SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 > >>
    Go to page

    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    39601 1om4:A (1.75) BS01 ZN 1.14.13.39 GO:0004517 ... P29476 N/A
    39602 1om4:A (1.75) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 N/A
    39603 1om4:A (1.75) BS03 H4B 1.14.13.39 GO:0004517 ... P29476 N/A
    39604 1om4:A (1.75) BS04 H4B 1.14.13.39 GO:0004517 ... P29476 N/A
    39605 1om4:A (1.75) BS05 ARG 1.14.13.39 GO:0004517 ... P29476 N/A
    39606 1om4:B (1.75) BS01 ZN 1.14.13.39 GO:0004517 ... P29476 N/A
    39607 1om4:B (1.75) BS02 H4B 1.14.13.39 GO:0004517 ... P29476 N/A
    39608 1om4:B (1.75) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 N/A
    39609 1om4:B (1.75) BS04 H4B 1.14.13.39 GO:0004517 ... P29476 N/A
    39610 1om4:B (1.75) BS05 ARG 1.14.13.39 GO:0004517 ... P29476 N/A
    39611 1om5:A (2.3) BS01 ZN 1.14.13.39 GO:0004517 ... P29476 N/A
    39612 1om5:A (2.3) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 N/A
    39613 1om5:A (2.3) BS03 H4B 1.14.13.39 GO:0004517 ... P29476 N/A
    39614 1om5:A (2.3) BS04 INE 1.14.13.39 GO:0004517 ... P29476 N/A BindingDB: IC50=1800nM
    39615 1om5:A (2.3) BS05 H4B 1.14.13.39 GO:0004517 ... P29476 N/A
    39616 1om5:B (2.3) BS01 ZN 1.14.13.39 GO:0004517 ... P29476 N/A
    39617 1om5:B (2.3) BS02 H4B 1.14.13.39 GO:0004517 ... P29476 N/A
    39618 1om5:B (2.3) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 N/A
    39619 1om5:B (2.3) BS04 H4B 1.14.13.39 GO:0004517 ... P29476 N/A
    39620 1om5:B (2.3) BS05 INE 1.14.13.39 GO:0004517 ... P29476 N/A BindingDB: IC50=1800nM
    39621 1om6:A (2.0) BS01 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    39622 1om6:A (2.0) BS02 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    39623 1om6:A (2.0) BS03 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    39624 1om6:A (2.0) BS04 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    39625 1om6:A (2.0) BS05 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    39626 1om6:A (2.0) BS06 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    39627 1om7:A (2.8) BS01 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    39628 1om7:A (2.8) BS02 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    39629 1om7:A (2.8) BS03 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    39630 1om7:A (2.8) BS04 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    39631 1om7:A (2.8) BS05 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    39632 1om8:A (2.0) BS01 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    39633 1om8:A (2.0) BS02 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    39634 1om8:A (2.0) BS03 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    39635 1om8:A (2.0) BS04 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    39636 1om8:A (2.0) BS05 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    39637 1om8:A (2.0) BS06 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    39638 1om9:A (2.5) BS01 peptide ? GO:0005802 ... Q9UJY5 12858163
    39639 1om9:B (2.5) BS01 peptide ? GO:0005802 ... Q9UJY5 12858163
    39640 1omd:A (1.85) BS01 CA ? GO:0005509 ... P02631 2231727
    39641 1omd:A (1.85) BS02 CA ? GO:0005509 ... P02631 2231727
    39642 1omd:A (1.85) BS03 CA ? GO:0005509 ... P02631 2231727
    39643 1omh:A (1.95) BS01 dna ? N/A Q47673 14625590
    39644 1omj:A (2.38) BS01 ZN 3.4.24.40 GO:0004222 ... O69771 12837794
    39645 1omj:A (2.38) BS02 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    39646 1omj:A (2.38) BS03 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    39647 1omj:A (2.38) BS04 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    39648 1omj:A (2.38) BS05 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    39649 1omj:A (2.38) BS06 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    39650 1omj:A (2.38) BS07 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    39651 1omj:A (2.38) BS08 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    39652 1omj:A (2.38) BS09 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    39653 1omo:A (2.32) BS01 NAD 1.4.1.1 GO:0000286 ... O28608 15313611
    39654 1omo:B (2.32) BS01 NAD 1.4.1.1 GO:0000286 ... O28608 15313611
    39655 1omr:A (1.5) BS01 CA ? GO:0001750 ... P21457 12686556
    39656 1omv:A (1.9) BS01 CA ? GO:0001750 ... P21457 12686556
    39657 1omz:A (2.1) BS01 UD2 2.4.1.223 GO:0016020 ... Q9ES89 12562774
    39658 1omz:B (2.1) BS01 UD2 2.4.1.223 GO:0016020 ... Q9ES89 12562774
    39659 1on1:A (1.75) BS01 MN ? GO:0003677 ... P54512 12847518
    39660 1on1:A (1.75) BS02 MN ? GO:0003677 ... P54512 12847518
    39661 1on1:B (1.75) BS01 MN ? GO:0003677 ... P54512 12847518
    39662 1on1:B (1.75) BS02 MN ? GO:0003677 ... P54512 12847518
    39663 1on2:A (1.61) BS01 MN ? GO:0003677 ... P54512 12847518
    39664 1on2:B (1.61) BS01 MN ? GO:0003677 ... P54512 12847518
    39665 1on3:A (1.9) BS01 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    39666 1on3:A (1.9) BS02 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    39667 1on3:B (1.9) BS01 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    39668 1on3:B (1.9) BS02 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    39669 1on3:C (1.9) BS01 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    39670 1on3:C (1.9) BS02 DXX 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    39671 1on3:C (1.9) BS03 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    39672 1on3:D (1.9) BS01 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    39673 1on3:D (1.9) BS02 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    39674 1on3:E (1.9) BS01 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    39675 1on3:E (1.9) BS02 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    39676 1on3:F (1.9) BS01 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    39677 1on3:F (1.9) BS02 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    39678 1on3:F (1.9) BS03 DXX 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    39679 1on6:A (2.3) BS01 UD1 2.4.1.223 GO:0016020 ... Q9ES89 12562774
    39680 1on6:B (2.3) BS01 UD1 2.4.1.223 GO:0016020 ... Q9ES89 12562774
    39681 1on8:A (2.7) BS01 BDP 2.4.1.223 GO:0016020 ... Q9ES89 12562774
    39682 1on8:A (2.7) BS02 UDP 2.4.1.223 GO:0016020 ... Q9ES89 12562774
    39683 1on8:B (2.7) BS01 BDP 2.4.1.223 GO:0016020 ... Q9ES89 12562774
    39684 1on8:B (2.7) BS02 UDP 2.4.1.223 GO:0016020 ... Q9ES89 12562774
    39685 1on9:A (2.0) BS01 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    39686 1on9:B (2.0) BS01 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    39687 1on9:C (2.0) BS01 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    39688 1on9:D (2.0) BS01 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    39689 1on9:E (2.0) BS01 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    39690 1on9:F (2.0) BS01 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    39691 1ona:A (2.35) BS01 MAN ? GO:0030246 ... P02866 8940035
    39692 1ona:A (2.35) BS02 MAN ? GO:0030246 ... P02866 8940035
    39693 1ona:A (2.35) BS03 MN ? GO:0030246 ... P02866 8940035
    39694 1ona:A (2.35) BS04 CA ? GO:0030246 ... P02866 8940035
    39695 1ona:B (2.35) BS01 MMA ? GO:0030246 ... P02866 8940035
    39696 1ona:B (2.35) BS02 MAN ? GO:0030246 ... P02866 8940035
    39697 1ona:B (2.35) BS03 MAN ? GO:0030246 ... P02866 8940035
    39698 1ona:B (2.35) BS04 MN ? GO:0030246 ... P02866 8940035
    39699 1ona:B (2.35) BS05 CA ? GO:0030246 ... P02866 8940035
    39700 1ona:C (2.35) BS01 MAN ? GO:0030246 ... P02866 8940035
    39701 1ona:C (2.35) BS02 MAN ? GO:0030246 ... P02866 8940035
    39702 1ona:C (2.35) BS03 MN ? GO:0030246 ... P02866 8940035
    39703 1ona:C (2.35) BS04 CA ? GO:0030246 ... P02866 8940035
    39704 1ona:D (2.35) BS01 MAN ? GO:0030246 ... P02866 8940035
    39705 1ona:D (2.35) BS02 MAN ? GO:0030246 ... P02866 8940035
    39706 1ona:D (2.35) BS03 MN ? GO:0030246 ... P02866 8940035
    39707 1ona:D (2.35) BS04 CA ? GO:0030246 ... P02866 8940035
    39708 1onc:A (1.7) BS01 SO4 3.1.27.- GO:0003676 ... P22069 8120892
    39709 1ond:Q (3.4) BS01 rna ? GO:0003735 ... Q9RXJ7 12665853
    39710 1ond:Z (3.4) BS01 rna ? GO:0003735 ... P49228 12665853
    39711 1one:A (1.8) BS01 MG 4.2.1.11 GO:0000015 ... P00924 8605183
    39712 1one:A (1.8) BS02 PEP 4.2.1.11 GO:0000015 ... P00924 8605183
    39713 1one:A (1.8) BS03 2PG 4.2.1.11 GO:0000015 ... P00924 8605183
    39714 1one:B (1.8) BS01 MG 4.2.1.11 GO:0000015 ... P00924 8605183
    39715 1one:B (1.8) BS02 PEP 4.2.1.11 GO:0000015 ... P00924 8605183
    39716 1one:B (1.8) BS03 2PG 4.2.1.11 GO:0000015 ... P00924 8605183
    39717 1onf:A (2.6) BS01 FAD 1.8.1.7 GO:0004362 ... Q94655 12729762
    39718 1ong:A (1.1) BS01 MA4 3.5.2.6 GO:0008800 ... P0AD64 14609325
    39719 1ong:A (1.1) BS02 MA4 3.5.2.6 GO:0008800 ... P0AD64 14609325
    39720 1ong:A (1.1) BS03 WY4 3.5.2.6 GO:0008800 ... P0AD64 14609325
    39721 1onh:A (1.38) BS01 WY4 3.5.2.6 GO:0008800 ... Q59401 14609325
    39722 1onk:A (2.1) BS01 AZI 3.2.2.22 GO:0017148 ... P81446 N/A
    39723 1onk:B (2.1) BS01 AZI 3.2.2.22 N/A P81446 N/A
    39724 1onk:B (2.1) BS02 AZI 3.2.2.22 N/A P81446 N/A
    39725 1onk:B (2.1) BS03 AZI 3.2.2.22 N/A P81446 N/A
    39726 1onk:B (2.1) BS04 AZI 3.2.2.22 N/A P81446 N/A
    39727 1ono:A (2.5) BS01 MN 1.1.1.267 GO:0008299 ... P45568 12621040
    39728 1ono:B (2.5) BS01 MN 1.1.1.267 GO:0008299 ... P45568 12621040
    39729 1onp:A (2.5) BS01 MN 1.1.1.267 GO:0008299 ... P45568 12621040
    39730 1onp:A (2.5) BS02 FOM 1.1.1.267 GO:0008299 ... P45568 12621040 BindingDB: IC50=30nM
    39731 1onp:B (2.5) BS01 MN 1.1.1.267 GO:0008299 ... P45568 12621040
    39732 1onp:B (2.5) BS02 FOM 1.1.1.267 GO:0008299 ... P45568 12621040 BindingDB: IC50=30nM
    39733 1onq:A (2.15) BS01 SLF ? N/A P06126 12833155
    39734 1onq:C (2.15) BS01 SLF ? N/A P06126 12833155
    39735 1ons:A (2.2) BS01 ZN 3.1.2.-
    3.5.1.-
    3.5.1.124
    4.2.1.130
    GO:0005515 ... P31658 14500888
    39736 1onv:A (-1.00) BS01 peptide ? GO:0003677 ... P35269 12732728
    39737 1onw:A (1.65) BS01 ZN 3.4.19.- GO:0005737 ... P39377 12718528
    39738 1onw:A (1.65) BS02 ZN 3.4.19.- GO:0005737 ... P39377 12718528
    39739 1onw:B (1.65) BS01 ZN 3.4.19.- GO:0005737 ... P39377 12718528
    39740 1onw:B (1.65) BS02 ZN 3.4.19.- GO:0005737 ... P39377 12718528
    39741 1onx:A (2.1) BS01 ZN 3.4.19.- GO:0005737 ... P39377 12718528
    39742 1onx:A (2.1) BS02 ZN 3.4.19.- GO:0005737 ... P39377 12718528
    39743 1onx:A (2.1) BS03 ASP 3.4.19.- GO:0005737 ... P39377 12718528
    39744 1onx:B (2.1) BS01 ZN 3.4.19.- GO:0005737 ... P39377 12718528
    39745 1onx:B (2.1) BS02 ZN 3.4.19.- GO:0005737 ... P39377 12718528
    39746 1onx:B (2.1) BS03 ASP 3.4.19.- GO:0005737 ... P39377 12718528
    39747 1ony:A (2.15) BS01 588 3.1.3.48 GO:0004725 ... P18031 12747781 BindingDB: Ki=170nM
    39748 1onz:A (2.4) BS01 968 3.1.3.48 GO:0004725 ... P18031 12747781 BindingDB: Ki=25119nM
    39749 1oo4:A (-1.00) BS01 peptide ? N/A P23727 14503862
    39750 1oo5:A (2.5) BS01 FMN 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    39751 1oo5:A (2.5) BS02 FMN 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    39752 1oo5:B (2.5) BS01 FMN 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    39753 1oo5:B (2.5) BS02 FMN 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    39754 1oo6:A (2.0) BS01 FMN 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    39755 1oo6:A (2.0) BS02 SN2 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    39756 1oo6:A (2.0) BS03 SN2 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    39757 1oo6:A (2.0) BS04 FMN 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    39758 1oo6:B (2.0) BS01 FMN 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    39759 1oo6:B (2.0) BS02 SN2 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    39760 1oo6:B (2.0) BS03 FMN 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    39761 1ooa:A (2.45) BS01 rna ? GO:0003677 ... P25799 12886018
    39762 1ooa:B (2.45) BS01 rna ? GO:0003677 ... P25799 12886018
    39763 1oog:A (1.45) BS01 POL ? GO:0005549 ... O02372 12881720
    39764 1oog:B (1.45) BS01 POL ? GO:0005549 ... O02372 12881720
    39765 1ooh:A (1.25) BS01 1BO ? GO:0005549 ... O02372 12881720
    39766 1ooh:B (1.25) BS01 1BO ? GO:0005549 ... O02372 12881720
    39767 1ooj:A (2.11) BS01 CA ? GO:0000226 ... O16305 14635136
    39768 1ooj:A (2.11) BS02 CA ? GO:0000226 ... O16305 14635136
    39769 1ooj:A (2.11) BS03 CA ? GO:0000226 ... O16305 14635136
    39770 1ooj:A (2.11) BS04 CA ? GO:0000226 ... O16305 14635136
    39771 1ook:B (2.3) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 12855810
    39772 1oon:A (2.49) BS01 FMN 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    39773 1oon:A (2.49) BS02 BEL 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    39774 1oon:A (2.49) BS03 FMN 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    39775 1oon:B (2.49) BS01 FMN 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    39776 1oon:B (2.49) BS02 BEL 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    39777 1oon:B (2.49) BS03 FMN 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    39778 1ooq:A (2.0) BS01 FMN 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    39779 1ooq:A (2.0) BS02 FMN 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    39780 1ooq:A (2.0) BS03 DTC 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    39781 1ooq:B (2.0) BS01 FMN 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    39782 1ooq:B (2.0) BS02 FMN 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    39783 1ooq:B (2.0) BS03 DTC 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    39784 1oow:A (2.0) BS01 CU ? GO:0005507 ... P00289 14670610
    39785 1op0:A (2.0) BS01 FUC 3.4.21.- GO:0004252 ... Q9I8X1 15632114
    39786 1opb:A (1.9) BS01 RET ? GO:0005504 ... P06768 8487303 MOAD: Kd=50nM
    39787 1opb:B (1.9) BS01 RET ? GO:0005504 ... P06768 8487303 MOAD: Kd=50nM
    39788 1opb:C (1.9) BS01 RET ? GO:0005504 ... P06768 8487303 MOAD: Kd=50nM
    39789 1opb:D (1.9) BS01 RET ? GO:0005504 ... P06768 8487303 MOAD: Kd=50nM
    39790 1opi:A (-1.00) BS01 peptide ? GO:0003676 ... P26368 12718882
    39791 1opj:A (1.75) BS01 STI 2.7.10.2 GO:0004672 ... P00520 12654251 BindingDB: IC50=10.8nM
    39792 1opj:B (1.75) BS01 STI 2.7.10.2 GO:0004672 ... P00520 12654251 BindingDB: IC50=10.8nM
    39793 1opk:A (1.8) BS01 P16 2.7.10.2 GO:0004672 ... P00520 12654251
    39794 1opl:A (3.42) BS01 P16 2.7.10.2 GO:0004672 ... P00519 12654251 BindingDB: IC50=2.8nM
    39795 1opl:B (3.42) BS01 P16 2.7.10.2 GO:0004672 ... P00519 12654251 BindingDB: IC50=2.8nM
    39796 1opm:A (2.1) BS01 CU 1.14.17.3
    4.3.2.5
    GO:0003824 ... P14925 10504734
    39797 1opm:A (2.1) BS02 AZI 1.14.17.3
    4.3.2.5
    GO:0003824 ... P14925 10504734
    39798 1opm:A (2.1) BS03 CU 1.14.17.3
    4.3.2.5
    GO:0003824 ... P14925 10504734
    39799 1opm:A (2.1) BS04 IYG 1.14.17.3
    4.3.2.5
    GO:0003824 ... P14925 10504734
    39800 1opm:A (2.1) BS05 IYG 1.14.17.3
    4.3.2.5
    GO:0003824 ... P14925 10504734

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).