SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    424801 5xfq:A (2.4) BS05 ZN ? N/A Q9Z1B8 28869966
    424802 5xfq:A (2.4) BS06 ZN ? N/A Q9Z1B8 28869966
    424803 5xfq:A (2.4) BS07 ZN ? N/A Q9Z1B8 28869966
    424804 5xfq:B (2.4) BS01 peptide ? N/A Q9Z1B8 28869966
    424805 5xfq:B (2.4) BS02 ZN ? N/A Q9Z1B8 28869966
    424806 5xfq:B (2.4) BS03 ZN ? N/A Q9Z1B8 28869966
    424807 5xfq:B (2.4) BS04 ZN ? N/A Q9Z1B8 28869966
    424808 5xfq:B (2.4) BS05 ZN ? N/A Q9Z1B8 28869966
    424809 5xfr:A (2.25) BS01 peptide ? N/A Q9Y483 28869966
    424810 5xfr:A (2.25) BS02 ZN ? N/A Q9Y483 28869966
    424811 5xfr:A (2.25) BS03 ZN ? N/A Q9Y483 28869966
    424812 5xfr:A (2.25) BS04 ZN ? N/A Q9Y483 28869966
    424813 5xfr:A (2.25) BS05 ZN ? N/A Q9Y483 28869966
    424814 5xfr:B (2.25) BS01 peptide ? N/A Q9Y483 28869966
    424815 5xfr:B (2.25) BS02 dna ? N/A Q9Y483 28869966
    424816 5xfr:B (2.25) BS03 dna ? N/A Q9Y483 28869966
    424817 5xfr:B (2.25) BS04 ZN ? N/A Q9Y483 28869966
    424818 5xfr:B (2.25) BS05 ZN ? N/A Q9Y483 28869966
    424819 5xfr:B (2.25) BS06 ZN ? N/A Q9Y483 28869966
    424820 5xfr:B (2.25) BS07 ZN ? N/A Q9Y483 28869966
    424821 5xfv:A (1.79) BS01 FMN 1.3.98.1 GO:0004152 ... Q57U83 29632820 MOAD: Kd=0.000000012uM
    424822 5xfv:B (1.79) BS01 FMN 1.3.98.1 GO:0004152 ... Q57U83 29632820 MOAD: Kd=0.000000012uM
    424823 5xfv:C (1.79) BS01 FMN 1.3.98.1 GO:0004152 ... Q57U83 29632820 MOAD: Kd=0.000000012uM
    424824 5xfv:D (1.79) BS01 FMN 1.3.98.1 GO:0004152 ... Q57U83 29632820 MOAD: Kd=0.000000012uM
    424825 5xg3:A (3.5) BS01 AGS ? N/A P51834 28689660
    424826 5xg3:A (3.5) BS02 MG ? N/A P51834 28689660
    424827 5xg3:A (3.5) BS03 CO ? N/A P51834 28689660
    424828 5xg3:A (3.5) BS04 AGS ? N/A P51834 28689660
    424829 5xg3:B (3.5) BS01 AGS ? N/A P51834 28689660
    424830 5xg3:B (3.5) BS02 AGS ? N/A P51834 28689660
    424831 5xg3:B (3.5) BS03 MG ? N/A P51834 28689660
    424832 5xg4:U (3.0) BS01 QUE 3.4.21.73 GO:0004252 ... P00749 28644504 BindingDB: IC50=20000nM
    424833 5xg8:A (1.55) BS01 GOL ? GO:0004622 ... Q9UHV8 29343868
    424834 5xga:A (1.951) BS01 CPS 2.7.13.3 N/A P0AEJ4 28423182
    424835 5xga:A (1.951) BS02 CPS 2.7.13.3 N/A P0AEJ4 28423182
    424836 5xgd:A (2.8) BS01 GTP ? GO:0006355 ... Q9I580 29109186
    424837 5xgd:A (2.8) BS02 MG ? GO:0006355 ... Q9I580 29109186
    424838 5xge:A (3.31) BS01 C2E ? GO:0006355 ... Q9I580 29109186
    424839 5xgh:A (2.97) BS01 84U 2.7.11.1
    2.7.1.137
    2.7.1.153
    GO:0001525 ... P42336 29109464
    424840 5xgi:A (2.56) BS01 84R 2.7.11.1
    2.7.1.137
    2.7.1.153
    GO:0001525 ... P42336 N/A
    424841 5xgj:A (2.97) BS01 84X 2.7.11.1
    2.7.1.137
    2.7.1.153
    GO:0001525 ... P42336 N/A
    424842 5xgk:A (2.8) BS01 TYF 1.13.11.27 GO:0003868 ... P93836 31549053
    424843 5xgk:A (2.8) BS02 FE 1.13.11.27 GO:0003868 ... P93836 31549053
    424844 5xgk:B (2.8) BS01 FE 1.13.11.27 GO:0003868 ... P93836 31549053
    424845 5xgk:C (2.8) BS01 FE 1.13.11.27 GO:0003868 ... P93836 31549053
    424846 5xgk:D (2.8) BS01 FE 1.13.11.27 GO:0003868 ... P93836 31549053
    424847 5xgl:A (3.439) BS01 peptide ? GO:0004888 ... Q8WSF8 28585176
    424848 5xgl:A (3.439) BS02 peptide ? GO:0004888 ... Q8WSF8 28585176
    424849 5xgl:B (3.439) BS01 peptide ? GO:0004888 ... Q8WSF8 28585176
    424850 5xgl:B (3.439) BS02 peptide ? GO:0004888 ... Q8WSF8 28585176
    424851 5xgl:D (3.439) BS01 peptide ? GO:0004888 ... Q8WSF8 28585176
    424852 5xgl:D (3.439) BS02 peptide ? GO:0004888 ... Q8WSF8 28585176
    424853 5xgl:G (3.439) BS01 peptide ? GO:0004888 ... Q8WSF8 28585176
    424854 5xgl:G (3.439) BS02 peptide ? GO:0004888 ... Q8WSF8 28585176
    424855 5xgl:I (3.439) BS01 peptide ? GO:0004888 ... Q8WSF8 28585176
    424856 5xgl:I (3.439) BS02 peptide ? GO:0004888 ... Q8WSF8 28585176
    424857 5xgm:A (2.952) BS01 85X 2.7.10.1 GO:0004672 ... P00533 28456628
    424858 5xgn:A (3.0) BS01 85X 2.7.10.1 GO:0004672 ... P00533 28456628
    424859 5xgu:A (1.846) BS01 MG N/A GO:0003676 ... N/A 29036353
    424860 5xgu:B (1.846) BS01 MG N/A GO:0003676 ... N/A 29036353
    424861 5xgv:A (2.099) BS01 FAD 5.5.1.- GO:0016491 ... K7QRJ5 29657086
    424862 5xgv:B (2.099) BS01 FAD 5.5.1.- GO:0016491 ... K7QRJ5 29657086
    424863 5xgw:A (1.85) BS01 ZN 3.4.19.- GO:0005737 ... Q484B6 28723955
    424864 5xgw:A (1.85) BS02 ZN 3.4.19.- GO:0005737 ... Q484B6 28723955
    424865 5xgw:B (1.85) BS01 ZN 3.4.19.- GO:0005737 ... Q484B6 28723955
    424866 5xgw:B (1.85) BS02 ZN 3.4.19.- GO:0005737 ... Q484B6 28723955
    424867 5xgx:A (2.33) BS01 ZN 3.4.19.- GO:0005737 ... Q484B6 28723955
    424868 5xgx:A (2.33) BS02 ZN 3.4.19.- GO:0005737 ... Q484B6 28723955
    424869 5xgx:A (2.33) BS03 DAS 3.4.19.- GO:0005737 ... Q484B6 28723955
    424870 5xgx:A (2.33) BS04 DLY 3.4.19.- GO:0005737 ... Q484B6 28723955
    424871 5xgx:B (2.33) BS01 ZN 3.4.19.- GO:0005737 ... Q484B6 28723955
    424872 5xgx:B (2.33) BS02 ZN 3.4.19.- GO:0005737 ... Q484B6 28723955
    424873 5xgx:B (2.33) BS03 DAS 3.4.19.- GO:0005737 ... Q484B6 28723955
    424874 5xgx:B (2.33) BS04 DLY 3.4.19.- GO:0005737 ... Q484B6 28723955
    424875 5xh2:A (1.2) BS01 NPO 3.1.1.101 GO:0005576 ... A0A0K8P6T7 29235460
    424876 5xh3:A (1.3) BS01 856 3.1.1.101 GO:0005576 ... A0A0K8P6T7 29235460
    424877 5xh6:A (2.0) BS01 rna 3.1.21.1
    4.6.1.22
    GO:0003677 ... U2UMQ6 28595896
    424878 5xh6:A (2.0) BS02 dna 3.1.21.1
    4.6.1.22
    GO:0003677 ... U2UMQ6 28595896
    424879 5xh6:A (2.0) BS03 dna 3.1.21.1
    4.6.1.22
    GO:0003677 ... U2UMQ6 28595896
    424880 5xh7:A (2.0) BS01 rna 3.1.21.1
    4.6.1.22
    GO:0003677 ... U2UMQ6 28595896
    424881 5xh7:A (2.0) BS02 dna 3.1.21.1
    4.6.1.22
    GO:0003677 ... U2UMQ6 28595896
    424882 5xh7:A (2.0) BS03 dna 3.1.21.1
    4.6.1.22
    GO:0003677 ... U2UMQ6 28595896
    424883 5xha:A (2.1) BS01 FRU N/A GO:0004553 ... N/A 28715279
    424884 5xha:A (2.1) BS02 FRU N/A GO:0004553 ... N/A 28715279
    424885 5xha:A (2.1) BS03 FRU N/A GO:0004553 ... N/A 28715279
    424886 5xha:A (2.1) BS04 FRU N/A GO:0004553 ... N/A 28715279
    424887 5xhb:A (1.9) BS01 SO4 ? GO:0005886 ... P42708 29311076
    424888 5xhc:A (2.75) BS01 GTP ? GO:0005200 ... A0A0R4I993 N/A
    424889 5xhc:A (2.75) BS02 CA ? GO:0005200 ... A0A0R4I993 N/A
    424890 5xhc:B (2.75) BS01 GDP ? GO:0003924 ... A0A0R4I995 N/A
    424891 5xhc:B (2.75) BS02 87U ? GO:0003924 ... A0A0R4I995 N/A
    424892 5xhc:C (2.75) BS01 GTP ? GO:0005200 ... A0A0R4I993 N/A
    424893 5xhc:C (2.75) BS02 CA ? GO:0005200 ... A0A0R4I993 N/A
    424894 5xhc:D (2.75) BS01 GTP ? GO:0003924 ... A0A0R4I995 N/A
    424895 5xhc:F (2.75) BS01 ACP N/A GO:0036211 ... N/A N/A
    424896 5xhg:A (1.76) BS01 OAZ N/A N/A N/A 28727448
    424897 5xhi:A (1.26) BS01 MG 1.16.3.1 GO:0004322 ... P07798 28739445
    424898 5xhi:A (1.26) BS02 MG 1.16.3.1 GO:0004322 ... P07798 28739445
    424899 5xhj:A (2.0) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    424900 5xhj:A (2.0) BS02 TRP 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    424901 5xhj:A (2.0) BS03 87X 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    424902 5xhj:B (2.0) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    424903 5xhj:B (2.0) BS02 TRP 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    424904 5xhj:B (2.0) BS03 87X 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    424905 5xhk:A (1.28) BS01 LDR ? N/A P25440 28696179
    424906 5xhl:A (2.5) BS01 VPC ? GO:0046872 ... G3XD33 N/A
    424907 5xhl:B (2.5) BS01 VPC ? GO:0046872 ... G3XD33 N/A
    424908 5xhm:A (1.7) BS01 MG 1.16.3.1 GO:0004322 ... P07798 28739445
    424909 5xhm:A (1.7) BS02 MG 1.16.3.1 GO:0004322 ... P07798 28739445
    424910 5xhn:A (1.63) BS01 MG 1.16.3.1 GO:0004322 ... P07798 28739445
    424911 5xhn:A (1.63) BS02 MG 1.16.3.1 GO:0004322 ... P07798 28739445
    424912 5xhn:A (1.63) BS03 MG 1.16.3.1 GO:0004322 ... P07798 28739445
    424913 5xho:A (1.73) BS01 MG 1.16.3.1 GO:0004322 ... P07798 28739445
    424914 5xho:A (1.73) BS02 MG 1.16.3.1 GO:0004322 ... P07798 28739445
    424915 5xho:A (1.73) BS03 MG 1.16.3.1 GO:0004322 ... P07798 28739445
    424916 5xhp:E (2.8) BS01 ARG ? GO:0000166 ... E8XCX6 N/A
    424917 5xhp:E (2.8) BS02 MN ? GO:0000166 ... E8XCX6 N/A
    424918 5xhp:E (2.8) BS03 UDP ? GO:0000166 ... E8XCX6 N/A
    424919 5xhp:F (2.8) BS01 ARG ? GO:0000166 ... E8XCX6 N/A
    424920 5xhp:F (2.8) BS02 MN ? GO:0000166 ... E8XCX6 N/A
    424921 5xhp:F (2.8) BS03 UDP ? GO:0000166 ... E8XCX6 N/A
    424922 5xhr:A (1.8) BS01 PXH 3.5.2.6 GO:0008800 ... P05364 28971874
    424923 5xhs:A (2.19) BS01 SLL 2.3.1.- GO:0036054 ... Q9NXA8 N/A
    424924 5xhs:A (2.19) BS02 MCM 2.3.1.- GO:0036054 ... Q9NXA8 N/A
    424925 5xhs:A (2.19) BS03 ZN 2.3.1.- GO:0036054 ... Q9NXA8 N/A
    424926 5xht:A (-1.00) BS01 ZN ? N/A Q9UPV7 29430827
    424927 5xht:A (-1.00) BS02 ZN ? N/A Q9UPV7 29430827
    424928 5xhu:A (2.1) BS01 FAD 1.18.1.2 GO:0004324 ... O31475 N/A
    424929 5xhy:A (1.976) BS01 8FC ? N/A O60885 N/A
    424930 5xhz:A (1.319) BS01 peptide ? N/A Q8R550 29589748
    424931 5xhz:B (1.319) BS01 peptide ? N/A Q8R550 29589748
    424932 5xhz:B (1.319) BS02 peptide ? N/A Q8R550 29589748
    424933 5xi2:A (1.909) BS01 8F9 ? N/A O60885 N/A BindingDB: IC50=52nM
    424934 5xi3:A (1.674) BS01 8F6 ? N/A O60885 N/A BindingDB: IC50=340nM
    424935 5xi4:A (1.486) BS01 8F0 ? N/A O60885 N/A BindingDB: IC50=170nM
    424936 5xi5:A (2.81) BS01 GTP ? GO:0005200 ... A0A0R4I993 N/A
    424937 5xi5:A (2.81) BS02 CA ? GO:0005200 ... A0A0R4I993 N/A
    424938 5xi5:B (2.81) BS01 GDP ? GO:0003924 ... A0A0R4I995 N/A
    424939 5xi5:B (2.81) BS02 PN6 ? GO:0003924 ... A0A0R4I995 N/A
    424940 5xi5:C (2.81) BS01 GTP ? GO:0005200 ... A0A0R4I993 N/A
    424941 5xi5:C (2.81) BS02 CA ? GO:0005200 ... A0A0R4I993 N/A
    424942 5xi5:D (2.81) BS01 GTP ? GO:0003924 ... A0A0R4I995 N/A
    424943 5xi5:D (2.81) BS02 PN6 ? GO:0003924 ... A0A0R4I995 N/A
    424944 5xi5:F (2.81) BS01 ACP N/A GO:0036211 ... N/A N/A
    424945 5xi7:A (2.99) BS01 GTP ? GO:0005200 ... A0A0R4I993 N/A
    424946 5xi7:A (2.99) BS02 CA ? GO:0005200 ... A0A0R4I993 N/A
    424947 5xi7:B (2.99) BS01 GDP ? GO:0003924 ... A0A0R4I995 N/A
    424948 5xi7:B (2.99) BS02 PO7 ? GO:0003924 ... A0A0R4I995 N/A
    424949 5xi7:C (2.99) BS01 GTP ? GO:0005200 ... A0A0R4I993 N/A
    424950 5xi7:C (2.99) BS02 CA ? GO:0005200 ... A0A0R4I993 N/A
    424951 5xi7:D (2.99) BS01 GTP ? GO:0003924 ... A0A0R4I995 N/A
    424952 5xi7:D (2.99) BS02 PO7 ? GO:0003924 ... A0A0R4I995 N/A
    424953 5xi7:F (2.99) BS01 ACP N/A GO:0036211 ... N/A N/A
    424954 5xia:A (2.5) BS01 XYL 5.3.1.5 GO:0000287 ... P12070 2769749
    424955 5xia:A (2.5) BS02 MG 5.3.1.5 GO:0000287 ... P12070 2769749
    424956 5xia:B (2.5) BS01 XYL 5.3.1.5 GO:0000287 ... P12070 2769749
    424957 5xia:B (2.5) BS02 MG 5.3.1.5 GO:0000287 ... P12070 2769749
    424958 5xib:A (2.3) BS01 WUP ? GO:0046872 ... G3XD33 28921809
    424959 5xib:B (2.3) BS01 WUP ? GO:0046872 ... G3XD33 28921809
    424960 5xic:A (1.45) BS01 WXP ? GO:0046872 ... G3XD33 28921809
    424961 5xic:B (1.45) BS01 WXP ? GO:0046872 ... G3XD33 28921809
    424962 5xic:C (1.45) BS01 WXP ? GO:0046872 ... G3XD33 28921809
    424963 5xic:D (1.45) BS01 WXP ? GO:0046872 ... G3XD33 28921809
    424964 5xie:A (2.05) BS01 WYP ? GO:0046872 ... G3XD33 28921809
    424965 5xie:B (2.05) BS01 WYP ? GO:0046872 ... G3XD33 28921809
    424966 5xig:A (2.41) BS01 ANP 6.1.1.15 GO:0000166 ... S8G8I1 28867614
    424967 5xig:A (2.41) BS02 87F 6.1.1.15 GO:0000166 ... S8G8I1 28867614 MOAD: ic50=350nM
    424968 5xig:B (2.41) BS01 ANP 6.1.1.15 GO:0000166 ... S8G8I1 28867614
    424969 5xig:B (2.41) BS02 87F 6.1.1.15 GO:0000166 ... S8G8I1 28867614 MOAD: ic50=350nM
    424970 5xig:C (2.41) BS01 ANP 6.1.1.15 GO:0000166 ... S8G8I1 28867614
    424971 5xig:C (2.41) BS02 87F 6.1.1.15 GO:0000166 ... S8G8I1 28867614 MOAD: ic50=350nM
    424972 5xig:D (2.41) BS01 ANP 6.1.1.15 GO:0000166 ... S8G8I1 28867614
    424973 5xig:D (2.41) BS02 87F 6.1.1.15 GO:0000166 ... S8G8I1 28867614 MOAD: ic50=350nM
    424974 5xih:A (2.2) BS01 ANP 6.1.1.15 GO:0000166 ... S8G8I1 28867614
    424975 5xih:A (2.2) BS02 86U 6.1.1.15 GO:0000166 ... S8G8I1 28867614 MOAD: ic50=68nM
    424976 5xih:B (2.2) BS01 ANP 6.1.1.15 GO:0000166 ... S8G8I1 28867614
    424977 5xih:B (2.2) BS02 86U 6.1.1.15 GO:0000166 ... S8G8I1 28867614 MOAD: ic50=68nM
    424978 5xih:C (2.2) BS01 ANP 6.1.1.15 GO:0000166 ... S8G8I1 28867614
    424979 5xih:C (2.2) BS02 86U 6.1.1.15 GO:0000166 ... S8G8I1 28867614 MOAD: ic50=68nM
    424980 5xih:D (2.2) BS01 ANP 6.1.1.15 GO:0000166 ... S8G8I1 28867614
    424981 5xih:D (2.2) BS02 86U 6.1.1.15 GO:0000166 ... S8G8I1 28867614 MOAD: ic50=68nM
    424982 5xii:A (2.17) BS01 ANP 6.1.1.15 GO:0000166 ... S8G8I1 28867614
    424983 5xii:A (2.17) BS02 86X 6.1.1.15 GO:0000166 ... S8G8I1 28867614 MOAD: ic50=72nM
    424984 5xii:B (2.17) BS01 ANP 6.1.1.15 GO:0000166 ... S8G8I1 28867614
    424985 5xii:B (2.17) BS02 86X 6.1.1.15 GO:0000166 ... S8G8I1 28867614 MOAD: ic50=72nM
    424986 5xii:C (2.17) BS01 ANP 6.1.1.15 GO:0000166 ... S8G8I1 28867614
    424987 5xii:C (2.17) BS02 86X 6.1.1.15 GO:0000166 ... S8G8I1 28867614 MOAD: ic50=72nM
    424988 5xii:D (2.17) BS01 ANP 6.1.1.15 GO:0000166 ... S8G8I1 28867614
    424989 5xii:D (2.17) BS02 86X 6.1.1.15 GO:0000166 ... S8G8I1 28867614 MOAD: ic50=72nM
    424990 5xij:A (2.5) BS01 ANP 6.1.1.15 GO:0000166 ... S8G8I1 28867614
    424991 5xij:A (2.5) BS02 873 6.1.1.15 GO:0000166 ... S8G8I1 28867614 MOAD: ic50=67nM
    424992 5xij:B (2.5) BS01 ANP 6.1.1.15 GO:0000166 ... S8G8I1 28867614
    424993 5xij:B (2.5) BS02 873 6.1.1.15 GO:0000166 ... S8G8I1 28867614 MOAD: ic50=67nM
    424994 5xij:C (2.5) BS01 ANP 6.1.1.15 GO:0000166 ... S8G8I1 28867614
    424995 5xij:C (2.5) BS02 873 6.1.1.15 GO:0000166 ... S8G8I1 28867614 MOAD: ic50=67nM
    424996 5xij:D (2.5) BS01 ANP 6.1.1.15 GO:0000166 ... S8G8I1 28867614
    424997 5xij:D (2.5) BS02 873 6.1.1.15 GO:0000166 ... S8G8I1 28867614 MOAD: ic50=67nM
    424998 5xik:A (2.5) BS01 ANP 6.1.1.15 GO:0000166 ... S8G8I1 28867614
    424999 5xik:A (2.5) BS02 87C 6.1.1.15 GO:0000166 ... S8G8I1 28867614
    425000 5xik:B (2.5) BS01 ANP 6.1.1.15 GO:0000166 ... S8G8I1 28867614

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).