SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    414801 5vdw:B (2.711) BS02 9BY 2.7.7.86 N/A Q8N884 28940468
    414802 5ve3:A (1.793) BS01 FE '1.13.11.18
    2.8.1.1'
    GO:0006749 ... B2TEQ2 28684420
    414803 5ve3:B (1.793) BS01 FE '1.13.11.18
    2.8.1.1'
    GO:0006749 ... B2TEQ2 28684420
    414804 5ve4:A (2.65) BS01 FE '1.13.11.18
    2.8.1.1'
    GO:0006749 ... B2TEQ2 28684420
    414805 5ve4:B (2.65) BS01 FE '1.13.11.18
    2.8.1.1'
    GO:0006749 ... B2TEQ2 28684420
    414806 5ve4:C (2.65) BS01 FE '1.13.11.18
    2.8.1.1'
    GO:0006749 ... B2TEQ2 28684420
    414807 5ve5:A (2.35) BS01 FE '1.13.11.18
    2.8.1.1'
    GO:0006749 ... B2TEQ2 28684420
    414808 5ve5:A (2.35) BS02 GSH '1.13.11.18
    2.8.1.1'
    GO:0006749 ... B2TEQ2 28684420
    414809 5ve5:B (2.35) BS01 FE '1.13.11.18
    2.8.1.1'
    GO:0006749 ... B2TEQ2 28684420
    414810 5ve5:B (2.35) BS02 GSH '1.13.11.18
    2.8.1.1'
    GO:0006749 ... B2TEQ2 28684420
    414811 5ve5:C (2.35) BS01 FE '1.13.11.18
    2.8.1.1'
    GO:0006749 ... B2TEQ2 28684420
    414812 5ve5:C (2.35) BS02 GSH '1.13.11.18
    2.8.1.1'
    GO:0006749 ... B2TEQ2 28684420
    414813 5ve7:A (2.3) BS01 UTP 2.7.7.9 GO:0003983 ... B1YNX3 N/A
    414814 5ve8:A (2.7) BS01 peptide ? GO:0005634 ... Q6CMF0 29035199
    414815 5ve8:B (2.7) BS01 peptide ? GO:0005634 ... Q6CMF0 29035199
    414816 5ve9:A (2.795) BS01 CA ? GO:0005509 ... Q9UPN3 28602822
    414817 5ve9:A (2.795) BS02 CA ? GO:0005509 ... Q9UPN3 28602822
    414818 5ve9:B (2.795) BS01 CA ? GO:0005509 ... Q9UPN3 28602822
    414819 5ve9:B (2.795) BS02 CA ? GO:0005509 ... Q9UPN3 28602822
    414820 5ve9:C (2.795) BS01 ZN ? GO:0008017 ... Q9UPN3 28602822
    414821 5vea:A (2.0) BS01 3TL 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P12497 N/A
    414822 5vea:A (2.0) BS02 9AY 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P12497 N/A
    414823 5vec:A (2.20002) BS01 MG 5.4.2.2 GO:0000287 ... P36871 30122451
    414824 5vec:B (2.20002) BS01 MG 5.4.2.2 GO:0000287 ... P36871 30122451
    414825 5ved:A (2.301) BS01 STU 2.7.11.1 GO:0004672 ... O96013 28993291
    414826 5vee:A (2.5) BS01 981 2.7.11.1 GO:0004672 ... O96013 28993291 MOAD: ic50=779nM
    BindingDB: IC50=779nM
    414827 5vef:A (1.752) BS01 M77 2.7.11.1 GO:0004672 ... O96013 28993291
    414828 5veg:A (1.99) BS01 FMN ? GO:0000166 ... A5VM92 28956602
    414829 5veg:B (1.99) BS01 FMN ? GO:0000166 ... A5VM92 28956602
    414830 5veg:C (1.99) BS01 FMN ? GO:0000166 ... A5VM92 28956602
    414831 5vej:A (1.301) BS01 CO ? GO:0008270 ... Q93LD7 28673485
    414832 5vej:A (1.301) BS02 CO ? GO:0008270 ... Q93LD7 28673485
    414833 5vej:A (1.301) BS03 F ? GO:0008270 ... Q93LD7 28673485
    414834 5vem:A (2.6) BS01 ZN 3.1.-.- GO:0000210 ... Q9UJA9 28898552
    414835 5vem:A (2.6) BS02 ZN 3.1.-.- GO:0000210 ... Q9UJA9 28898552
    414836 5vem:A (2.6) BS03 ZN 3.1.-.- GO:0000210 ... Q9UJA9 28898552
    414837 5vem:B (2.6) BS01 ZN 3.1.-.- GO:0000210 ... Q9UJA9 28898552
    414838 5vem:B (2.6) BS02 ZN 3.1.-.- GO:0000210 ... Q9UJA9 28898552
    414839 5vem:B (2.6) BS03 ZN 3.1.-.- GO:0000210 ... Q9UJA9 28898552
    414840 5vem:C (2.6) BS01 ZN 3.1.-.- GO:0000210 ... Q9UJA9 28898552
    414841 5vem:C (2.6) BS02 ZN 3.1.-.- GO:0000210 ... Q9UJA9 28898552
    414842 5vem:C (2.6) BS03 ZN 3.1.-.- GO:0000210 ... Q9UJA9 28898552
    414843 5ven:A (1.69) BS01 FUC 3.1.-.- GO:0000210 ... Q9EQG7 28898552
    414844 5ven:A (1.69) BS02 ZN 3.1.-.- GO:0000210 ... Q9EQG7 28898552
    414845 5ven:A (1.69) BS03 ZN 3.1.-.- GO:0000210 ... Q9EQG7 28898552
    414846 5ven:A (1.69) BS04 ZN 3.1.-.- GO:0000210 ... Q9EQG7 28898552
    414847 5ven:B (1.69) BS01 FUC 3.1.-.- GO:0000210 ... Q9EQG7 28898552
    414848 5ven:B (1.69) BS02 ZN 3.1.-.- GO:0000210 ... Q9EQG7 28898552
    414849 5ven:B (1.69) BS03 ZN 3.1.-.- GO:0000210 ... Q9EQG7 28898552
    414850 5ven:B (1.69) BS04 ZN 3.1.-.- GO:0000210 ... Q9EQG7 28898552
    414851 5veo:A (1.53) BS01 FUC 3.1.-.- GO:0000210 ... Q9EQG7 28898552
    414852 5veo:A (1.53) BS02 ZN 3.1.-.- GO:0000210 ... Q9EQG7 28898552
    414853 5veo:A (1.53) BS03 ZN 3.1.-.- GO:0000210 ... Q9EQG7 28898552
    414854 5veo:A (1.53) BS04 ZN 3.1.-.- GO:0000210 ... Q9EQG7 28898552
    414855 5veo:A (1.53) BS05 AMP 3.1.-.- GO:0000210 ... Q9EQG7 28898552
    414856 5vep:A (2.59) BS01 CA 2.6.1.63
    2.6.1.7
    4.4.1.13
    GO:0005739 ... Q71RI9 29113027
    414857 5vep:A (2.59) BS02 CA 2.6.1.63
    2.6.1.7
    4.4.1.13
    GO:0005739 ... Q71RI9 29113027
    414858 5veq:A (2.26) BS01 PMP 2.6.1.63
    2.6.1.7
    4.4.1.13
    GO:0005739 ... Q71RI9 29113027
    414859 5veq:A (2.26) BS02 CA 2.6.1.63
    2.6.1.7
    4.4.1.13
    GO:0005739 ... Q71RI9 29113027
    414860 5veq:B (2.26) BS01 PMP 2.6.1.63
    2.6.1.7
    4.4.1.13
    GO:0005739 ... Q71RI9 29113027
    414861 5ver:A (2.81) BS01 PLP 2.6.1.63
    2.6.1.7
    4.4.1.13
    GO:0005739 ... Q71RI9 29113027
    414862 5ver:A (2.81) BS02 CA 2.6.1.63
    2.6.1.7
    4.4.1.13
    GO:0005739 ... Q71RI9 29113027
    414863 5ver:B (2.81) BS01 PMP 2.6.1.63
    2.6.1.7
    4.4.1.13
    GO:0005739 ... Q71RI9 29113027
    414864 5ves:B (2.4) BS01 SO4 ? GO:0009279 ... A0A0F6AZN3 28580643
    414865 5veu:A (2.91) BS01 HEM 1.14.14.1 GO:0002933 ... P20815 29093019
    414866 5veu:A (2.91) BS02 RIT 1.14.14.1 GO:0002933 ... P20815 29093019 BindingDB: Ki=120nM
    414867 5veu:B (2.91) BS01 HEM 1.14.14.1 GO:0002933 ... P20815 29093019
    414868 5veu:B (2.91) BS02 RIT 1.14.14.1 GO:0002933 ... P20815 29093019 BindingDB: Ki=120nM
    414869 5veu:C (2.91) BS01 HEM 1.14.14.1 GO:0002933 ... P20815 29093019
    414870 5veu:D (2.91) BS01 HEM 1.14.14.1 GO:0002933 ... P20815 29093019
    414871 5veu:E (2.91) BS01 HEM 1.14.14.1 GO:0002933 ... P20815 29093019
    414872 5veu:F (2.91) BS01 HEM 1.14.14.1 GO:0002933 ... P20815 29093019
    414873 5veu:G (2.91) BS01 HEM 1.14.14.1 GO:0002933 ... P20815 29093019
    414874 5veu:H (2.91) BS01 HEM 1.14.14.1 GO:0002933 ... P20815 29093019
    414875 5veu:H (2.91) BS02 RIT 1.14.14.1 GO:0002933 ... P20815 29093019 BindingDB: Ki=120nM
    414876 5veu:I (2.91) BS01 HEM 1.14.14.1 GO:0002933 ... P20815 29093019
    414877 5veu:J (2.91) BS01 HEM 1.14.14.1 GO:0002933 ... P20815 29093019
    414878 5veu:K (2.91) BS01 HEM 1.14.14.1 GO:0002933 ... P20815 29093019
    414879 5veu:L (2.91) BS01 HEM 1.14.14.1 GO:0002933 ... P20815 29093019
    414880 5vew:A (2.7) BS01 97Y 3.2.1.17 GO:0003796 ... P00720
    P43220
    28514449
    414881 5vew:B (2.7) BS01 97Y 3.2.1.17 GO:0003796 ... P00720
    P43220
    28514449
    414882 5vex:A (3.0) BS01 97V 3.2.1.17 GO:0003796 ... P00720
    P43220
    28514449
    414883 5vex:B (3.0) BS01 97V 3.2.1.17 GO:0003796 ... P00720
    P43220
    28514449
    414884 5vez:A (2.039) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28449123
    414885 5vez:A (2.039) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28449123
    414886 5vez:A (2.039) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28449123
    414887 5vez:A (2.039) BS04 MG 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28449123
    414888 5vez:A (2.039) BS05 XC5 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28449123
    414889 5vf0:B (-1.00) BS01 ZN 2.3.2.27 GO:0003677 ... Q9NS91 28506460
    414890 5vf2:A (1.55) BS01 GLC N/A N/A N/A 29113027
    414891 5vf3:A (3.3) BS01 peptide ? N/A P04535 28893988
    414892 5vf3:B (3.3) BS01 peptide ? N/A P04535 28893988
    414893 5vf3:C (3.3) BS01 peptide ? N/A P04535 28893988
    414894 5vf4:A (2.81) BS01 CA N/A N/A N/A 30629599
    414895 5vf4:A (2.81) BS02 CA N/A N/A N/A 30629599
    414896 5vf4:B (2.81) BS01 CA N/A N/A N/A 30629599
    414897 5vf4:B (2.81) BS02 CA N/A N/A N/A 30629599
    414898 5vf4:C (2.81) BS01 CA N/A N/A N/A 30629599
    414899 5vf4:C (2.81) BS02 CA N/A N/A N/A 30629599
    414900 5vf4:C (2.81) BS03 CA N/A N/A N/A 30629599
    414901 5vf4:D (2.81) BS01 CA N/A N/A N/A 30629599
    414902 5vf5:A (1.49) BS01 CU ? GO:0046872 ... A0A2R2JFS1 29113027
    414903 5vf9:A (1.82) BS01 MN 1.15.1.1 GO:0000302 ... P04179 28461152
    414904 5vf9:B (1.82) BS01 MN 1.15.1.1 GO:0000302 ... P04179 28461152
    414905 5vfb:A (1.36) BS01 GOA 2.3.3.9 GO:0000287 ... Q9I636 N/A
    414906 5vfb:B (1.36) BS01 GOA 2.3.3.9 GO:0000287 ... Q9I636 N/A
    414907 5vfc:A (1.64) BS01 9BA ? GO:0000122 ... P61964 28603984 MOAD: ic50=0.9nM
    414908 5vfd:A (1.93) BS01 9CP ? GO:0008658 ... Q8RLA6 28665414
    414909 5vfd:A (1.93) BS02 9CM ? GO:0008658 ... Q8RLA6 28665414
    414910 5vfe:A (1.38) BS01 PB ? GO:0016020 ... P46096 30063057
    414911 5vfe:B (1.38) BS01 PB ? GO:0016020 ... P46096 30063057
    414912 5vff:A (1.413) BS01 PB ? GO:0016020 ... P46096 30063057
    414913 5vfg:A (1.82) BS01 PB ? GO:0016020 ... P46096 30063057
    414914 5vfi:A (1.59) BS01 9AJ 2.7.10.2 GO:0004672 ... Q06187 29457982 MOAD: Ki=0.91nM
    BindingDB: IC50=8.0nM, Ki=0.910000nM
    414915 5vfj:A (2.084) BS01 DHC ? GO:0004623 ... Q9IAT9 28751219 MOAD: Kd=20uM
    414916 5vfn:A (2.389) BS01 HCI ? GO:0004623 ... Q9IAT9 28751219
    414917 5vfp:A (4.2) BS01 AGS ? GO:0000502 ... P35998 29636472
    414918 5vfp:A (4.2) BS02 AGS ? GO:0000502 ... P35998 29636472
    414919 5vfp:B (4.2) BS01 AGS ? GO:0005524 ... P62191 29636472
    414920 5vfp:D (4.2) BS01 AGS ? GO:0000502 ... P43686 29636472
    414921 5vfp:E (4.2) BS01 AGS ? GO:0000502 ... P62333 29636472
    414922 5vfp:E (4.2) BS02 AGS ? GO:0000502 ... P62333 29636472
    414923 5vfp:F (4.2) BS01 AGS ? GO:0000502 ... P17980 29636472
    414924 5vfp:F (4.2) BS02 AGS ? GO:0000502 ... P17980 29636472
    414925 5vfp:c (4.2) BS01 ZN 3.4.19.- GO:0000502 ... O00487 29636472
    414926 5vfq:A (4.2) BS01 AGS ? GO:0000502 ... P35998 29636472
    414927 5vfq:B (4.2) BS01 AGS ? GO:0005524 ... P62191 29636472
    414928 5vfq:C (4.2) BS01 AGS ? GO:0000502 ... P62195 29636472
    414929 5vfq:D (4.2) BS01 AGS ? GO:0000502 ... P43686 29636472
    414930 5vfq:D (4.2) BS02 AGS ? GO:0000502 ... P43686 29636472
    414931 5vfq:F (4.2) BS01 AGS ? GO:0000502 ... P17980 29636472
    414932 5vfq:c (4.2) BS01 ZN 3.4.19.- GO:0000502 ... O00487 29636472
    414933 5vfr:A (4.9) BS01 AGS ? GO:0000502 ... P35998 29636472
    414934 5vfr:B (4.9) BS01 AGS ? GO:0005524 ... P62191 29636472
    414935 5vfr:D (4.9) BS01 AGS ? GO:0000502 ... P43686 29636472
    414936 5vfr:E (4.9) BS01 AGS ? GO:0000502 ... P62333 29636472
    414937 5vfr:F (4.9) BS01 AGS ? GO:0000502 ... P17980 29636472
    414938 5vfr:c (4.9) BS01 ZN 3.4.19.- GO:0000502 ... O00487 29636472
    414939 5vfs:A (3.6) BS01 AGS ? GO:0000502 ... P35998 29636472
    414940 5vfs:A (3.6) BS02 AGS ? GO:0000502 ... P35998 29636472
    414941 5vfs:B (3.6) BS01 AGS ? GO:0005524 ... P62191 29636472
    414942 5vfs:C (3.6) BS01 AGS ? GO:0000502 ... P62195 29636472
    414943 5vfs:D (3.6) BS01 AGS ? GO:0000502 ... P43686 29636472
    414944 5vfs:E (3.6) BS01 AGS ? GO:0000502 ... P62333 29636472
    414945 5vfs:E (3.6) BS02 AGS ? GO:0000502 ... P62333 29636472
    414946 5vfs:F (3.6) BS01 AGS ? GO:0000502 ... P17980 29636472
    414947 5vfs:F (3.6) BS02 AGS ? GO:0000502 ... P17980 29636472
    414948 5vfs:c (3.6) BS01 ZN 3.4.19.- GO:0000502 ... O00487 29636472
    414949 5vft:V (7.0) BS01 peptide ? GO:0000502 ... O43242 29636472
    414950 5vft:Y (7.0) BS01 peptide ? GO:0000502 ... Q15008 29636472
    414951 5vfx:A (2.81) BS01 dna ? N/A Q1PLI2 30213934
    414952 5vfx:A (2.81) BS02 dna ? N/A Q1PLI2 30213934
    414953 5vfx:B (2.81) BS01 dna ? N/A Q1PLI2 30213934
    414954 5vfx:B (2.81) BS02 dna ? N/A Q1PLI2 30213934
    414955 5vfx:C (2.81) BS01 dna ? N/A Q1PLI2 30213934
    414956 5vfx:C (2.81) BS02 dna ? N/A Q1PLI2 30213934
    414957 5vfx:D (2.81) BS01 dna ? N/A Q1PLI2 30213934
    414958 5vfx:D (2.81) BS02 dna ? N/A Q1PLI2 30213934
    414959 5vfx:E (2.81) BS01 dna ? N/A Q1PLI2 30213934
    414960 5vfx:E (2.81) BS02 dna ? N/A Q1PLI2 30213934
    414961 5vfx:F (2.81) BS01 dna ? N/A Q1PLI2 30213934
    414962 5vfx:F (2.81) BS02 dna ? N/A Q1PLI2 30213934
    414963 5vfx:G (2.81) BS01 dna ? N/A Q1PLI2 30213934
    414964 5vfx:G (2.81) BS02 dna ? N/A Q1PLI2 30213934
    414965 5vfx:H (2.81) BS01 dna ? N/A Q1PLI2 30213934
    414966 5vfx:H (2.81) BS02 dna ? N/A Q1PLI2 30213934
    414967 5vg0:A (1.1) BS01 CU 3.2.1.14 N/A C7R4I0 28481095
    414968 5vg0:A (1.1) BS02 PER 3.2.1.14 N/A C7R4I0 28481095
    414969 5vg0:B (1.1) BS01 CU 3.2.1.14 N/A C7R4I0 28481095
    414970 5vg0:B (1.1) BS02 PER 3.2.1.14 N/A C7R4I0 28481095
    414971 5vg1:A (2.1) BS01 CU 3.2.1.14 N/A C7R4I0 28481095
    414972 5vg1:B (2.1) BS01 CU 3.2.1.14 N/A C7R4I0 28481095
    414973 5vg1:B (2.1) BS02 PER 3.2.1.14 N/A C7R4I0 28481095
    414974 5vg2:A (2.46) BS01 FE ? GO:0003824 ... T1K8P1 30529144
    414975 5vg2:B (2.46) BS01 FE ? GO:0003824 ... T1K8P1 30529144
    414976 5vg2:C (2.46) BS01 FE ? GO:0003824 ... T1K8P1 30529144
    414977 5vg2:U (2.46) BS01 FE ? GO:0003824 ... T1K8P1 30529144
    414978 5vg3:A (1.451) BS01 MN 4.1.1.2 GO:0005737 ... O34714 N/A
    414979 5vg3:A (1.451) BS02 MN 4.1.1.2 GO:0005737 ... O34714 N/A
    414980 5vg3:B (1.451) BS01 MN 4.1.1.2 GO:0005737 ... O34714 N/A
    414981 5vg3:B (1.451) BS02 MN 4.1.1.2 GO:0005737 ... O34714 N/A
    414982 5vg3:C (1.451) BS01 MN 4.1.1.2 GO:0005737 ... O34714 N/A
    414983 5vg3:C (1.451) BS02 MN 4.1.1.2 GO:0005737 ... O34714 N/A
    414984 5vg6:A (2.2) BS01 NDP ? GO:0000166 ... A7IIH0 N/A
    414985 5vg6:B (2.2) BS01 NDP ? GO:0000166 ... A7IIH0 N/A
    414986 5vg6:C (2.2) BS01 NDP ? GO:0000166 ... A7IIH0 N/A
    414987 5vg6:D (2.2) BS01 NDP ? GO:0000166 ... A7IIH0 N/A
    414988 5vg6:E (2.2) BS01 NDP ? GO:0000166 ... A7IIH0 N/A
    414989 5vg6:F (2.2) BS01 NDP ? GO:0000166 ... A7IIH0 N/A
    414990 5vg6:G (2.2) BS01 NDP ? GO:0000166 ... A7IIH0 N/A
    414991 5vg6:H (2.2) BS01 NDP ? GO:0000166 ... A7IIH0 N/A
    414992 5vg6:I (2.2) BS01 NDP ? GO:0000166 ... A7IIH0 N/A
    414993 5vg6:J (2.2) BS01 NDP ? GO:0000166 ... A7IIH0 N/A
    414994 5vg7:A (1.95) BS01 MG 5.4.2.2 GO:0000287 ... P36871 30122451
    414995 5vg7:B (1.95) BS01 MG 5.4.2.2 GO:0000287 ... P36871 30122451
    414996 5vg9:A (4.0) BS01 SAH 2.1.1.100 GO:0004671 ... D6WJ77 29342140
    414997 5vgc:A (2.6) BS01 CA ? GO:0004842 ... B6DZC0 N/A
    414998 5vgc:A (2.6) BS02 CA ? GO:0004842 ... B6DZC0 N/A
    414999 5vgc:A (2.6) BS03 CA ? GO:0004842 ... B6DZC0 N/A
    415000 5vgc:B (2.6) BS01 CA ? GO:0004842 ... B6DZC0 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).