 12842048
    38693 1ocj:A (1.3) BS04 SSG 3.2.1.91 GO:0004553 ... Q9C1S9 12842048
    38694 1ocj:A (1.3) BS05 BGC 3.2.1.91 GO:0004553 ... Q9C1S9 12842048
    38695 1ocm:A (1.9) BS01 POP ? GO:0003824 ... Q9ZIV5 12711609
    38696 1ocm:B (1.9) BS01 POP ? GO:0003824 ... Q9ZIV5 12711609
    38697 1ocn:A (1.31) BS01 IFM 3.2.1.91 GO:0004553 ... Q9C1S9 12744312
    38698 1ocn:A (1.31) BS02 BGC 3.2.1.91 GO:0004553 ... Q9C1S9 12744312
    38699 1ocn:A (1.31) BS03 IFM 3.2.1.91 GO:0004553 ... Q9C1S9 12744312
    38700 1ocn:A (1.31) BS04 BGC 3.2.1.91 GO:0004553 ... Q9C1S9 12744312
    38701 1oco:A (2.8) BS01 CU 7.1.1.9 GO:0004129 ... P00396 9624044
    38702 1oco:A (2.8) BS02 MG 7.1.1.9 GO:0004129 ... P00396 9624044
    38703 1oco:A (2.8) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 9624044
    38704 1oco:A (2.8) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 9624044
    38705 1oco:A (2.8) BS05 CMO 7.1.1.9 GO:0004129 ... P00396 9624044
    38706 1oco:B (2.8) BS01 CU 7.1.1.9 GO:0004129 ... P68530 9624044
    38707 1oco:B (2.8) BS02 CU 7.1.1.9 GO:0004129 ... P68530 9624044
    38708 1oco:F (2.8) BS01 ZN 1.9.3.1 GO:0005740 ... P00428 9624044
    38709 1oco:N (2.8) BS01 CU 7.1.1.9 GO:0004129 ... P00396 9624044
    38710 1oco:N (2.8) BS02 MG 7.1.1.9 GO:0004129 ... P00396 9624044
    38711 1oco:N (2.8) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 9624044
    38712 1oco:N (2.8) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 9624044
    38713 1oco:N (2.8) BS05 CMO 7.1.1.9 GO:0004129 ... P00396 9624044
    38714 1oco:O (2.8) BS01 CU 7.1.1.9 GO:0004129 ... P68530 9624044
    38715 1oco:O (2.8) BS02 CU 7.1.1.9 GO:0004129 ... P68530 9624044
    38716 1oco:S (2.8) BS01 ZN 1.9.3.1 GO:0005740 ... P00428 9624044
    38717 1ocq:A (1.08) BS01 IFM 3.2.1.4 GO:0000272 ... O85465 12812472
    38718 1ocq:A (1.08) BS02 BGC 3.2.1.4 GO:0000272 ... O85465 12812472
    38719 1ocr:A (2.35) BS01 CU 7.1.1.9 GO:0004129 ... P00396 9624044
    38720 1ocr:A (2.35) BS02 MG 7.1.1.9 GO:0004129 ... P00396 9624044
    38721 1ocr:A (2.35) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 9624044
    38722 1ocr:A (2.35) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 9624044
    38723 1ocr:B (2.35) BS01 CU 7.1.1.9 GO:0004129 ... P68530 9624044
    38724 1ocr:B (2.35) BS02 CU 7.1.1.9 GO:0004129 ... P68530 9624044
    38725 1ocr:F (2.35) BS01 ZN 1.9.3.1 GO:0005740 ... P00428 9624044
    38726 1ocr:N (2.35) BS01 CU 7.1.1.9 GO:0004129 ... P00396 9624044
    38727 1ocr:N (2.35) BS02 MG 7.1.1.9 GO:0004129 ... P00396 9624044
    38728 1ocr:N (2.35) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 9624044
    38729 1ocr:N (2.35) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 9624044
    38730 1ocr:O (2.35) BS01 CU 7.1.1.9 GO:0004129 ... P68530 9624044
    38731 1ocr:O (2.35) BS02 CU 7.1.1.9 GO:0004129 ... P68530 9624044
    38732 1ocr:S (2.35) BS01 ZN 1.9.3.1 GO:0005740 ... P00428 9624044
    38733 1oct:C (3.0) BS01 dna ? GO:0000981 ... P14859 8156594
    38734 1oct:C (3.0) BS02 dna ? GO:0000981 ... P14859 8156594
    38735 1ocu:A (2.3) BS01 PIB ? GO:0000139 ... Q08826 14514667
    38736 1ocu:B (2.3) BS01 PIB ? GO:0000139 ... Q08826 14514667
    38737 1ocy:A (1.5) BS01 ZN ? GO:0046872 ... P10930 12888344
    38738 1ocz:A (2.9) BS01 CU 7.1.1.9 GO:0004129 ... P00396 9624044
    38739 1ocz:A (2.9) BS02 MG 7.1.1.9 GO:0004129 ... P00396 9624044
    38740 1ocz:A (2.9) BS03 AZI 7.1.1.9 GO:0004129 ... P00396 9624044
    38741 1ocz:A (2.9) BS04 AZI 7.1.1.9 GO:0004129 ... P00396 9624044
    38742 1ocz:A (2.9) BS05 HEA 7.1.1.9 GO:0004129 ... P00396 9624044
    38743 1ocz:A (2.9) BS06 HEA 7.1.1.9 GO:0004129 ... P00396 9624044
    38744 1ocz:B (2.9) BS01 CU 7.1.1.9 GO:0004129 ... P68530 9624044
    38745 1ocz:B (2.9) BS02 CU 7.1.1.9 GO:0004129 ... P68530 9624044
    38746 1ocz:F (2.9) BS01 ZN 1.9.3.1 GO:0005740 ... P00428 9624044
    38747 1ocz:N (2.9) BS01 CU 7.1.1.9 GO:0004129 ... P00396 9624044
    38748 1ocz:N (2.9) BS02 MG 7.1.1.9 GO:0004129 ... P00396 9624044
    38749 1ocz:N (2.9) BS03 AZI 7.1.1.9 GO:0004129 ... P00396 9624044
    38750 1ocz:N (2.9) BS04 AZI 7.1.1.9 GO:0004129 ... P00396 9624044
    38751 1ocz:N (2.9) BS05 HEA 7.1.1.9 GO:0004129 ... P00396 9624044
    38752 1ocz:N (2.9) BS06 HEA 7.1.1.9 GO:0004129 ... P00396 9624044
    38753 1ocz:O (2.9) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 9624044
    38754 1ocz:O (2.9) BS02 CU 7.1.1.9 GO:0004129 ... P68530 9624044
    38755 1ocz:O (2.9) BS03 CU 7.1.1.9 GO:0004129 ... P68530 9624044
    38756 1ocz:S (2.9) BS01 ZN 1.9.3.1 GO:0005740 ... P00428 9624044
    38757 1od1:A (1.37) BS01 0QS 3.4.23.22 GO:0004190 ... P11838 12777758
    38758 1od2:A (2.7) BS01 ACO 6.3.4.14
    6.4.1.2
    GO:0003989 ... Q00955 12663926
    38759 1od2:B (2.7) BS01 ACO 6.3.4.14
    6.4.1.2
    GO:0003989 ... Q00955 12663926
    38760 1od2:B (2.7) BS02 ADE 6.3.4.14
    6.4.1.2
    GO:0003989 ... Q00955 12663926
    38761 1od3:A (1.0) BS01 BGC 3.2.1.8 GO:0030246 ... Q8GJ44 12634060
    38762 1od3:A (1.0) BS02 BGC 3.2.1.8 GO:0030246 ... Q8GJ44 12634060
    38763 1od3:A (1.0) BS03 BGC 3.2.1.8 GO:0030246 ... Q8GJ44 12634060
    38764 1od3:A (1.0) BS04 BGC 3.2.1.8 GO:0030246 ... Q8GJ44 12634060
    38765 1od3:A (1.0) BS05 CA 3.2.1.8 GO:0030246 ... Q8GJ44 12634060
    38766 1od4:C (2.7) BS01 ADE 6.3.4.14
    6.4.1.2
    GO:0003989 ... Q00955 12663926
    38767 1od5:A (2.1) BS01 CO3 ? GO:0045735 ... P04347 12771376
    38768 1od5:A (2.1) BS02 MG ? GO:0045735 ... P04347 12771376
    38769 1od5:B (2.1) BS01 MG ? GO:0045735 ... P04347 12771376
    38770 1od5:B (2.1) BS02 CO3 ? GO:0045735 ... P04347 12771376
    38771 1od6:A (1.5) BS01 PNS 2.7.7.3 GO:0003824 ... Q5SJS9 14684898
    38772 1od7:A (3.0) BS01 SUW ? N/A Q62230 12737821
    38773 1od8:A (1.05) BS01 XDL 3.2.1.8 GO:0004553 ... P26514 12744311
    38774 1od8:A (1.05) BS02 XYP 3.2.1.8 GO:0004553 ... P26514 12744311
    38775 1od8:A (1.05) BS03 XDL 3.2.1.8 GO:0004553 ... P26514 12744311
    38776 1od8:A (1.05) BS04 XYP 3.2.1.8 GO:0004553 ... P26514 12744311
    38777 1od9:A (2.1) BS01 BND ? N/A Q62230 12737821
    38778 1oda:A (3.31) BS01 BDU ? N/A Q62230 12737821
    38779 1odb:A (2.19) BS01 CA ? GO:0002548 ... P80511 12777802
    38780 1odb:A (2.19) BS02 CA ? GO:0002548 ... P80511 12777802
    38781 1odb:A (2.19) BS03 CU ? GO:0002548 ... P80511 12777802
    38782 1odb:B (2.19) BS01 CU ? GO:0002548 ... P80511 12777802
    38783 1odb:B (2.19) BS02 CU ? GO:0002548 ... P80511 12777802
    38784 1odb:B (2.19) BS03 CA ? GO:0002548 ... P80511 12777802
    38785 1odb:B (2.19) BS04 CA ? GO:0002548 ... P80511 12777802
    38786 1odb:C (2.19) BS01 CU ? GO:0002548 ... P80511 12777802
    38787 1odb:C (2.19) BS02 CA ? GO:0002548 ... P80511 12777802
    38788 1odb:C (2.19) BS03 CA ? GO:0002548 ... P80511 12777802
    38789 1odb:C (2.19) BS04 CU ? GO:0002548 ... P80511 12777802
    38790 1odb:D (2.19) BS01 CU ? GO:0002548 ... P80511 12777802
    38791 1odb:D (2.19) BS02 CU ? GO:0002548 ... P80511 12777802
    38792 1odb:D (2.19) BS03 CA ? GO:0002548 ... P80511 12777802
    38793 1odb:D (2.19) BS04 CA ? GO:0002548 ... P80511 12777802
    38794 1odb:E (2.19) BS01 CU ? GO:0002548 ... P80511 12777802
    38795 1odb:E (2.19) BS02 CA ? GO:0002548 ... P80511 12777802
    38796 1odb:E (2.19) BS03 CA ? GO:0002548 ... P80511 12777802
    38797 1odb:E (2.19) BS04 CU ? GO:0002548 ... P80511 12777802
    38798 1odb:F (2.19) BS01 CU ? GO:0002548 ... P80511 12777802
    38799 1odb:F (2.19) BS02 CU ? GO:0002548 ... P80511 12777802
    38800 1odb:F (2.19) BS03 CA ? GO:0002548 ... P80511 12777802

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).