SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    410801 5uj7:D (3.394) BS01 ATP ? GO:0000166 ... O43929 28112645
    410802 5uj7:D (3.394) BS02 MG ? GO:0000166 ... O43929 28112645
    410803 5uj7:E (3.394) BS01 ATP ? GO:0000808 ... O43913 28112645
    410804 5uj7:F (3.394) BS01 ATP ? GO:0000808 ... O43913 28112645
    410805 5uja:A (3.34) BS01 LTX 7.6.2.2
    7.6.2.3
    GO:0005524 ... Q8HXQ5 28238471
    410806 5ujb:A (2.7) BS01 6AK ? GO:0005615 ... P02768 28428041
    410807 5ujb:B (2.7) BS01 6AK ? GO:0005615 ... P02768 28428041
    410808 5ujc:A (1.35) BS01 COB 1.16.1.- GO:0005737 ... Q7Z144 28442570
    410809 5ujf:A (2.3) BS01 MMV 1.5.1.3 GO:0004146 ... P9WNX1 N/A
    410810 5ujj:A (2.1) BS01 TYM 6.1.1.2 GO:0000166 ... P23381 28910573
    410811 5ujj:B (2.1) BS01 TYM 6.1.1.2 GO:0000166 ... P23381 28910573
    410812 5ujk:A (1.53) BS01 NAD 1.1.1.37 GO:0003824 ... Q84FY8 30279311
    410813 5ujm:A (18.0) BS01 ATP ? GO:0005524 ... Q13415 28112645
    410814 5ujm:A (18.0) BS02 MG ? GO:0005524 ... Q13415 28112645
    410815 5ujm:D (18.0) BS01 ATP ? GO:0000166 ... O43929 28112645
    410816 5ujm:E (18.0) BS01 ATP ? GO:0000166 ... O43913 28112645
    410817 5ujo:A (1.35) BS01 8CY 3.5.2.6 GO:0008800 ... Q9L5C8 29051683
    410818 5ujo:A (1.35) BS02 LSI 3.5.2.6 GO:0008800 ... Q9L5C8 29051683
    410819 5ujo:B (1.35) BS01 8CY 3.5.2.6 GO:0008800 ... Q9L5C8 29051683
    410820 5ujo:B (1.35) BS02 LSI 3.5.2.6 GO:0008800 ... Q9L5C8 29051683
    410821 5ujp:A (1.42) BS01 CA ? GO:0046872 ... A0A125SA29 N/A
    410822 5ujp:B (1.42) BS01 CA ? GO:0046872 ... A0A125SA29 N/A
    410823 5ujt:A (1.94) BS01 peptide ? GO:0006955 ... Q5Y7C3 29255035
    410824 5ujt:B (1.94) BS01 peptide ? GO:0006955 ... O19707 29255035
    410825 5ujt:D (1.94) BS01 peptide ? GO:0006955 ... Q5Y7C3 29255035
    410826 5ujt:E (1.94) BS01 peptide ? GO:0006955 ... O19707 29255035
    410827 5ujt:G (1.94) BS01 peptide ? GO:0006955 ... Q5Y7C3 29255035
    410828 5ujt:G (1.94) BS02 peptide ? GO:0006955 ... Q5Y7C3 29255035
    410829 5ujt:H (1.94) BS01 peptide ? GO:0006955 ... O19707 29255035
    410830 5ujv:A (2.7) BS01 A8S ? GO:0004864 ... A0A2D1UXN2 29070857
    410831 5ujv:B (2.7) BS01 A8S ? GO:0004864 ... A0A2D1UXN2 29070857
    410832 5ujv:C (2.7) BS01 A8S ? GO:0004864 ... A0A2D1UXN2 29070857
    410833 5uk4:A (3.204) BS01 rna ? GO:0003723 ... P03521 28396572
    410834 5uk4:B (3.204) BS01 rna ? GO:0003723 ... P03521 28396572
    410835 5uk4:C (3.204) BS01 rna ? GO:0003723 ... P03521 28396572
    410836 5uk4:D (3.204) BS01 rna ? GO:0003723 ... P03521 28396572
    410837 5uk4:E (3.204) BS01 rna ? GO:0003723 ... P03521 28396572
    410838 5uk4:F (3.204) BS01 rna ? GO:0003723 ... P03521 28396572
    410839 5uk4:G (3.204) BS01 rna ? GO:0003723 ... P03521 28396572
    410840 5uk4:H (3.204) BS01 rna ? GO:0003723 ... P03521 28396572
    410841 5uk4:I (3.204) BS01 rna ? GO:0003723 ... P03521 28396572
    410842 5uk4:J (3.204) BS01 rna ? GO:0003723 ... P03521 28396572
    410843 5uk4:K (3.204) BS01 rna ? GO:0003723 ... P03521 28396572
    410844 5uk4:L (3.204) BS01 rna ? GO:0003723 ... P03521 28396572
    410845 5uk4:M (3.204) BS01 rna ? GO:0003723 ... P03521 28396572
    410846 5uk4:N (3.204) BS01 rna ? GO:0003723 ... P03521 28396572
    410847 5uk4:O (3.204) BS01 rna ? GO:0003723 ... P03521 28396572
    410848 5uk4:P (3.204) BS01 rna ? GO:0003723 ... P03521 28396572
    410849 5uk4:Q (3.204) BS01 rna ? GO:0003723 ... P03521 28396572
    410850 5uk4:R (3.204) BS01 rna ? GO:0003723 ... P03521 28396572
    410851 5uk4:S (3.204) BS01 rna ? GO:0003723 ... P03521 28396572
    410852 5uk4:T (3.204) BS01 rna ? GO:0003723 ... P03521 28396572
    410853 5uk5:A (2.506) BS01 BGC ? GO:0005509 ... Q07008 28254785
    410854 5uk5:A (2.506) BS02 XYS ? GO:0005509 ... Q07008 28254785
    410855 5uk5:A (2.506) BS03 CA ? GO:0005509 ... Q07008 28254785
    410856 5uk5:A (2.506) BS04 CA ? GO:0005509 ... Q07008 28254785
    410857 5uk5:A (2.506) BS05 CA ? GO:0005509 ... Q07008 28254785
    410858 5uk5:A (2.506) BS06 FUC ? GO:0005509 ... Q07008 28254785
    410859 5uk5:B (2.506) BS01 FUC ? GO:0005509 ... Q63722 28254785
    410860 5uk5:B (2.506) BS02 FUC ? GO:0005509 ... Q63722 28254785
    410861 5uk7:C (3.0) BS01 dna ? GO:0003723 ... P0A6X3 N/A
    410862 5uk7:C (3.0) BS02 dna ? GO:0003723 ... P0A6X3 N/A
    410863 5uk8:A (2.5) BS01 8DV 2.7.11.1
    2.7.1.137
    2.7.1.153
    GO:0001525 ... P42336 28433539 MOAD: Kd=0.4uM
    410864 5uk9:A (1.887) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 29706533
    410865 5ukb:A (5.473) BS01 rna ? GO:0003723 ... A6H4P1 28396572
    410866 5ukb:B (5.473) BS01 rna ? GO:0003723 ... A6H4P1 28396572
    410867 5ukb:C (5.473) BS01 rna ? GO:0003723 ... A6H4P1 28396572
    410868 5ukb:D (5.473) BS01 rna ? GO:0003723 ... A6H4P1 28396572
    410869 5ukb:E (5.473) BS01 rna ? GO:0003723 ... A6H4P1 28396572
    410870 5ukd:A (1.9) BS01 ADP 2.7.4.14 GO:0000287 ... P20425 10426946
    410871 5ukd:A (1.9) BS02 C5P 2.7.4.14 GO:0000287 ... P20425 10426946
    410872 5ukd:A (1.9) BS03 AF3 2.7.4.14 GO:0000287 ... P20425 10426946
    410873 5ukf:A (2.4) BS01 8E1 2.7.11.1 GO:0000785 ... Q99986 28790404
    410874 5ukf:B (2.4) BS01 8E1 2.7.11.1 GO:0000785 ... Q99986 28790404
    410875 5ukf:C (2.4) BS01 8E1 2.7.11.1 GO:0000785 ... Q99986 28790404
    410876 5ukf:D (2.4) BS01 8E1 2.7.11.1 GO:0000785 ... Q99986 28790404
    410877 5ukg:A (2.36) BS01 CA N/A GO:0005509 ... N/A 29338710
    410878 5ukg:A (2.36) BS02 CA N/A GO:0005509 ... N/A 29338710
    410879 5ukg:A (2.36) BS03 CA N/A GO:0005509 ... N/A 29338710
    410880 5ukg:A (2.36) BS04 CA N/A GO:0005509 ... N/A 29338710
    410881 5ukg:B (2.36) BS01 CA N/A GO:0005509 ... N/A 29338710
    410882 5ukg:B (2.36) BS02 CA N/A GO:0005509 ... N/A 29338710
    410883 5ukg:B (2.36) BS03 CA N/A GO:0005509 ... N/A 29338710
    410884 5ukg:B (2.36) BS04 CA N/A GO:0005509 ... N/A 29338710
    410885 5ukh:A (1.98) BS01 CA ? N/A T1ZG69 28696203
    410886 5uki:A (1.8) BS01 ZN 3.1.4.- GO:0000375 ... C4M1P9 28504306
    410887 5uki:A (1.8) BS02 MN 3.1.4.- GO:0000375 ... C4M1P9 28504306
    410888 5ukj:A (2.8) BS01 3K6 2.7.11.1
    2.7.1.137
    2.7.1.153
    GO:0001525 ... P42336 28433539 BindingDB: IC50=>10000nM
    410889 5ukk:A (2.6) BS01 MG 2.7.11.15 GO:0001664 ... P25098 28323425
    410890 5ukk:A (2.6) BS02 8DJ 2.7.11.15 GO:0001664 ... P25098 28323425
    410891 5ukl:A (2.15) BS01 MG 2.7.11.15 GO:0001664 ... P25098 28323425
    410892 5ukl:A (2.15) BS02 SIX 2.7.11.15 GO:0001664 ... P25098 28323425 MOAD: ic50=0.63uM
    410893 5ukm:A (3.03) BS01 T0E 2.7.11.15 GO:0001664 ... P21146 28323425 BindingDB: IC50=30nM
    410894 5ukm:A (3.03) BS02 MG 2.7.11.15 GO:0001664 ... P21146 28323425
    410895 5ukw:A (2.65) BS01 BG6 1.1.1.49 GO:0004345 ... P11413 28370139
    410896 5ul0:A (2.2) BS01 HEM ? GO:0004497 ... A6ZSR0 30397057
    410897 5ul0:A (2.2) BS02 VT1 ? GO:0004497 ... A6ZSR0 30397057
    410898 5ul1:A (3.0) BS01 8DY 2.7.11.1
    2.7.1.137
    2.7.1.153
    GO:0001525 ... P42336 28433539
    410899 5ul3:A (1.8) BS01 SF4 ? GO:0003824 ... O24770 28346939
    410900 5ul3:A (1.8) BS02 B12 ? GO:0003824 ... O24770 28346939
    410901 5ul4:A (1.85) BS01 SF4 ? GO:0003824 ... O24770 28346939
    410902 5ul4:A (1.85) BS02 B12 ? GO:0003824 ... O24770 28346939
    410903 5ul4:A (1.85) BS03 SAM ? GO:0003824 ... O24770 28346939
    410904 5ul5:A (2.2) BS01 FE2 3.1.1.64
    5.3.3.22
    GO:0001523 ... Q28175 28476927
    410905 5ul5:A (2.2) BS02 8D7 3.1.1.64
    5.3.3.22
    GO:0001523 ... Q28175 28476927 MOAD: ic50=106nM
    BindingDB: IC50=<1000nM
    410906 5ul5:B (2.2) BS01 FE2 3.1.1.64
    5.3.3.22
    GO:0001523 ... Q28175 28476927
    410907 5ul5:B (2.2) BS02 8D7 3.1.1.64
    5.3.3.22
    GO:0001523 ... Q28175 28476927 MOAD: ic50=106nM
    BindingDB: IC50=<1000nM
    410908 5ul6:A (1.45) BS01 peptide ? N/A P46108 28368102
    410909 5ula:A (1.5) BS01 5MJ ? N/A O60885 28265070 MOAD: Ki=77nM
    410910 5ula:B (1.5) BS01 5MJ ? N/A O60885 28265070 MOAD: Ki=77nM
    410911 5ulb:A (1.28) BS01 8GA ? GO:0030246 ... A1JTX8 N/A
    410912 5ulb:A (1.28) BS02 8GG ? GO:0030246 ... A1JTX8 N/A
    410913 5ulg:A (2.1) BS01 FE2 3.1.1.64
    5.3.3.22
    GO:0001523 ... Q28175 28476927
    410914 5ulg:A (2.1) BS02 8E4 3.1.1.64
    5.3.3.22
    GO:0001523 ... Q28175 28476927 MOAD: ic50=189nM
    410915 5ulg:B (2.1) BS01 FE2 3.1.1.64
    5.3.3.22
    GO:0001523 ... Q28175 28476927
    410916 5ulg:B (2.1) BS02 8E4 3.1.1.64
    5.3.3.22
    GO:0001523 ... Q28175 28476927 MOAD: ic50=189nM
    410917 5ulh:C (1.95) BS01 ZN 2.3.2.27 GO:0008270 ... Q6ZSG1 N/A
    410918 5ulh:C (1.95) BS02 ZN 2.3.2.27 GO:0008270 ... Q6ZSG1 N/A
    410919 5uli:A (2.1) BS01 CA 3.1.13.-
    3.6.1.-
    GO:0000166 ... O70348 28283058
    410920 5uli:A (2.1) BS02 0WD 3.1.13.-
    3.6.1.-
    GO:0000166 ... O70348 28283058
    410921 5ulj:A (1.911) BS01 CA 3.6.1.- GO:0000166 ... A3LNL5 28283058
    410922 5ulj:A (1.911) BS02 0WD 3.6.1.- GO:0000166 ... A3LNL5 28283058
    410923 5ulj:B (1.911) BS01 CA 3.6.1.- GO:0000166 ... A3LNL5 28283058
    410924 5ulj:B (1.911) BS02 0WD 3.6.1.- GO:0000166 ... A3LNL5 28283058
    410925 5ulk:C (2.38) BS01 ZN 2.3.2.27 GO:0008270 ... Q6ZSG1 N/A
    410926 5ulk:C (2.38) BS02 ZN 2.3.2.27 GO:0008270 ... Q6ZSG1 N/A
    410927 5ull:A (1.8) BS01 FMN ? GO:0009055 ... P00322 9063874
    410928 5uln:A (1.35) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 28947945
    410929 5uln:A (1.35) BS02 8JS 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 28947945 MOAD: Ki=14.2nM
    BindingDB: Ki=14nM
    410930 5ulo:A (2.14) BS01 peptide ? GO:0000122 ... P63104 N/A
    410931 5ulo:B (2.14) BS01 peptide ? GO:0000122 ... P63104 N/A
    410932 5ulp:A (1.55) BS01 KB1 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004482 ... A0A024B7W1 28487506 MOAD: Kd=24.3uM
    410933 5ulp:B (1.55) BS01 KB1 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004482 ... A0A024B7W1 28487506 MOAD: Kd=24.3uM
    410934 5uls:A (2.622) BS01 ANP ? GO:0005524 ... P41148 28930677
    410935 5uls:B (2.622) BS01 ANP ? GO:0005524 ... P41148 28930677
    410936 5ult:A (1.53) BS01 8FM 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P03366 28418652
    410937 5ult:B (1.53) BS01 8FM 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P03366 28418652 MOAD: Ki=0.014nM
    410938 5ulu:A (2.85) BS01 CA ? GO:0005509 ... Q99PF4 30033219
    410939 5ulu:A (2.85) BS02 CA ? GO:0005509 ... Q99PF4 30033219
    410940 5ulu:A (2.85) BS03 CA ? GO:0005509 ... Q99PF4 30033219
    410941 5ulu:A (2.85) BS04 CA ? GO:0005509 ... Q99PF4 30033219
    410942 5ulu:A (2.85) BS05 CA ? GO:0005509 ... Q99PF4 30033219
    410943 5ulu:A (2.85) BS06 CA ? GO:0005509 ... Q99PF4 30033219
    410944 5ulw:A (2.617) BS01 dna 2.7.7.7 GO:0003684 ... Q9UNA4 28272441
    410945 5ulw:A (2.617) BS02 dna 2.7.7.7 GO:0003684 ... Q9UNA4 28272441
    410946 5ulw:A (2.617) BS03 TTP 2.7.7.7 GO:0003684 ... Q9UNA4 28272441
    410947 5ulw:A (2.617) BS04 MG 2.7.7.7 GO:0003684 ... Q9UNA4 28272441
    410948 5ulx:A (1.96) BS01 dna 2.7.7.7 GO:0003684 ... Q9UNA4 28272441
    410949 5ulx:A (1.96) BS02 dna 2.7.7.7 GO:0003684 ... Q9UNA4 28272441
    410950 5uly:A (2.64) BS01 CA ? GO:0005509 ... Q96QU1 32963095
    410951 5uly:A (2.64) BS02 CA ? GO:0005509 ... Q96QU1 32963095
    410952 5uly:B (2.64) BS01 CA ? GO:0005509 ... Q96QU1 32963095
    410953 5uly:B (2.64) BS02 CA ? GO:0005509 ... Q96QU1 32963095
    410954 5uly:C (2.64) BS01 CA ? GO:0005509 ... Q96QU1 32963095
    410955 5uly:C (2.64) BS02 CA ? GO:0005509 ... Q96QU1 32963095
    410956 5uly:D (2.64) BS01 CA ? GO:0005509 ... Q96QU1 32963095
    410957 5uly:D (2.64) BS02 CA ? GO:0005509 ... Q96QU1 32963095
    410958 5um2:A (1.14) BS01 SO4 N/A GO:0140104 ... N/A 28562158
    410959 5um2:A (1.14) BS02 SO4 N/A GO:0140104 ... N/A 28562158
    410960 5um3:A (1.198) BS01 ZN 2.3.2.27 GO:0008270 ... Q8IWV8 28392261
    410961 5um3:A (1.198) BS02 ZN 2.3.2.27 GO:0008270 ... Q8IWV8 28392261
    410962 5um3:A (1.198) BS03 ZN 2.3.2.27 GO:0008270 ... Q8IWV8 28392261
    410963 5um6:A (2.794) BS01 8EA 6.2.1.45 GO:0000287 ... O94609 28572513
    410964 5um8:L (3.935) BS01 MAN N/A N/A N/A 28514686
    410965 5um8:L (3.935) BS02 MAN N/A N/A N/A 28514686
    410966 5um9:A (2.805) BS01 dna 3.1.-.- GO:0003677 ... P39748 28653660
    410967 5um9:A (2.805) BS02 dna 3.1.-.- GO:0003677 ... P39748 28653660
    410968 5um9:A (2.805) BS03 dna 3.1.-.- GO:0003677 ... P39748 28653660
    410969 5umb:A (2.3) BS01 ADP 3.6.4.10 GO:0005524 ... Q05866 29985421
    410970 5umb:B (2.3) BS01 ADP 3.6.4.10 GO:0005524 ... Q05866 29985421
    410971 5umb:C (2.3) BS01 ADP 3.6.4.10 GO:0005524 ... Q05866 29985421
    410972 5umb:D (2.3) BS01 ADP 3.6.4.10 GO:0005524 ... Q05866 29985421
    410973 5umc:A (2.15) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 28947945
    410974 5umd:0 (3.2) BS01 rna ? GO:0002181 ... Q8IEM3 28288098
    410975 5umd:1 (3.2) BS01 rna ? GO:0003735 ... Q8IKM5 28288098
    410976 5umd:2 (3.2) BS01 rna ? GO:0005840 ... Q8IHU0 28288098
    410977 5umd:2 (3.2) BS02 YMZ ? GO:0005840 ... Q8IHU0 28288098
    410978 5umd:3 (3.2) BS01 rna ? GO:0000463 ... Q8IIB4 28288098
    410979 5umd:3 (3.2) BS02 rna ? GO:0000463 ... Q8IIB4 28288098
    410980 5umd:4 (3.2) BS01 rna ? GO:0002181 ... C6S3J6 28288098
    410981 5umd:5 (3.2) BS01 rna ? GO:0000463 ... O97250 28288098
    410982 5umd:5 (3.2) BS02 rna ? GO:0000463 ... O97250 28288098
    410983 5umd:6 (3.2) BS01 rna ? GO:0003723 ... Q8IJK8 28288098
    410984 5umd:7 (3.2) BS01 rna ? GO:0002181 ... Q8I463 28288098
    410985 5umd:8 (3.2) BS01 rna ? GO:0003735 ... Q8I3B0 28288098
    410986 5umd:9 (3.2) BS01 rna ? GO:0002181 ... Q8IHT9 28288098
    410987 5umd:D (3.2) BS01 rna ? GO:0002181 ... Q8I3T9 28288098
    410988 5umd:D (3.2) BS02 MG ? GO:0002181 ... Q8I3T9 28288098
    410989 5umd:E (3.2) BS01 rna ? GO:0003723 ... Q8IJC6 28288098
    410990 5umd:F (3.2) BS01 rna ? GO:0003723 ... Q8I431 28288098
    410991 5umd:F (3.2) BS02 rna ? GO:0003723 ... Q8I431 28288098
    410992 5umd:G (3.2) BS01 rna ? GO:0003723 ... Q8IBQ6 28288098
    410993 5umd:G (3.2) BS02 rna ? GO:0003723 ... Q8IBQ6 28288098
    410994 5umd:H (3.2) BS01 rna ? GO:0002181 ... Q8IE85 28288098
    410995 5umd:I (3.2) BS01 rna N/A GO:0003735 ... N/A 28288098
    410996 5umd:J (3.2) BS01 rna ? GO:0000470 ... Q8ILL2 28288098
    410997 5umd:K (3.2) BS01 rna ? GO:0003729 ... Q8IJZ7 28288098
    410998 5umd:K (3.2) BS02 YMZ ? GO:0003729 ... Q8IJZ7 28288098
    410999 5umd:L (3.2) BS01 rna ? GO:0003723 ... Q8IAX6 28288098
    411000 5umd:L (3.2) BS02 rna ? GO:0003723 ... Q8IAX6 28288098

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).