SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    413601 5v3g:D (2.416) BS01 dna 2.1.1.43 N/A D9IWL3 28801461
    413602 5v3g:D (2.416) BS02 dna 2.1.1.43 N/A D9IWL3 28801461
    413603 5v3g:D (2.416) BS03 peptide 2.1.1.43 N/A D9IWL3 28801461
    413604 5v3g:D (2.416) BS04 ZN 2.1.1.43 N/A D9IWL3 28801461
    413605 5v3g:D (2.416) BS05 ZN 2.1.1.43 N/A D9IWL3 28801461
    413606 5v3g:D (2.416) BS06 ZN 2.1.1.43 N/A D9IWL3 28801461
    413607 5v3g:D (2.416) BS07 ZN 2.1.1.43 N/A D9IWL3 28801461
    413608 5v3g:D (2.416) BS08 ZN 2.1.1.43 N/A D9IWL3 28801461
    413609 5v3g:D (2.416) BS09 ZN 2.1.1.43 N/A D9IWL3 28801461
    413610 5v3h:A (2.69) BS01 SAM 2.1.1.-
    2.1.1.354
    GO:0000122 ... Q9NRG4 29856759
    413611 5v3h:A (2.69) BS02 ZN 2.1.1.-
    2.1.1.354
    GO:0000122 ... Q9NRG4 29856759
    413612 5v3h:A (2.69) BS03 ZN 2.1.1.-
    2.1.1.354
    GO:0000122 ... Q9NRG4 29856759
    413613 5v3h:A (2.69) BS04 ZN 2.1.1.-
    2.1.1.354
    GO:0000122 ... Q9NRG4 29856759
    413614 5v3h:A (2.69) BS05 8WG 2.1.1.-
    2.1.1.354
    GO:0000122 ... Q9NRG4 29856759 BindingDB: IC50=3.90nM
    413615 5v3h:A (2.69) BS06 8WG 2.1.1.-
    2.1.1.354
    GO:0000122 ... Q9NRG4 29856759 BindingDB: IC50=3.90nM
    413616 5v3j:E (2.064) BS01 dna ? N/A E9PYI1 29551271
    413617 5v3j:E (2.064) BS02 dna ? N/A E9PYI1 29551271
    413618 5v3j:E (2.064) BS03 ZN ? N/A E9PYI1 29551271
    413619 5v3j:E (2.064) BS04 ZN ? N/A E9PYI1 29551271
    413620 5v3j:E (2.064) BS05 ZN ? N/A E9PYI1 29551271
    413621 5v3j:E (2.064) BS06 ZN ? N/A E9PYI1 29551271
    413622 5v3j:E (2.064) BS07 ZN ? N/A E9PYI1 29551271
    413623 5v3j:E (2.064) BS08 ZN ? N/A E9PYI1 29551271
    413624 5v3j:E (2.064) BS09 ZN ? N/A E9PYI1 29551271
    413625 5v3j:E (2.064) BS10 ZN ? N/A E9PYI1 29551271
    413626 5v3j:E (2.064) BS11 ZN ? N/A E9PYI1 29551271
    413627 5v3j:E (2.064) BS12 ZN ? N/A E9PYI1 29551271
    413628 5v3j:E (2.064) BS13 MG ? N/A E9PYI1 29551271
    413629 5v3j:F (2.064) BS01 dna ? N/A E9PYI1 29551271
    413630 5v3j:F (2.064) BS02 dna ? N/A E9PYI1 29551271
    413631 5v3j:F (2.064) BS03 ZN ? N/A E9PYI1 29551271
    413632 5v3j:F (2.064) BS04 ZN ? N/A E9PYI1 29551271
    413633 5v3j:F (2.064) BS05 ZN ? N/A E9PYI1 29551271
    413634 5v3j:F (2.064) BS06 ZN ? N/A E9PYI1 29551271
    413635 5v3j:F (2.064) BS07 ZN ? N/A E9PYI1 29551271
    413636 5v3j:F (2.064) BS08 ZN ? N/A E9PYI1 29551271
    413637 5v3j:F (2.064) BS09 ZN ? N/A E9PYI1 29551271
    413638 5v3j:F (2.064) BS10 ZN ? N/A E9PYI1 29551271
    413639 5v3j:F (2.064) BS11 ZN ? N/A E9PYI1 29551271
    413640 5v3j:F (2.064) BS12 ZN ? N/A E9PYI1 29551271
    413641 5v3j:F (2.064) BS13 MG ? N/A E9PYI1 29551271
    413642 5v3m:C (2.091) BS01 dna ? N/A E9PYI1 29551271
    413643 5v3m:C (2.091) BS02 dna ? N/A E9PYI1 29551271
    413644 5v3m:C (2.091) BS03 ZN ? N/A E9PYI1 29551271
    413645 5v3m:C (2.091) BS04 ZN ? N/A E9PYI1 29551271
    413646 5v3m:C (2.091) BS05 ZN ? N/A E9PYI1 29551271
    413647 5v3m:C (2.091) BS06 ZN ? N/A E9PYI1 29551271
    413648 5v3m:C (2.091) BS07 ZN ? N/A E9PYI1 29551271
    413649 5v3m:C (2.091) BS08 ZN ? N/A E9PYI1 29551271
    413650 5v3m:C (2.091) BS09 ZN ? N/A E9PYI1 29551271
    413651 5v3m:C (2.091) BS10 ZN ? N/A E9PYI1 29551271
    413652 5v3m:C (2.091) BS11 ZN ? N/A E9PYI1 29551271
    413653 5v3m:C (2.091) BS12 ZN ? N/A E9PYI1 29551271
    413654 5v3o:C (3.2) BS01 8W7 ? GO:0005515 ... Q96SW2 28425720
    413655 5v3o:C (3.2) BS02 ZN ? GO:0005515 ... Q96SW2 28425720
    413656 5v3q:A (2.25) BS01 MLX 1.20.4.2
    1.8.5.1
    2.5.1.18
    GO:0004364 ... P78417 29259211
    413657 5v3q:A (2.25) BS02 SO4 1.20.4.2
    1.8.5.1
    2.5.1.18
    GO:0004364 ... P78417 29259211
    413658 5v3q:A (2.25) BS03 SO4 1.20.4.2
    1.8.5.1
    2.5.1.18
    GO:0004364 ... P78417 29259211
    413659 5v3r:A (1.906) BS01 peptide ? N/A Q8WUM4 30181294
    413660 5v3t:A (1.899) BS01 HEM ? GO:0005344 ... A0A6L7H965 N/A
    413661 5v3t:B (1.899) BS01 HEM ? GO:0005344 ... A0A6L7H965 N/A
    413662 5v3u:A (2.5) BS01 HEM ? GO:0005344 ... A0A6L7H965 N/A
    413663 5v3u:B (2.5) BS01 HEM ? GO:0005344 ... A0A6L7H965 N/A
    413664 5v3v:A (2.14) BS01 HEM ? GO:0005344 ... A0A6L7H965 N/A
    413665 5v3v:B (2.14) BS01 HEM ? GO:0005344 ... A0A6L7H965 N/A
    413666 5v3w:A (1.723) BS01 2Q5 2.3.1.- GO:0009058 ... I6X8D2 28669536
    413667 5v3w:B (1.723) BS01 2Q5 2.3.1.- GO:0009058 ... I6X8D2 28669536
    413668 5v3x:A (1.936) BS01 I28 2.3.1.- GO:0009058 ... I6X8D2 28669536 MOAD: ic50=0.26uM
    BindingDB: IC50=260nM
    413669 5v3x:B (1.936) BS01 I28 2.3.1.- GO:0009058 ... I6X8D2 28669536 MOAD: ic50=0.26uM
    BindingDB: IC50=260nM
    413670 5v3y:A (1.98) BS01 5V8 2.3.1.- GO:0009058 ... I6X8D2 28669536 MOAD: ic50=0.19uM
    BindingDB: IC50=0.190000nM
    413671 5v3y:B (1.98) BS01 5V8 2.3.1.- GO:0009058 ... I6X8D2 28669536 MOAD: ic50=0.19uM
    BindingDB: IC50=0.190000nM
    413672 5v40:A (1.991) BS01 JS1 2.3.1.- GO:0009058 ... I6X8D2 28669536 MOAD: ic50=1.57uM
    413673 5v40:B (1.991) BS01 JS1 2.3.1.- GO:0009058 ... I6X8D2 28669536 MOAD: ic50=1.57uM
    413674 5v41:A (2.051) BS01 J24 2.3.1.- GO:0009058 ... I6X8D2 28669536 MOAD: ic50=0.71uM
    413675 5v42:A (1.987) BS01 I66 2.3.1.- GO:0009058 ... I6X8D2 28669536 MOAD: ic50=0.24uM
    413676 5v42:B (1.987) BS01 I66 2.3.1.- GO:0009058 ... I6X8D2 28669536 MOAD: ic50=0.24uM
    413677 5v48:A (2.9965) BS01 ZN 3.4.24.11 GO:0001822 ... P08049 31204686
    413678 5v48:A (2.9965) BS02 TIO 3.4.24.11 GO:0001822 ... P08049 31204686 BindingDB: IC50=5nM, Ki=1.9nM
    413679 5v48:B (2.9965) BS01 ZN 3.4.24.11 GO:0001822 ... P08049 31204686
    413680 5v48:B (2.9965) BS02 TIO 3.4.24.11 GO:0001822 ... P08049 31204686 BindingDB: IC50=5nM, Ki=1.9nM
    413681 5v49:A (2.3) BS01 MET 6.1.1.10 GO:0000166 ... Q38C91 28465105
    413682 5v49:B (2.3) BS01 8WA 6.1.1.10 GO:0000166 ... Q38C91 28465105 MOAD: ic50<50nM
    413683 5v4a:A (1.75) BS01 UDP ? N/A A3CM53 N/A
    413684 5v4a:B (1.75) BS01 UDP ? N/A A3CM53 N/A
    413685 5v4b:B (2.6) BS01 peptide ? N/A Q969H0 28727686
    413686 5v4d:A (1.6) BS01 CA ? GO:0005829 ... A0A3N4B564 N/A
    413687 5v4d:B (1.6) BS01 CA ? GO:0005829 ... A0A3N4B564 N/A
    413688 5v4d:E (1.6) BS01 CA ? GO:0005829 ... A0A3N4B564 N/A
    413689 5v4e:G (3.216) BS01 BMA ? N/A P01857 28604720
    413690 5v4g:A (1.2) BS01 RU7 3.2.1.17 GO:0003796 ... P00698 28361137
    413691 5v4g:A (1.2) BS02 RU7 3.2.1.17 GO:0003796 ... P00698 28361137
    413692 5v4h:A (1.22) BS01 RU7 3.2.1.17 GO:0003796 ... P00698 28361137
    413693 5v4i:A (1.5) BS01 8WV 3.2.1.17 GO:0003796 ... P00698 28361137
    413694 5v4o:A (1.95) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 28409923
    413695 5v4o:A (1.95) BS02 OXY 1.11.1.21 GO:0004096 ... Q3JNW6 28409923
    413696 5v4o:B (1.95) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 28409923
    413697 5v4o:B (1.95) BS02 OXY 1.11.1.21 GO:0004096 ... Q3JNW6 28409923
    413698 5v4p:A (1.88) BS01 FMN 1.6.99.1 GO:0003959 ... P41816 N/A
    413699 5v4p:A (1.88) BS02 HBA 1.6.99.1 GO:0003959 ... P41816 N/A
    413700 5v4p:B (1.88) BS01 FMN 1.6.99.1 GO:0003959 ... P41816 N/A
    413701 5v4p:B (1.88) BS02 HBA 1.6.99.1 GO:0003959 ... P41816 N/A
    413702 5v4q:B (2.2) BS01 8WY 2.3.2.2
    3.4.19.13
    3.4.19.14
    GO:0006751 ... P19440 28378915
    413703 5v4r:A (1.77) BS01 MGT ? GO:0000339 ... Q6PKG0 28379136
    413704 5v4r:B (1.77) BS01 MGT ? GO:0000339 ... Q6PKG0 28379136
    413705 5v4t:A (1.7) BS01 FE ? GO:0016491 ... Q970H5 N/A
    413706 5v4t:B (1.7) BS01 FE ? GO:0016491 ... Q970H5 N/A
    413707 5v4v:A (1.798) BS01 FMN 1.6.99.1 GO:0003959 ... P41816 N/A
    413708 5v4v:A (1.798) BS02 NCA 1.6.99.1 GO:0003959 ... P41816 N/A
    413709 5v4v:B (1.798) BS01 FMN 1.6.99.1 GO:0003959 ... P41816 N/A
    413710 5v4v:B (1.798) BS02 NCA 1.6.99.1 GO:0003959 ... P41816 N/A
    413711 5v4w:A (2.39) BS01 GLC 2.7.1.1 GO:0001678 ... P35557 28512030
    413712 5v4w:A (2.39) BS02 8WM 2.7.1.1 GO:0001678 ... P35557 28512030 BindingDB: EC50=40nM
    413713 5v4x:A (2.08) BS01 GLC 2.7.1.1 GO:0001678 ... P35557 28512030
    413714 5v4x:A (2.08) BS02 8WJ 2.7.1.1 GO:0001678 ... P35557 28512030
    413715 5v4y:A (1.9) BS01 8FM ? GO:0004190 ... Q72874 28947797
    413716 5v51:A (2.92) BS01 SEY ? N/A H6U756 28798297
    413717 5v51:B (2.92) BS01 SEY ? N/A H6U756 28798297
    413718 5v51:D (2.92) BS01 SEY ? N/A H6U756 28798297
    413719 5v51:E (2.92) BS01 SEY ? N/A H6U756 28798297
    413720 5v51:E (2.92) BS02 SEY ? N/A H6U756 28798297
    413721 5v51:F (2.92) BS01 SEY ? N/A H6U756 28798297
    413722 5v51:G (2.92) BS01 SEY ? N/A H6U756 28798297
    413723 5v51:G (2.92) BS02 SEY ? N/A H6U756 28798297
    413724 5v51:G (2.92) BS03 SEY ? N/A H6U756 28798297
    413725 5v53:A (1.7) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 28409923
    413726 5v53:A (1.7) BS02 OXY 1.11.1.21 GO:0004096 ... Q3JNW6 28409923
    413727 5v53:B (1.7) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 28409923
    413728 5v53:B (1.7) BS02 OXY 1.11.1.21 GO:0004096 ... Q3JNW6 28409923
    413729 5v54:A (3.9) BS01 89F ? GO:0004930 ... P28222 N/A BindingDB: Ki=16.98nM
    413730 5v54:B (3.9) BS01 89F ? GO:0004930 ... P28222 N/A BindingDB: Ki=16.98nM
    413731 5v56:A (2.9) BS01 836 ? GO:0004888 ... P00323
    Q99835
    28513578
    413732 5v56:A (2.9) BS02 FMN ? GO:0004888 ... P00323
    Q99835
    28513578
    413733 5v56:B (2.9) BS01 836 ? GO:0004888 ... P00323
    Q99835
    28513578
    413734 5v56:B (2.9) BS02 FMN ? GO:0004888 ... P00323
    Q99835
    28513578
    413735 5v57:A (3.0) BS01 836 ? GO:0004888 ... P00323
    Q99835
    28513578
    413736 5v57:A (3.0) BS02 FMN ? GO:0004888 ... P00323
    Q99835
    28513578
    413737 5v57:B (3.0) BS01 836 ? GO:0004888 ... P00323
    Q99835
    28513578
    413738 5v57:B (3.0) BS02 FMN ? GO:0004888 ... P00323
    Q99835
    28513578
    413739 5v58:A (2.59) BS01 8X1 6.1.1.15
    6.1.1.17
    GO:0000166 ... P07814 29273753
    413740 5v58:A (2.59) BS02 ZN 6.1.1.15
    6.1.1.17
    GO:0000166 ... P07814 29273753
    413741 5v59:A (2.03) BS01 8X1 6.1.1.7 GO:0000166 ... P49588 29273753
    413742 5v5d:A (2.104) BS01 8OY 3.4.21.97 GO:0004252 ... O40922 28759216
    413743 5v5d:B (2.104) BS01 8OY 3.4.21.97 GO:0004252 ... O40922 28759216
    413744 5v5d:B (2.104) BS02 8OY 3.4.21.97 GO:0004252 ... O40922 28759216
    413745 5v5e:A (2.299) BS01 8N4 3.4.21.97 GO:0004252 ... O40922 28759216
    413746 5v5e:B (2.299) BS01 8N4 3.4.21.97 GO:0004252 ... O40922 28759216
    413747 5v5e:B (2.299) BS02 8N4 3.4.21.97 GO:0004252 ... O40922 28759216
    413748 5v5h:A (1.5) BS01 ZN 2.7.7.48
    3.1.-.-
    3.4.19.12
    3.4.22.-
    N/A Q6TQR6 28542609
    413749 5v5j:A (1.814) BS01 HEM ? GO:0004601 ... Q9NAV7 29128676
    413750 5v5j:A (1.814) BS02 OXY ? GO:0004601 ... Q9NAV7 29128676
    413751 5v5j:B (1.814) BS01 HEM ? GO:0004601 ... Q9NAV7 29128676
    413752 5v5j:B (1.814) BS02 OXY ? GO:0004601 ... Q9NAV7 29128676
    413753 5v5l:A (2.002) BS01 peptide ? N/A P01889 28552904
    413754 5v5l:C (2.002) BS01 peptide ? N/A P01889 28552904
    413755 5v5m:A (2.878) BS01 peptide ? N/A P01889 28552904
    413756 5v5m:C (2.878) BS01 peptide ? N/A P01889 28552904
    413757 5v5n:A (2.006) BS01 EDH 2.7.11.25 GO:0004672 ... O43318
    Q15750
    28820959 MOAD: ic50=9.5nM
    413758 5v5o:C (2.243) BS01 peptide ? GO:0005515 ... P52293 28900157
    413759 5v5o:C (2.243) BS02 peptide ? GO:0005515 ... P52293 28900157
    413760 5v5p:C (2.15) BS01 peptide ? GO:0005515 ... P52293 28900157
    413761 5v5p:C (2.15) BS02 peptide ? GO:0005515 ... P52293 28900157
    413762 5v5q:A (1.961) BS01 HEM ? GO:0004601 ... Q9NAV7 29128676
    413763 5v5q:A (1.961) BS02 OXY ? GO:0004601 ... Q9NAV7 29128676
    413764 5v5q:B (1.961) BS01 HEM ? GO:0004601 ... Q9NAV7 29128676
    413765 5v5q:B (1.961) BS02 OXY ? GO:0004601 ... Q9NAV7 29128676
    413766 5v5r:A (1.2) BS01 HEM ? GO:0004601 ... Q9NAV8 29128676
    413767 5v5r:A (1.2) BS02 OXY ? GO:0004601 ... Q9NAV8 29128676
    413768 5v5r:B (1.2) BS01 HEM ? GO:0004601 ... Q9NAV8 29128676
    413769 5v5r:B (1.2) BS02 OXY ? GO:0004601 ... Q9NAV8 29128676
    413770 5v5x:A (3.5) BS01 CA ? GO:0005509 ... Q91XX3 29087338
    413771 5v5x:A (3.5) BS02 CA ? GO:0005509 ... Q91XX3 29087338
    413772 5v5x:A (3.5) BS03 CA ? GO:0005509 ... Q91XX3 29087338
    413773 5v5x:A (3.5) BS04 CA ? GO:0005509 ... Q91XX3 29087338
    413774 5v5x:A (3.5) BS05 CA ? GO:0005509 ... Q91XX3 29087338
    413775 5v5x:A (3.5) BS06 CA ? GO:0005509 ... Q91XX3 29087338
    413776 5v5x:A (3.5) BS07 CA ? GO:0005509 ... Q91XX3 29087338
    413777 5v5x:A (3.5) BS08 CA ? GO:0005509 ... Q91XX3 29087338
    413778 5v5x:A (3.5) BS09 CA ? GO:0005509 ... Q91XX3 29087338
    413779 5v5x:A (3.5) BS10 MAN ? GO:0005509 ... Q91XX3 29087338
    413780 5v5x:A (3.5) BS11 MAN ? GO:0005509 ... Q91XX3 29087338
    413781 5v5x:A (3.5) BS12 MAN ? GO:0005509 ... Q91XX3 29087338
    413782 5v5x:B (3.5) BS01 CA ? GO:0005509 ... Q91XX3 29087338
    413783 5v5x:B (3.5) BS02 CA ? GO:0005509 ... Q91XX3 29087338
    413784 5v5x:B (3.5) BS03 CA ? GO:0005509 ... Q91XX3 29087338
    413785 5v5x:B (3.5) BS04 CA ? GO:0005509 ... Q91XX3 29087338
    413786 5v5x:B (3.5) BS05 CA ? GO:0005509 ... Q91XX3 29087338
    413787 5v5x:B (3.5) BS06 CA ? GO:0005509 ... Q91XX3 29087338
    413788 5v5x:B (3.5) BS07 CA ? GO:0005509 ... Q91XX3 29087338
    413789 5v5x:B (3.5) BS08 CA ? GO:0005509 ... Q91XX3 29087338
    413790 5v5x:B (3.5) BS09 CA ? GO:0005509 ... Q91XX3 29087338
    413791 5v5x:B (3.5) BS10 MAN ? GO:0005509 ... Q91XX3 29087338
    413792 5v5x:B (3.5) BS11 MAN ? GO:0005509 ... Q91XX3 29087338
    413793 5v5x:B (3.5) BS12 MAN ? GO:0005509 ... Q91XX3 29087338
    413794 5v5x:C (3.5) BS01 CA ? GO:0005509 ... Q91XX3 29087338
    413795 5v5x:C (3.5) BS02 CA ? GO:0005509 ... Q91XX3 29087338
    413796 5v5x:C (3.5) BS03 CA ? GO:0005509 ... Q91XX3 29087338
    413797 5v5x:C (3.5) BS04 CA ? GO:0005509 ... Q91XX3 29087338
    413798 5v5x:C (3.5) BS05 CA ? GO:0005509 ... Q91XX3 29087338
    413799 5v5x:C (3.5) BS06 CA ? GO:0005509 ... Q91XX3 29087338
    413800 5v5x:C (3.5) BS07 CA ? GO:0005509 ... Q91XX3 29087338

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).