SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    403401 5t2c:AN (3.6) BS02 rna ? GO:0002181 ... P62277 27752045
    403402 5t2c:AO (3.6) BS01 rna ? GO:0000028 ... P62263 27752045
    403403 5t2c:AP (3.6) BS01 rna ? GO:0002181 ... P62244 27752045
    403404 5t2c:AQ (3.6) BS01 rna ? GO:0002181 ... P62847 27752045
    403405 5t2c:AR (3.6) BS01 rna ? GO:0002181 ... P62851 27752045
    403406 5t2c:AT (3.6) BS01 rna ? GO:0003735 ... P62861 27752045
    403407 5t2c:AU (3.6) BS01 rna ? GO:0000028 ... P39019 27752045
    403408 5t2c:AV (3.6) BS01 rna ? GO:0000028 ... P42677 27752045
    403409 5t2c:Ao (3.6) BS01 rna ? GO:0000028 ... P08865 27752045
    403410 5t2c:Ap (3.6) BS01 rna ? GO:0002181 ... P61247 27752045
    403411 5t2c:Ap (3.6) BS02 rna ? GO:0002181 ... P61247 27752045
    403412 5t2c:Aq (3.6) BS01 rna 4.2.99.18 GO:0000977 ... P23396 27752045
    403413 5t2c:Ar (3.6) BS01 rna ? GO:0002181 ... P62701 27752045
    403414 5t2c:As (3.6) BS01 rna ? GO:0000028 ... P46782 27752045
    403415 5t2c:As (3.6) BS02 rna ? GO:0000028 ... P46782 27752045
    403416 5t2c:At (3.6) BS01 rna ? GO:0001843 ... P62081 27752045
    403417 5t2c:Au (3.6) BS01 rna ? GO:0000462 ... P62241 27752045
    403418 5t2c:Au (3.6) BS02 rna ? GO:0000462 ... P62241 27752045
    403419 5t2c:Av (3.6) BS01 rna ? GO:0002181 ... P46783 27752045
    403420 5t2c:Aw (3.6) BS01 rna ? GO:0002181 ... P62280 27752045
    403421 5t2c:Ax (3.6) BS01 rna ? GO:0000028 ... P62841 27752045
    403422 5t2c:Ay (3.6) BS01 rna ? GO:0000462 ... P62249 27752045
    403423 5t2c:Az (3.6) BS01 rna ? GO:0002181 ... P08708 27752045
    403424 5t2c:D (3.6) BS01 rna ? GO:0002181 ... P62917 27752045
    403425 5t2c:D (3.6) BS02 rna ? GO:0002181 ... P62917 27752045
    403426 5t2c:E (3.6) BS01 rna ? GO:0002181 ... P39023 27752045
    403427 5t2c:F (3.6) BS01 rna ? GO:0002181 ... P36578 27752045
    403428 5t2c:F (3.6) BS02 rna ? GO:0002181 ... P36578 27752045
    403429 5t2c:G (3.6) BS01 rna ? GO:0000027 ... P46777 27752045
    403430 5t2c:G (3.6) BS02 rna ? GO:0000027 ... P46777 27752045
    403431 5t2c:H (3.6) BS01 rna ? GO:0002181 ... Q02878 27752045
    403432 5t2c:I (3.6) BS01 rna ? GO:0002181 ... P40429 27752045
    403433 5t2c:J (3.6) BS01 rna ? GO:0003735 ... P18621 27752045
    403434 5t2c:J (3.6) BS02 rna ? GO:0003735 ... P18621 27752045
    403435 5t2c:K (3.6) BS01 rna ? GO:0002181 ... Q07020 27752045
    403436 5t2c:L (3.6) BS01 rna ? GO:0002181 ... P84098 27752045
    403437 5t2c:L (3.6) BS02 rna ? GO:0002181 ... P84098 27752045
    403438 5t2c:M (3.6) BS01 rna ? GO:0002181 ... Q02543 27752045
    403439 5t2c:M (3.6) BS02 rna ? GO:0002181 ... Q02543 27752045
    403440 5t2c:N (3.6) BS01 rna ? GO:0002181 ... P46778 27752045
    403441 5t2c:N (3.6) BS02 rna ? GO:0002181 ... P46778 27752045
    403442 5t2c:O (3.6) BS01 rna ? GO:0002181 ... P35268 27752045
    403443 5t2c:P (3.6) BS01 rna ? GO:0000122 ... P62829 27752045
    403444 5t2c:Q (3.6) BS01 rna ? GO:0000027 ... P83731 27752045
    403445 5t2c:R (3.6) BS01 rna ? GO:0002181 ... P62750 27752045
    403446 5t2c:R (3.6) BS02 rna ? GO:0002181 ... P62750 27752045
    403447 5t2c:S (3.6) BS01 rna ? GO:0002181 ... P61254 27752045
    403448 5t2c:S (3.6) BS02 rna ? GO:0002181 ... P61254 27752045
    403449 5t2c:T (3.6) BS01 rna ? GO:0002181 ... P61353 27752045
    403450 5t2c:U (3.6) BS01 rna ? GO:0002181 ... P46776 27752045
    403451 5t2c:V (3.6) BS01 rna ? GO:0002181 ... P47914 27752045
    403452 5t2c:W (3.6) BS01 rna ? GO:0002181 ... P62888 27752045
    403453 5t2c:W (3.6) BS02 rna ? GO:0002181 ... P62888 27752045
    403454 5t2c:X (3.6) BS01 rna ? GO:0002181 ... P62899 27752045
    403455 5t2c:Y (3.6) BS01 rna ? GO:0002181 ... P62910 27752045
    403456 5t2c:Z (3.6) BS01 rna ? GO:0000049 ... P18077 27752045
    403457 5t2c:a (3.6) BS01 rna ? GO:0002181 ... P49207 27752045
    403458 5t2c:b (3.6) BS01 rna ? GO:0000463 ... P42766 27752045
    403459 5t2c:b (3.6) BS02 rna ? GO:0000463 ... P42766 27752045
    403460 5t2c:c (3.6) BS01 rna ? GO:0002181 ... Q9Y3U8 27752045
    403461 5t2c:d (3.6) BS01 rna ? GO:0002181 ... P61927 27752045
    403462 5t2c:d (3.6) BS02 rna ? GO:0002181 ... P61927 27752045
    403463 5t2c:e (3.6) BS01 rna ? GO:0001501 ... P63173 27752045
    403464 5t2c:f (3.6) BS01 rna ? GO:0002181 ... P62891 27752045
    403465 5t2c:f (3.6) BS02 rna ? GO:0002181 ... P62891 27752045
    403466 5t2c:g (3.6) BS01 rna ? GO:0002181 ... P62987 27752045
    403467 5t2c:i (3.6) BS01 rna ? GO:0002181 ... P83881 27752045
    403468 5t2c:i (3.6) BS02 rna ? GO:0002181 ... P83881 27752045
    403469 5t2c:j (3.6) BS01 rna ? GO:0002181 ... P61513 27752045
    403470 5t2c:k (3.6) BS01 rna ? GO:0002181 ... P46779 27752045
    403471 5t2c:l (3.6) BS01 rna ? GO:0002181 ... P62906 27752045
    403472 5t2c:l (3.6) BS02 rna ? GO:0002181 ... P62906 27752045
    403473 5t2c:m (3.6) BS01 rna ? GO:0000463 ... P18124 27752045
    403474 5t2c:m (3.6) BS02 rna ? GO:0000463 ... P18124 27752045
    403475 5t2c:n (3.6) BS01 rna ? GO:0000470 ... P62424 27752045
    403476 5t2c:n (3.6) BS02 rna ? GO:0000470 ... P62424 27752045
    403477 5t2c:o (3.6) BS01 rna ? GO:0002181 ... P32969 27752045
    403478 5t2c:p (3.6) BS01 rna ? GO:0000027 ... Q96L21 27752045
    403479 5t2c:p (3.6) BS02 rna ? GO:0000027 ... Q96L21 27752045
    403480 5t2c:q (3.6) BS01 rna ? GO:0000027 ... P62913 27752045
    403481 5t2c:q (3.6) BS02 rna ? GO:0000027 ... P62913 27752045
    403482 5t2c:r (3.6) BS01 rna ? GO:0001824 ... P26373 27752045
    403483 5t2c:r (3.6) BS02 rna ? GO:0001824 ... P26373 27752045
    403484 5t2c:s (3.6) BS01 rna ? GO:0002181 ... P50914 27752045
    403485 5t2c:t (3.6) BS01 rna ? GO:0002181 ... P61313 27752045
    403486 5t2c:t (3.6) BS02 rna ? GO:0002181 ... P61313 27752045
    403487 5t2d:A (2.9) BS01 74L 2.7.1.137
    2.7.1.153
    GO:0016301 ... O35904 28017532
    403488 5t2g:A (2.55) BS01 74K 2.7.1.137
    2.7.1.153
    GO:0016301 ... O35904 28017532
    403489 5t2h:A (2.517) BS01 dna N/A GO:0004519 ... N/A 28637173
    403490 5t2h:A (2.517) BS02 dna N/A GO:0004519 ... N/A 28637173
    403491 5t2h:A (2.517) BS03 CA N/A GO:0004519 ... N/A 28637173
    403492 5t2h:A (2.517) BS04 CA N/A GO:0004519 ... N/A 28637173
    403493 5t2i:A (2.3) BS01 74J 2.7.1.137
    2.7.1.153
    GO:0016301 ... O35904 28017532 MOAD: ic50=2nM
    403494 5t2k:A (1.8) BS01 76R 1.3.98.5 GO:0004601 ... A0A0K2H9D8 27936663
    403495 5t2k:B (1.8) BS01 76R 1.3.98.5 GO:0004601 ... A0A0K2H9D8 27936663
    403496 5t2k:C (1.8) BS01 76R 1.3.98.5 GO:0004601 ... A0A0K2H9D8 27936663
    403497 5t2k:D (1.8) BS01 76R 1.3.98.5 GO:0004601 ... A0A0K2H9D8 27936663
    403498 5t2k:E (1.8) BS01 76R 1.3.98.5 GO:0004601 ... A0A0K2H9D8 27936663
    403499 5t2l:A (2.55) BS01 74H 2.7.1.137
    2.7.1.153
    GO:0016301 ... O35904 28017532
    403500 5t2m:A (2.8) BS01 74N 2.7.1.137
    2.7.1.153
    GO:0016301 ... O35904 28017532
    403501 5t2n:A (2.079) BS01 dna N/A GO:0004519 ... N/A 28637173
    403502 5t2n:A (2.079) BS02 dna N/A GO:0004519 ... N/A 28637173
    403503 5t2n:A (2.079) BS03 CA N/A GO:0004519 ... N/A 28637173
    403504 5t2n:A (2.079) BS04 CA N/A GO:0004519 ... N/A 28637173
    403505 5t2n:A (2.079) BS05 CA N/A GO:0004519 ... N/A 28637173
    403506 5t2o:A (2.801) BS01 dna N/A GO:0004519 ... N/A 28637173
    403507 5t2o:A (2.801) BS02 dna N/A GO:0004519 ... N/A 28637173
    403508 5t2o:A (2.801) BS03 CA N/A GO:0004519 ... N/A 28637173
    403509 5t2o:A (2.801) BS04 CA N/A GO:0004519 ... N/A 28637173
    403510 5t2p:A (1.693) BS01 K89 ? GO:0005198 ... L7R9I1 28205569 MOAD: ic50=1.9uM
    403511 5t2p:A (1.693) BS02 K89 ? GO:0005198 ... L7R9I1 28205569 MOAD: ic50=1.9uM
    403512 5t2p:B (1.693) BS01 K89 ? GO:0005198 ... L7R9I1 28205569 MOAD: ic50=1.9uM
    403513 5t2p:C (1.693) BS01 K89 ? GO:0005198 ... L7R9I1 28205569 MOAD: ic50=1.9uM
    403514 5t2p:C (1.693) BS02 K89 ? GO:0005198 ... L7R9I1 28205569 MOAD: ic50=1.9uM
    403515 5t2p:D (1.693) BS01 K89 ? GO:0005198 ... L7R9I1 28205569 MOAD: ic50=1.9uM
    403516 5t2p:E (1.693) BS01 K89 ? GO:0005198 ... L7R9I1 28205569 MOAD: ic50=1.9uM
    403517 5t2p:E (1.693) BS02 K89 ? GO:0005198 ... L7R9I1 28205569 MOAD: ic50=1.9uM
    403518 5t2p:F (1.693) BS01 K89 ? GO:0005198 ... L7R9I1 28205569 MOAD: ic50=1.9uM
    403519 5t2s:A (2.4) BS01 peptide 2.7.12.1 N/A P22216
    P32325
    27681475
    403520 5t2s:C (2.4) BS01 peptide 2.7.12.1 N/A P22216
    P32325
    27681475
    403521 5t2t:A (1.967) BS01 MN 2.7.7.48
    3.1.-.-
    N/A P14240 29765612
    403522 5t2t:A (1.967) BS02 0N8 2.7.7.48
    3.1.-.-
    N/A P14240 29765612
    403523 5t2u:A (2.2) BS01 NAP ? GO:0000166 ... A0R723 28126742
    403524 5t2u:B (2.2) BS01 NAP ? GO:0000166 ... A0R723 28126742
    403525 5t2u:C (2.2) BS01 NAP ? GO:0000166 ... A0R723 28126742
    403526 5t2u:D (2.2) BS01 NAP ? GO:0000166 ... A0R723 28126742
    403527 5t2w:A (2.2) BS01 dna 3.2.2.29 GO:0000700 ... Q13569 27805810
    403528 5t2w:A (2.2) BS02 dna 3.2.2.29 GO:0000700 ... Q13569 27805810
    403529 5t2y:A (1.94) BS01 753 2.3.1.203 GO:0006486 ... Q0P9D1 28182413 MOAD: ic50=2.2uM
    BindingDB: IC50=2200nM
    403530 5t2y:B (1.94) BS01 753 2.3.1.203 GO:0006486 ... Q0P9D1 28182413 MOAD: ic50=2.2uM
    BindingDB: IC50=2200nM
    403531 5t2z:A (1.5) BS01 017 ? GO:0004190 ... I7BFC3 27992544
    403532 5t2z:B (1.5) BS01 017 ? GO:0004190 ... I7BFC3 27992544
    403533 5t30:A (1.77) BS01 MN 1.15.1.1 GO:0000302 ... P04179 28461152
    403534 5t30:A (1.77) BS02 AZI 1.15.1.1 GO:0000302 ... P04179 28461152
    403535 5t30:B (1.77) BS01 MN 1.15.1.1 GO:0000302 ... P04179 28461152
    403536 5t31:A (2.85) BS01 6VL 2.7.11.1
    2.7.11.26
    GO:0001837 ... P49841 29515000 BindingDB: IC50=515nM
    403537 5t31:B (2.85) BS01 6VL 2.7.11.1
    2.7.11.26
    GO:0001837 ... P49841 29515000 BindingDB: IC50=515nM
    403538 5t33:H (3.2092) BS01 MAN N/A N/A N/A 27581986
    403539 5t35:A (2.7) BS01 759 ? N/A O60885 28288108
    403540 5t35:D (2.7) BS01 759 ? N/A P40337 28288108
    403541 5t35:E (2.7) BS01 759 ? N/A O60885 28288108
    403542 5t35:H (2.7) BS01 759 ? N/A P40337 28288108
    403543 5t36:A (1.4) BS01 755 1.11.1.-
    2.5.1.18
    5.3.99.3
    GO:0001516 ... O14684 28190634 MOAD: ic50=0.043uM
    BindingDB: IC50=8910nM
    403544 5t36:A (1.4) BS02 GSH 1.11.1.-
    2.5.1.18
    5.3.99.3
    GO:0001516 ... O14684 28190634
    403545 5t37:A (1.761) BS01 758 1.11.1.-
    2.5.1.18
    5.3.99.3
    GO:0001516 ... O14684 28190634 MOAD: ic50=0.241uM
    BindingDB: IC50=0.744000nM
    403546 5t37:A (1.761) BS02 GSH 1.11.1.-
    2.5.1.18
    5.3.99.3
    GO:0001516 ... O14684 28190634
    403547 5t38:A (1.1502) BS01 SAH ? N/A A0A1C5AE13 30525509
    403548 5t39:A (1.1004) BS01 SAH ? N/A A0A1C5AE13 30525509
    403549 5t3d:A (2.8) BS01 75C 6.2.1.72
    6.3.2.14
    GO:0003824 ... P11454 26762461
    403550 5t3f:A (1.45) BS01 SEY 3.2.1.17 GO:0003796 ... P00698 27841370
    403551 5t3f:A (1.45) BS02 SEY 3.2.1.17 GO:0003796 ... P00698 27841370
    403552 5t3f:A (1.45) BS03 SEY 3.2.1.17 GO:0003796 ... P00698 27841370
    403553 5t3f:A (1.45) BS04 SEY 3.2.1.17 GO:0003796 ... P00698 27841370
    403554 5t3f:A (1.45) BS05 SEY 3.2.1.17 GO:0003796 ... P00698 27841370
    403555 5t3f:A (1.45) BS06 SEY 3.2.1.17 GO:0003796 ... P00698 27841370
    403556 5t3f:A (1.45) BS07 SEY 3.2.1.17 GO:0003796 ... P00698 27841370
    403557 5t3f:A (1.45) BS08 SEY 3.2.1.17 GO:0003796 ... P00698 27841370
    403558 5t3f:A (1.45) BS09 SEY 3.2.1.17 GO:0003796 ... P00698 27841370
    403559 5t3g:A (1.55) BS01 SEY ? GO:0031410 ... P02883 27841370
    403560 5t3g:A (1.55) BS02 SEY ? GO:0031410 ... P02883 27841370
    403561 5t3g:A (1.55) BS03 SEY ? GO:0031410 ... P02883 27841370
    403562 5t3g:A (1.55) BS04 SEY ? GO:0031410 ... P02883 27841370
    403563 5t3g:A (1.55) BS05 SEY ? GO:0031410 ... P02883 27841370
    403564 5t3g:A (1.55) BS06 SEY ? GO:0031410 ... P02883 27841370
    403565 5t3g:A (1.55) BS07 SEY ? GO:0031410 ... P02883 27841370
    403566 5t3g:A (1.55) BS08 SEY ? GO:0031410 ... P02883 27841370
    403567 5t3g:A (1.55) BS09 SEY ? GO:0031410 ... P02883 27841370
    403568 5t3h:A (1.55) BS01 CA 3.4.21.4 GO:0004175 ... P00760 27841370
    403569 5t3h:A (1.55) BS02 SEY 3.4.21.4 GO:0004175 ... P00760 27841370
    403570 5t3h:A (1.55) BS03 SEY 3.4.21.4 GO:0004175 ... P00760 27841370
    403571 5t3h:A (1.55) BS04 SEY 3.4.21.4 GO:0004175 ... P00760 27841370
    403572 5t3h:A (1.55) BS05 SEY 3.4.21.4 GO:0004175 ... P00760 27841370
    403573 5t3h:A (1.55) BS06 SEY 3.4.21.4 GO:0004175 ... P00760 27841370
    403574 5t3h:A (1.55) BS07 SEY 3.4.21.4 GO:0004175 ... P00760 27841370
    403575 5t3h:A (1.55) BS08 SEY 3.4.21.4 GO:0004175 ... P00760 27841370
    403576 5t3h:A (1.55) BS09 SEY 3.4.21.4 GO:0004175 ... P00760 27841370
    403577 5t3i:A (1.6) BS01 SEY ? GO:0006091 ... P42212 27841370
    403578 5t3i:A (1.6) BS02 SEY ? GO:0006091 ... P42212 27841370
    403579 5t3i:A (1.6) BS03 SEY ? GO:0006091 ... P42212 27841370
    403580 5t3i:A (1.6) BS04 SEY ? GO:0006091 ... P42212 27841370
    403581 5t3i:A (1.6) BS05 SEY ? GO:0006091 ... P42212 27841370
    403582 5t3i:A (1.6) BS06 SEY ? GO:0006091 ... P42212 27841370
    403583 5t3i:A (1.6) BS07 SEY ? GO:0006091 ... P42212 27841370
    403584 5t3i:A (1.6) BS08 SEY ? GO:0006091 ... P42212 27841370
    403585 5t3i:A (1.6) BS09 SEY ? GO:0006091 ... P42212 27841370
    403586 5t3i:A (1.6) BS10 SEY ? GO:0006091 ... P42212 27841370
    403587 5t3j:A (2.55) BS01 SEY 3.1.3.15 GO:0004401 ... G7J7Q5 27841370
    403588 5t3n:A (2.4) BS01 75G 2.7.11.11 GO:0005952 ... Q7KQK0 27738107 MOAD: Kd=9.1nM
    403589 5t3n:B (2.4) BS01 75G 2.7.11.11 GO:0005952 ... Q7KQK0 27738107 MOAD: Kd=9.1nM
    403590 5t3o:A (2.2) BS01 ADP 2.7.6.1 GO:0000287 ... Q5SHU3 28580926
    403591 5t3o:A (2.2) BS02 SO4 2.7.6.1 GO:0000287 ... Q5SHU3 28580926
    403592 5t3o:B (2.2) BS01 ADP 2.7.6.1 GO:0000287 ... Q5SHU3 28580926
    403593 5t3o:B (2.2) BS02 SO4 2.7.6.1 GO:0000287 ... Q5SHU3 28580926
    403594 5t3o:B (2.2) BS03 SO4 2.7.6.1 GO:0000287 ... Q5SHU3 28580926
    403595 5t3o:C (2.2) BS01 ADP 2.7.6.1 GO:0000287 ... Q5SHU3 28580926
    403596 5t3o:C (2.2) BS02 SO4 2.7.6.1 GO:0000287 ... Q5SHU3 28580926
    403597 5t3q:A (2.0) BS01 75H 2.7.10.1 GO:0004672 ... P08581 N/A BindingDB: Ki=2.7nM, IC50=2.7nM
    403598 5t3r:A (3.1) BS01 MG ? GO:0009279 ... Q8A6W4 28077872
    403599 5t3r:D (3.1) BS01 MG ? N/A Q8A6W3 28077872
    403600 5t3s:D (4.5) BS01 MAN N/A N/A N/A 27617678

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).