SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    40001 1os9:D (1.85) BS05 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    40002 1os9:E (1.85) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    40003 1os9:E (1.85) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    40004 1os9:E (1.85) BS03 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    40005 1os9:E (1.85) BS04 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    40006 1os9:E (1.85) BS05 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    40007 1os9:F (1.85) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    40008 1os9:F (1.85) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    40009 1os9:F (1.85) BS03 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    40010 1os9:F (1.85) BS04 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    40011 1os9:F (1.85) BS05 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    40012 1osa:A (1.68) BS01 CA ? GO:0005509 ... P07463 15299476
    40013 1osa:A (1.68) BS02 CA ? GO:0005509 ... P07463 15299476
    40014 1osa:A (1.68) BS03 CA ? GO:0005509 ... P07463 15299476
    40015 1osa:A (1.68) BS04 CA ? GO:0005509 ... P07463 15299476
    40016 1osb:A (2.65) BS01 dna ? N/A Q47673 14625590
    40017 1osb:C (2.65) BS01 dna ? N/A Q47673 14625590
    40018 1ose:A (2.3) BS01 AC1 3.2.1.1 GO:0003824 ... P00690 8681972
    40019 1ose:A (2.3) BS02 GLC 3.2.1.1 GO:0003824 ... P00690 8681972
    40020 1ose:A (2.3) BS03 AC1 3.2.1.1 GO:0003824 ... P00690 8681972
    40021 1ose:A (2.3) BS04 BGC 3.2.1.1 GO:0003824 ... P00690 8681972
    40022 1ose:A (2.3) BS05 CA 3.2.1.1 GO:0003824 ... P00690 8681972
    40023 1osf:A (1.75) BS01 KOS 3.6.4.10 GO:0005524 ... P07900 12725864 BindingDB: IC50=919nM
    40024 1osg:A (3.0) BS01 peptide ? GO:0005164 ... Q9Y275 12755599
    40025 1osg:B (3.0) BS01 peptide ? GO:0005164 ... Q9Y275 12755599
    40026 1osg:C (3.0) BS01 peptide ? GO:0005164 ... Q9Y275 12755599
    40027 1osg:C (3.0) BS02 peptide ? GO:0005164 ... Q9Y275 12755599
    40028 1osg:D (3.0) BS01 peptide ? GO:0005164 ... Q9Y275 12755599
    40029 1osg:E (3.0) BS01 peptide ? GO:0005164 ... Q9Y275 12755599
    40030 1osg:F (3.0) BS01 peptide ? GO:0005164 ... Q9Y275 12755599
    40031 1osh:A (1.8) BS01 FEX ? GO:0003677 ... Q96RI1 12718892
    40032 1osl:A (-1.00) BS01 dna ? GO:0003677 ... P03023 15256668
    40033 1osl:A (-1.00) BS02 dna ? GO:0003677 ... P03023 15256668
    40034 1osl:B (-1.00) BS01 dna ? GO:0003677 ... P03023 15256668
    40035 1osl:B (-1.00) BS02 dna ? GO:0003677 ... P03023 15256668
    40036 1osn:A (3.2) BS01 ADP 2.7.1.21 GO:0000166 ... P0C0E6 12686543
    40037 1osn:A (3.2) BS02 BVP 2.7.1.21 GO:0000166 ... P0C0E6 12686543
    40038 1osn:B (3.2) BS01 ADP 2.7.1.21 GO:0000166 ... P0C0E6 12686543
    40039 1osn:B (3.2) BS02 BVP 2.7.1.21 GO:0000166 ... P0C0E6 12686543
    40040 1osn:C (3.2) BS01 ADP 2.7.1.21 GO:0000166 ... P0C0E6 12686543
    40041 1osn:C (3.2) BS02 BVP 2.7.1.21 GO:0000166 ... P0C0E6 12686543
    40042 1osn:D (3.2) BS01 ADP 2.7.1.21 GO:0000166 ... P0C0E6 12686543
    40043 1osn:D (3.2) BS02 BVP 2.7.1.21 GO:0000166 ... P0C0E6 12686543
    40044 1oss:A (1.93) BS01 CA 3.4.21.4 GO:0004252 ... P00775 12885239
    40045 1oss:A (1.93) BS02 BEN 3.4.21.4 GO:0004252 ... P00775 12885239 MOAD: Ki=16.4uM
    40046 1osv:A (2.5) BS01 peptide ? GO:0003677 ... Q62735 12718893
    40047 1osv:A (2.5) BS02 CHC ? GO:0003677 ... Q62735 12718893
    40048 1osv:B (2.5) BS01 peptide ? GO:0003677 ... Q62735 12718893
    40049 1osv:B (2.5) BS02 peptide ? GO:0003677 ... Q62735 12718893
    40050 1osv:B (2.5) BS03 CHC ? GO:0003677 ... Q62735 12718893
    40051 1osz:A (2.1) BS01 peptide ? N/A P01901 9707600
    40052 1ot1:A (2.0) BS01 BGC 2.4.1.19 GO:0003824 ... P43379 12706817
    40053 1ot1:A (2.0) BS02 GLC 2.4.1.19 GO:0003824 ... P43379 12706817
    40054 1ot1:A (2.0) BS03 GLC 2.4.1.19 GO:0003824 ... P43379 12706817
    40055 1ot1:A (2.0) BS04 GLC 2.4.1.19 GO:0003824 ... P43379 12706817
    40056 1ot1:A (2.0) BS05 GLC 2.4.1.19 GO:0003824 ... P43379 12706817
    40057 1ot1:A (2.0) BS06 GLC 2.4.1.19 GO:0003824 ... P43379 12706817
    40058 1ot1:A (2.0) BS07 GLC 2.4.1.19 GO:0003824 ... P43379 12706817
    40059 1ot1:A (2.0) BS08 GLC 2.4.1.19 GO:0003824 ... P43379 12706817
    40060 1ot1:A (2.0) BS09 GLC 2.4.1.19 GO:0003824 ... P43379 12706817
    40061 1ot1:A (2.0) BS10 GLC 2.4.1.19 GO:0003824 ... P43379 12706817
    40062 1ot1:A (2.0) BS11 GLC 2.4.1.19 GO:0003824 ... P43379 12706817
    40063 1ot1:A (2.0) BS12 CA 2.4.1.19 GO:0003824 ... P43379 12706817
    40064 1ot1:A (2.0) BS13 CA 2.4.1.19 GO:0003824 ... P43379 12706817
    40065 1ot1:A (2.0) BS14 CA 2.4.1.19 GO:0003824 ... P43379 12706817
    40066 1ot2:A (2.1) BS01 BGC 2.4.1.19 GO:0003824 ... P43379 12706817
    40067 1ot2:A (2.1) BS02 GLC 2.4.1.19 GO:0003824 ... P43379 12706817
    40068 1ot2:A (2.1) BS03 GLC 2.4.1.19 GO:0003824 ... P43379 12706817
    40069 1ot2:A (2.1) BS04 GLC 2.4.1.19 GO:0003824 ... P43379 12706817
    40070 1ot2:A (2.1) BS05 GLC 2.4.1.19 GO:0003824 ... P43379 12706817
    40071 1ot2:A (2.1) BS06 GLC 2.4.1.19 GO:0003824 ... P43379 12706817
    40072 1ot2:A (2.1) BS07 GLC 2.4.1.19 GO:0003824 ... P43379 12706817
    40073 1ot2:A (2.1) BS08 GLC 2.4.1.19 GO:0003824 ... P43379 12706817
    40074 1ot2:A (2.1) BS09 GLC 2.4.1.19 GO:0003824 ... P43379 12706817
    40075 1ot2:A (2.1) BS10 GLC 2.4.1.19 GO:0003824 ... P43379 12706817
    40076 1ot2:A (2.1) BS11 GLC 2.4.1.19 GO:0003824 ... P43379 12706817
    40077 1ot2:A (2.1) BS12 CA 2.4.1.19 GO:0003824 ... P43379 12706817
    40078 1ot2:A (2.1) BS13 GLC 2.4.1.19 GO:0003824 ... P43379 12706817
    40079 1ot2:A (2.1) BS14 CA 2.4.1.19 GO:0003824 ... P43379 12706817
    40080 1ot2:A (2.1) BS15 CA 2.4.1.19 GO:0003824 ... P43379 12706817
    40081 1ot3:A (2.5) BS01 THM 2.7.1.145 GO:0004136 ... Q9XZT6 12741827
    40082 1ot3:B (2.5) BS01 THM 2.7.1.145 GO:0004136 ... Q9XZT6 12741827
    40083 1ot3:C (2.5) BS01 THM 2.7.1.145 GO:0004136 ... Q9XZT6 12741827
    40084 1ot3:D (2.5) BS01 THM 2.7.1.145 GO:0004136 ... Q9XZT6 12741827
    40085 1ot3:E (2.5) BS01 THM 2.7.1.145 GO:0004136 ... Q9XZT6 12741827
    40086 1ot3:F (2.5) BS01 THM 2.7.1.145 GO:0004136 ... Q9XZT6 12741827
    40087 1ot3:G (2.5) BS01 THM 2.7.1.145 GO:0004136 ... Q9XZT6 12741827
    40088 1ot3:H (2.5) BS01 THM 2.7.1.145 GO:0004136 ... Q9XZT6 12741827
    40089 1ot5:A (2.4) BS01 peptide 3.4.21.61 GO:0004252 ... P13134 12779325
    40090 1ot5:A (2.4) BS02 CA 3.4.21.61 GO:0004252 ... P13134 12779325
    40091 1ot5:A (2.4) BS03 CA 3.4.21.61 GO:0004252 ... P13134 12779325
    40092 1ot5:A (2.4) BS04 CA 3.4.21.61 GO:0004252 ... P13134 12779325
    40093 1ot5:B (2.4) BS01 peptide 3.4.21.61 GO:0004252 ... P13134 12779325
    40094 1ot5:B (2.4) BS02 CA 3.4.21.61 GO:0004252 ... P13134 12779325
    40095 1ot5:B (2.4) BS03 CA 3.4.21.61 GO:0004252 ... P13134 12779325
    40096 1ot5:B (2.4) BS04 CA 3.4.21.61 GO:0004252 ... P13134 12779325
    40097 1ot7:A (2.9) BS01 peptide ? GO:0003677 ... Q62735 12718893
    40098 1ot7:A (2.9) BS02 CHC ? GO:0003677 ... Q62735 12718893
    40099 1ot7:B (2.9) BS01 peptide ? GO:0003677 ... Q62735 12718893
    40100 1ot7:B (2.9) BS02 peptide ? GO:0003677 ... Q62735 12718893
    40101 1ot7:B (2.9) BS03 IU5 ? GO:0003677 ... Q62735 12718893
    40102 1otc:A (2.8) BS01 dna ? GO:0000723 ... P29549 9875850
    40103 1otc:B (2.8) BS01 dna ? GO:0000781 ... P16458 9875850
    40104 1oth:A (1.85) BS01 PAO 2.1.3.3 GO:0000050 ... P00480 9852088 BindingDB: Ki=100nM
    40105 1otn:A (1.97) BS01 CA ? N/A P0DQD2 15020228
    40106 1oto:A (1.96) BS01 CA ? N/A P0DQD2 15020228
    40107 1ots:A (2.51) BS01 CL ? GO:0005247 ... P37019 12649487
    40108 1ots:A (2.51) BS02 CL ? GO:0005247 ... P37019 12649487
    40109 1ots:B (2.51) BS01 CL ? GO:0005247 ... P37019 12649487
    40110 1ots:B (2.51) BS02 CL ? GO:0005247 ... P37019 12649487
    40111 1ott:A (3.0) BS01 CL ? GO:0005247 ... P37019 12649487
    40112 1ott:A (3.0) BS02 CL ? GO:0005247 ... P37019 12649487
    40113 1ott:A (3.0) BS03 CL ? GO:0005247 ... P37019 12649487
    40114 1ott:B (3.0) BS01 CL ? GO:0005247 ... P37019 12649487
    40115 1ott:B (3.0) BS02 CL ? GO:0005247 ... P37019 12649487
    40116 1ott:B (3.0) BS03 CL ? GO:0005247 ... P37019 12649487
    40117 1otu:A (3.3) BS01 CL ? GO:0005247 ... P37019 12649487
    40118 1otu:A (3.3) BS02 CL ? GO:0005247 ... P37019 12649487
    40119 1otu:A (3.3) BS03 CL ? GO:0005247 ... P37019 12649487
    40120 1otu:B (3.3) BS01 CL ? GO:0005247 ... P37019 12649487
    40121 1otu:B (3.3) BS02 CL ? GO:0005247 ... P37019 12649487
    40122 1otw:A (2.3) BS01 PQQ 1.3.3.11 GO:0018189 ... P27505 15148379
    40123 1otw:B (2.3) BS01 PQQ 1.3.3.11 GO:0018189 ... P27505 15148379
    40124 1oty:A (2.5) BS01 6MP 2.4.2.1 GO:0003824 ... P0ABP8 14700625
    40125 1oty:B (2.5) BS01 6MP 2.4.2.1 GO:0003824 ... P0ABP8 14700625
    40126 1oty:C (2.5) BS01 6MP 2.4.2.1 GO:0003824 ... P0ABP8 14700625
    40127 1ou4:A (2.5) BS01 6MP 2.4.2.1 GO:0003824 ... P0ABP8 14700625
    40128 1ou4:B (2.5) BS01 6MP 2.4.2.1 GO:0003824 ... P0ABP8 14700625
    40129 1ou4:C (2.5) BS01 6MP 2.4.2.1 GO:0003824 ... P0ABP8 14700625
    40130 1ou6:A (2.07) BS01 168 2.3.1.9 GO:0003985 ... P07097 N/A
    40131 1ou6:B (2.07) BS01 168 2.3.1.9 GO:0003985 ... P07097 N/A
    40132 1ou8:A (1.6) BS01 peptide ? N/A P45206 14536076
    40133 1ou8:A (1.6) BS02 MG ? N/A P45206 14536076
    40134 1ou8:B (1.6) BS01 peptide ? N/A P45206 14536076
    40135 1ou8:B (1.6) BS02 MG ? N/A P45206 14536076
    40136 1ou9:A (1.8) BS01 CA ? N/A P45206 14536076
    40137 1ou9:A (1.8) BS02 CA ? N/A P45206 14536076
    40138 1ou9:B (1.8) BS01 CA ? N/A P45206 14536076
    40139 1ouk:A (2.5) BS01 084 2.7.11.24 GO:0000165 ... Q16539 12897767 MOAD: ic50=0.13nM
    BindingDB: IC50=110nM
    40140 1oum:A (2.4) BS01 TAL 2.4.2.1 GO:0003824 ... P0ABP8 14700625
    40141 1oum:B (2.4) BS01 TAL 2.4.2.1 GO:0003824 ... P0ABP8 14700625
    40142 1oum:C (2.4) BS01 TAL 2.4.2.1 GO:0003824 ... P0ABP8 14700625
    40143 1ouo:A (2.3) BS01 MG 3.1.-.- GO:0004518 ... Q7MHK3 12881435
    40144 1oup:A (2.3) BS01 dna 3.1.-.- GO:0004518 ... Q7MHK3 12881435
    40145 1oup:A (2.3) BS02 dna 3.1.-.- GO:0004518 ... Q7MHK3 12881435
    40146 1oup:A (2.3) BS03 dna 3.1.-.- GO:0004518 ... Q7MHK3 12881435
    40147 1oup:A (2.3) BS04 CA 3.1.-.- GO:0004518 ... Q7MHK3 12881435
    40148 1oup:B (2.3) BS01 dna 3.1.-.- GO:0004518 ... Q7MHK3 12881435
    40149 1oup:B (2.3) BS02 dna 3.1.-.- GO:0004518 ... Q7MHK3 12881435
    40150 1oup:B (2.3) BS03 CA 3.1.-.- GO:0004518 ... Q7MHK3 12881435
    40151 1ouq:A (3.2) BS01 dna ? GO:0003677 ... P06956 12954782
    40152 1ouq:A (3.2) BS02 dna ? GO:0003677 ... P06956 12954782
    40153 1ouq:B (3.2) BS01 dna ? GO:0003677 ... P06956 12954782
    40154 1ouq:B (3.2) BS02 dna ? GO:0003677 ... P06956 12954782
    40155 1ouq:B (3.2) BS03 dna ? GO:0003677 ... P06956 12954782
    40156 1ouq:E (3.2) BS01 dna ? GO:0003677 ... P06956 12954782
    40157 1ouq:E (3.2) BS02 dna ? GO:0003677 ... P06956 12954782
    40158 1ouq:F (3.2) BS01 dna ? GO:0003677 ... P06956 12954782
    40159 1ouq:F (3.2) BS02 dna ? GO:0003677 ... P06956 12954782
    40160 1ouq:F (3.2) BS03 dna ? GO:0003677 ... P06956 12954782
    40161 1our:A (1.42) BS01 MAN ? GO:0030246 ... Q9HYN5 12909014
    40162 1our:A (1.42) BS02 CA ? GO:0030246 ... Q9HYN5 12909014
    40163 1our:A (1.42) BS03 CA ? GO:0030246 ... Q9HYN5 12909014
    40164 1out:A (2.3) BS01 HEM ? GO:0004601 ... P02019 8683580
    40165 1out:B (2.3) BS01 HEM ? GO:0004601 ... P02142 8683580
    40166 1ouu:A (2.5) BS01 HEM ? GO:0004601 ... P02019 8683580
    40167 1ouu:B (2.5) BS01 HEM ? GO:0004601 ... P02142 8683580
    40168 1ouu:C (2.5) BS01 HEM ? GO:0004601 ... P02019 8683580
    40169 1ouu:D (2.5) BS01 HEM ? GO:0004601 ... P02142 8683580
    40170 1oux:A (2.0) BS01 CA ? GO:0030246 ... Q9HYN5 12909014
    40171 1oux:A (2.0) BS02 CA ? GO:0030246 ... Q9HYN5 12909014
    40172 1oux:B (2.0) BS01 CA ? GO:0030246 ... Q9HYN5 12909014
    40173 1oux:B (2.0) BS02 CA ? GO:0030246 ... Q9HYN5 12909014
    40174 1oux:C (2.0) BS01 CA ? GO:0030246 ... Q9HYN5 12909014
    40175 1oux:C (2.0) BS02 CA ? GO:0030246 ... Q9HYN5 12909014
    40176 1oux:D (2.0) BS01 CA ? GO:0030246 ... Q9HYN5 12909014
    40177 1oux:D (2.0) BS02 CA ? GO:0030246 ... Q9HYN5 12909014
    40178 1ouy:A (2.5) BS01 094 2.7.11.24 GO:0000165 ... Q16539 12897767 MOAD: ic50=4.3nM
    40179 1ouz:A (2.41) BS01 dna ? GO:0000976 ... P0A6X7 12842466
    40180 1ouz:A (2.41) BS02 dna ? GO:0000976 ... P0A6X7 12842466
    40181 1ouz:A (2.41) BS03 dna ? GO:0000976 ... P0A6X7 12842466
    40182 1ouz:B (2.41) BS01 dna ? GO:0003677 ... P0A6Y1 12842466
    40183 1ouz:B (2.41) BS02 dna ? GO:0003677 ... P0A6Y1 12842466
    40184 1ov3:A (1.8) BS01 peptide ? N/A P14598 12732142
    40185 1ov3:A (1.8) BS02 peptide ? N/A P14598 12732142
    40186 1ov3:B (1.8) BS01 peptide ? N/A P14598 12732142
    40187 1ov3:B (1.8) BS02 peptide ? N/A P14598 12732142
    40188 1ov4:A (2.7) BS01 SO4 2.8.2.14
    2.8.2.2
    GO:0004027 ... Q06520 14573603
    40189 1ov4:A (2.7) BS02 AOX 2.8.2.14
    2.8.2.2
    GO:0004027 ... Q06520 14573603
    40190 1ov5:A (2.1) BS01 2LP 3.2.1.17 GO:0003796 ... P00720 15046985
    40191 1ov6:A (2.4) BS01 DBM 2.4.2.1 GO:0003824 ... P0ABP8 14700625
    40192 1ov6:B (2.4) BS01 DBM 2.4.2.1 GO:0003824 ... P0ABP8 14700625
    40193 1ov6:C (2.4) BS01 DBM 2.4.2.1 GO:0003824 ... P0ABP8 14700625
    40194 1ov7:A (2.0) BS01 LYL 3.2.1.17 GO:0003796 ... P00720 15046985
    40195 1ov8:A (1.9) BS01 CU ? GO:0005507 ... P27197 12925783
    40196 1ov8:B (1.9) BS01 CU ? GO:0005507 ... P27197 12925783
    40197 1ov8:C (1.9) BS01 CU ? GO:0005507 ... P27197 12925783
    40198 1ov8:D (1.9) BS01 CU ? GO:0005507 ... P27197 12925783
    40199 1ova:A (1.95) BS01 CA ? GO:0004867 ... P01012 1942038
    40200 1ovb:A (2.3) BS01 FE ? GO:0005576 ... P56410 15299534

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).