SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    427401 5xvc:T (2.05) BS03 8JU 1.12.99.6 GO:0008901 ... A0A3B6UEQ0 30328414
    427402 5xvd:L (1.57) BS01 MG 1.12.99.6 GO:0008901 ... A0A3B6UEQ1 30328414
    427403 5xvd:L (1.57) BS02 NFV 1.12.99.6 GO:0008901 ... A0A3B6UEQ1 30328414
    427404 5xvd:M (1.57) BS01 MG 1.12.99.6 GO:0008901 ... A0A3B6UEQ1 30328414
    427405 5xvd:M (1.57) BS02 NFV 1.12.99.6 GO:0008901 ... A0A3B6UEQ1 30328414
    427406 5xvd:S (1.57) BS01 SF4 1.12.99.6 GO:0008901 ... A0A0J1PJ79 30328414
    427407 5xvd:S (1.57) BS02 F3S 1.12.99.6 GO:0008901 ... A0A0J1PJ79 30328414
    427408 5xvd:S (1.57) BS03 SF4 1.12.99.6 GO:0008901 ... A0A0J1PJ79 30328414
    427409 5xvd:S (1.57) BS04 8JU 1.12.99.6 GO:0008901 ... A0A0J1PJ79 30328414
    427410 5xvd:T (1.57) BS01 SF4 1.12.99.6 GO:0008901 ... A0A0J1PJ79 30328414
    427411 5xvd:T (1.57) BS02 F3S 1.12.99.6 GO:0008901 ... A0A0J1PJ79 30328414
    427412 5xvd:T (1.57) BS03 SF4 1.12.99.6 GO:0008901 ... A0A0J1PJ79 30328414
    427413 5xvd:T (1.57) BS04 8JU 1.12.99.6 GO:0008901 ... A0A0J1PJ79 30328414
    427414 5xve:A (1.24) BS01 ZN 3.4.19.12 GO:0004843 ... O75604 29449607
    427415 5xvf:A (2.655) BS01 8FR 2.7.11.1 GO:0004672 ... O96013 29190083 BindingDB: Kd=156nM, Ki=710nM
    427416 5xvg:A (2.1) BS01 8FX 2.7.11.1 GO:0004672 ... O96013 29190083 MOAD: Ki=0.009uM
    BindingDB: IC50=11nM, Ki=9nM
    427417 5xvh:A (1.57) BS01 NAP ? GO:0000166 ... A3MU08 29353380
    427418 5xvh:A (1.57) BS02 SO4 ? GO:0000166 ... A3MU08 29353380
    427419 5xvk:A (1.88) BS01 SAH 2.1.1.1 GO:0005737 ... O55239 28720493
    427420 5xvk:A (1.88) BS02 8GC 2.1.1.1 GO:0005737 ... O55239 28720493 MOAD: ic50=9uM
    427421 5xvk:B (1.88) BS01 SAH 2.1.1.1 GO:0005737 ... O55239 28720493
    427422 5xvk:B (1.88) BS02 8GC 2.1.1.1 GO:0005737 ... O55239 28720493 MOAD: ic50=9uM
    427423 5xvn:A (3.25) BS01 dna N/A GO:0003676 ... N/A 28869593
    427424 5xvn:B (3.25) BS01 dna N/A GO:0003676 ... N/A 28869593
    427425 5xvn:C (3.25) BS01 dna N/A GO:0003676 ... N/A 28869593
    427426 5xvn:C (3.25) BS02 dna N/A GO:0003676 ... N/A 28869593
    427427 5xvn:D (3.25) BS01 dna N/A GO:0003676 ... N/A 28869593
    427428 5xvn:E (3.25) BS01 dna N/A GO:0004521 ... N/A 28869593
    427429 5xvn:E (3.25) BS02 dna N/A GO:0004521 ... N/A 28869593
    427430 5xvn:E (3.25) BS03 MG N/A GO:0004521 ... N/A 28869593
    427431 5xvn:F (3.25) BS01 dna N/A GO:0004521 ... N/A 28869593
    427432 5xvn:F (3.25) BS02 dna N/A GO:0004521 ... N/A 28869593
    427433 5xvn:F (3.25) BS03 MG N/A GO:0004521 ... N/A 28869593
    427434 5xvn:I (3.25) BS01 dna N/A GO:0003676 ... N/A 28869593
    427435 5xvn:I (3.25) BS02 dna N/A GO:0003676 ... N/A 28869593
    427436 5xvn:J (3.25) BS01 dna N/A GO:0003676 ... N/A 28869593
    427437 5xvn:K (3.25) BS01 dna N/A GO:0003676 ... N/A 28869593
    427438 5xvn:K (3.25) BS02 dna N/A GO:0003676 ... N/A 28869593
    427439 5xvn:L (3.25) BS01 dna N/A GO:0003676 ... N/A 28869593
    427440 5xvn:M (3.25) BS01 dna N/A GO:0004521 ... N/A 28869593
    427441 5xvn:M (3.25) BS02 dna N/A GO:0004521 ... N/A 28869593
    427442 5xvn:M (3.25) BS03 MG N/A GO:0004521 ... N/A 28869593
    427443 5xvn:N (3.25) BS01 dna N/A GO:0004521 ... N/A 28869593
    427444 5xvn:N (3.25) BS02 dna N/A GO:0004521 ... N/A 28869593
    427445 5xvn:N (3.25) BS03 MG N/A GO:0004521 ... N/A 28869593
    427446 5xvo:A (3.1) BS01 dna N/A GO:0003676 ... N/A 28869593
    427447 5xvo:A (3.1) BS02 dna N/A GO:0003676 ... N/A 28869593
    427448 5xvo:A (3.1) BS03 dna N/A GO:0003676 ... N/A 28869593
    427449 5xvo:B (3.1) BS01 dna N/A GO:0003676 ... N/A 28869593
    427450 5xvo:B (3.1) BS02 dna N/A GO:0003676 ... N/A 28869593
    427451 5xvo:B (3.1) BS03 dna N/A GO:0003676 ... N/A 28869593
    427452 5xvo:B (3.1) BS04 dna N/A GO:0003676 ... N/A 28869593
    427453 5xvo:C (3.1) BS01 dna N/A GO:0003676 ... N/A 28869593
    427454 5xvo:C (3.1) BS02 dna N/A GO:0003676 ... N/A 28869593
    427455 5xvo:D (3.1) BS01 dna N/A GO:0003676 ... N/A 28869593
    427456 5xvo:D (3.1) BS02 dna N/A GO:0003676 ... N/A 28869593
    427457 5xvo:E (3.1) BS01 dna N/A GO:0004521 ... N/A 28869593
    427458 5xvo:E (3.1) BS02 dna N/A GO:0004521 ... N/A 28869593
    427459 5xvo:E (3.1) BS03 dna N/A GO:0004521 ... N/A 28869593
    427460 5xvo:E (3.1) BS04 MG N/A GO:0004521 ... N/A 28869593
    427461 5xvo:F (3.1) BS01 dna N/A GO:0004521 ... N/A 28869593
    427462 5xvo:F (3.1) BS02 dna N/A GO:0004521 ... N/A 28869593
    427463 5xvo:F (3.1) BS03 MG N/A GO:0004521 ... N/A 28869593
    427464 5xvo:I (3.1) BS01 dna N/A GO:0003676 ... N/A 28869593
    427465 5xvo:I (3.1) BS02 dna N/A GO:0003676 ... N/A 28869593
    427466 5xvo:J (3.1) BS01 dna N/A GO:0003676 ... N/A 28869593
    427467 5xvo:K (3.1) BS01 dna N/A GO:0003676 ... N/A 28869593
    427468 5xvo:K (3.1) BS02 dna N/A GO:0003676 ... N/A 28869593
    427469 5xvo:L (3.1) BS01 dna N/A GO:0003676 ... N/A 28869593
    427470 5xvo:L (3.1) BS02 dna N/A GO:0003676 ... N/A 28869593
    427471 5xvo:M (3.1) BS01 dna N/A GO:0004521 ... N/A 28869593
    427472 5xvo:M (3.1) BS02 dna N/A GO:0004521 ... N/A 28869593
    427473 5xvo:M (3.1) BS03 dna N/A GO:0004521 ... N/A 28869593
    427474 5xvo:M (3.1) BS04 MG N/A GO:0004521 ... N/A 28869593
    427475 5xvo:N (3.1) BS01 dna N/A GO:0004521 ... N/A 28869593
    427476 5xvo:N (3.1) BS02 dna N/A GO:0004521 ... N/A 28869593
    427477 5xvo:N (3.1) BS03 dna N/A GO:0004521 ... N/A 28869593
    427478 5xvo:N (3.1) BS04 MG N/A GO:0004521 ... N/A 28869593
    427479 5xvp:A (3.0) BS01 dna N/A GO:0003676 ... N/A 28869593
    427480 5xvp:A (3.0) BS02 dna N/A GO:0003676 ... N/A 28869593
    427481 5xvp:B (3.0) BS01 dna N/A GO:0003676 ... N/A 28869593
    427482 5xvp:B (3.0) BS02 dna N/A GO:0003676 ... N/A 28869593
    427483 5xvp:B (3.0) BS03 dna N/A GO:0003676 ... N/A 28869593
    427484 5xvp:C (3.0) BS01 dna N/A GO:0003676 ... N/A 28869593
    427485 5xvp:C (3.0) BS02 dna N/A GO:0003676 ... N/A 28869593
    427486 5xvp:D (3.0) BS01 dna N/A GO:0003676 ... N/A 28869593
    427487 5xvp:D (3.0) BS02 dna N/A GO:0003676 ... N/A 28869593
    427488 5xvp:D (3.0) BS03 dna N/A GO:0003676 ... N/A 28869593
    427489 5xvp:E (3.0) BS01 dna N/A GO:0004521 ... N/A 28869593
    427490 5xvp:E (3.0) BS02 dna N/A GO:0004521 ... N/A 28869593
    427491 5xvp:E (3.0) BS03 MG N/A GO:0004521 ... N/A 28869593
    427492 5xvp:F (3.0) BS01 dna N/A GO:0004521 ... N/A 28869593
    427493 5xvp:F (3.0) BS02 dna N/A GO:0004521 ... N/A 28869593
    427494 5xvp:F (3.0) BS03 MG N/A GO:0004521 ... N/A 28869593
    427495 5xvq:A (2.29) BS01 SAH ? GO:0005829 ... F7ERX8 28720493
    427496 5xvq:A (2.29) BS02 8GC ? GO:0005829 ... F7ERX8 28720493 MOAD: ic50=9uM
    427497 5xvq:B (2.29) BS01 SAH ? GO:0005829 ... F7ERX8 28720493
    427498 5xvq:B (2.29) BS02 8GC ? GO:0005829 ... F7ERX8 28720493 MOAD: ic50=9uM
    427499 5xvr:A (1.63) BS01 TRH 2.4.1.- GO:0016757 ... E6MVV9 29440735
    427500 5xvr:B (1.63) BS01 TRH 2.4.1.- GO:0016757 ... E6MVV9 29440735
    427501 5xvs:A (2.383) BS01 UDP 3.2.1.183 GO:0000166 ... A0A154EJU5 29764940
    427502 5xvs:B (2.383) BS01 UDP 3.2.1.183 GO:0000166 ... A0A154EJU5 29764940
    427503 5xvt:A (0.85) BS01 CA 2.2.1.1 GO:0004802 ... P34736 29243887
    427504 5xvt:A (0.85) BS02 8FL 2.2.1.1 GO:0004802 ... P34736 29243887
    427505 5xvu:A (3.0) BS01 ATP 2.7.11.1 GO:0004672 ... Q8IIR9 29743645
    427506 5xvu:B (3.0) BS01 ATP 2.7.11.1 GO:0004672 ... Q8IIR9 29743645
    427507 5xvu:C (3.0) BS01 ATP 2.7.11.1 GO:0004672 ... Q8IIR9 29743645
    427508 5xvv:A (2.25) BS01 AKG 1.4.1.4 GO:0000166 ... B6V7E4 29540480
    427509 5xvv:B (2.25) BS01 AKG 1.4.1.4 GO:0000166 ... B6V7E4 29540480
    427510 5xvv:C (2.25) BS01 AKG 1.4.1.4 GO:0000166 ... B6V7E4 29540480
    427511 5xvw:A (1.849) BS01 peptide ? GO:0006355 ... Q9SRM4 30176245
    427512 5xvw:B (1.849) BS01 peptide ? GO:0006355 ... Q9SRM4 30176245
    427513 5xvw:C (1.849) BS01 peptide ? GO:0006355 ... Q9SRM4 30176245
    427514 5xvw:E (1.849) BS01 peptide ? GO:0006355 ... Q9SRM4 30176245
    427515 5xvx:A (1.8) BS01 NDP 1.4.1.4 GO:0000166 ... B6V7E4 29540480
    427516 5xvx:A (1.8) BS02 AKG 1.4.1.4 GO:0000166 ... B6V7E4 29540480
    427517 5xvz:A (1.9) BS01 HDD 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    427518 5xvz:A (1.9) BS02 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    427519 5xvz:A (1.9) BS03 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    427520 5xvz:B (1.9) BS01 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    427521 5xvz:B (1.9) BS02 HDD 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    427522 5xvz:B (1.9) BS03 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    427523 5xvz:B (1.9) BS04 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    427524 5xvz:C (1.9) BS01 HDD 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    427525 5xvz:C (1.9) BS02 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    427526 5xvz:D (1.9) BS01 HDD 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    427527 5xvz:D (1.9) BS02 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    427528 5xw0:A (1.9) BS01 NDP 1.4.1.4 GO:0000166 ... B6V7E4 29540480
    427529 5xw0:A (1.9) BS02 8G0 1.4.1.4 GO:0000166 ... B6V7E4 29540480
    427530 5xw1:A (1.9) BS01 CA 3.4.21.4 GO:0004252 ... P00761 N/A
    427531 5xw1:B (1.9) BS01 peptide 3.4.21.4 GO:0004252 ... P00761 N/A
    427532 5xw2:A (1.298) BS01 HEM ? GO:0004497 ... D9WMQ6 28687492
    427533 5xw2:A (1.298) BS02 MG ? GO:0004497 ... D9WMQ6 28687492
    427534 5xw5:A (1.85) BS01 peptide 3.1.3.48 GO:0006470 ... Q00684 28758351
    427535 5xw6:A (3.1) BS01 128 N/A GO:0001614 ... N/A 29026074
    427536 5xw6:A (3.1) BS02 128 N/A GO:0001614 ... N/A 29026074
    427537 5xw6:B (3.1) BS01 128 N/A GO:0001614 ... N/A 29026074
    427538 5xw6:B (3.1) BS02 128 N/A GO:0001614 ... N/A 29026074
    427539 5xw6:C (3.1) BS01 128 N/A GO:0001614 ... N/A 29026074
    427540 5xw6:C (3.1) BS02 128 N/A GO:0001614 ... N/A 29026074
    427541 5xw8:A (2.002) BS01 peptide 3.4.21.4 GO:0004252 ... P00761 29486250
    427542 5xw8:A (2.002) BS02 CA 3.4.21.4 GO:0004252 ... P00761 29486250
    427543 5xw8:B (2.002) BS01 peptide 3.4.21.4 GO:0004252 ... P00761 29486250
    427544 5xw9:A (2.0) BS01 peptide 3.4.21.4 GO:0004252 ... P00761 29486250
    427545 5xw9:A (2.0) BS02 CA 3.4.21.4 GO:0004252 ... P00761 29486250
    427546 5xw9:B (2.0) BS01 peptide 3.4.21.4 GO:0004252 ... P00761 29486250
    427547 5xwa:A (1.9) BS01 CA 3.4.21.4 GO:0004252 ... P00761 29486250
    427548 5xwa:B (1.9) BS01 peptide 3.4.21.4 GO:0004252 ... P00761 29486250
    427549 5xwc:A (1.75) BS01 NAP 1.4.1.4 GO:0000166 ... B6V7E4 29540480
    427550 5xwc:A (1.75) BS02 8GL 1.4.1.4 GO:0000166 ... B6V7E4 29540480
    427551 5xwc:A (1.75) BS03 2IT 1.4.1.4 GO:0000166 ... B6V7E4 29540480
    427552 5xwd:A (2.894) BS01 ZN 2.7.10.1 N/A P00533 29462206
    427553 5xwd:A (2.894) BS02 ZN 2.7.10.1 N/A P00533 29462206
    427554 5xwd:A (2.894) BS03 ZN 2.7.10.1 N/A P00533 29462206
    427555 5xwd:A (2.894) BS04 ZN 2.7.10.1 N/A P00533 29462206
    427556 5xwd:A (2.894) BS05 ZN 2.7.10.1 N/A P00533 29462206
    427557 5xwd:D (2.894) BS01 ZN N/A N/A N/A 29462206
    427558 5xwd:H (2.894) BS01 ZN N/A N/A N/A 29462206
    427559 5xwi:A (1.872) BS01 ZN 3.1.3.1 GO:0004035 ... A1YYW7 N/A
    427560 5xwi:A (1.872) BS02 ZN 3.1.3.1 GO:0004035 ... A1YYW7 N/A
    427561 5xwi:A (1.872) BS03 CA 3.1.3.1 GO:0004035 ... A1YYW7 N/A
    427562 5xwj:A (1.8) BS01 peptide 3.4.21.4 GO:0004252 ... P00761 29486250
    427563 5xwj:A (1.8) BS02 CA 3.4.21.4 GO:0004252 ... P00761 29486250
    427564 5xwj:B (1.8) BS01 peptide 3.4.21.4 GO:0004252 ... P00761 29486250
    427565 5xwj:B (1.8) BS02 CA 3.4.21.4 GO:0004252 ... P00761 29486250
    427566 5xwk:A (1.901) BS01 ZN 3.1.3.1 GO:0004035 ... A1YYW7 N/A
    427567 5xwk:A (1.901) BS02 ZN 3.1.3.1 GO:0004035 ... A1YYW7 N/A
    427568 5xwk:A (1.901) BS03 CA 3.1.3.1 GO:0004035 ... A1YYW7 N/A
    427569 5xwl:A (2.1) BS01 peptide 3.4.21.4 GO:0004252 ... P00761 29486250
    427570 5xwl:A (2.1) BS02 CA 3.4.21.4 GO:0004252 ... P00761 29486250
    427571 5xwl:B (2.1) BS01 peptide 3.4.21.4 GO:0004252 ... P00761 29486250
    427572 5xwl:B (2.1) BS02 CA 3.4.21.4 GO:0004252 ... P00761 29486250
    427573 5xwm:A (2.45) BS01 ZN ? GO:0003756 ... Q9BS26 30723194
    427574 5xwm:A (2.45) BS02 ZN ? GO:0003756 ... Q9BS26 30723194
    427575 5xwm:A (2.45) BS03 ZN ? GO:0003756 ... Q9BS26 30723194
    427576 5xwm:B (2.45) BS01 ZN ? GO:0003756 ... Q9BS26 30723194
    427577 5xwm:B (2.45) BS02 ZN ? GO:0003756 ... Q9BS26 30723194
    427578 5xwm:B (2.45) BS03 ZN ? GO:0003756 ... Q9BS26 30723194
    427579 5xwm:C (2.45) BS01 ZN ? GO:0003756 ... Q9BS26 30723194
    427580 5xwm:C (2.45) BS02 ZN ? GO:0003756 ... Q9BS26 30723194
    427581 5xwm:C (2.45) BS03 ZN ? GO:0003756 ... Q9BS26 30723194
    427582 5xwm:D (2.45) BS01 ZN ? GO:0003756 ... Q9BS26 30723194
    427583 5xwm:D (2.45) BS02 ZN ? GO:0003756 ... Q9BS26 30723194
    427584 5xwm:D (2.45) BS03 ZN ? GO:0003756 ... Q9BS26 30723194
    427585 5xwp:A (3.086) BS01 rna 3.1.-.- GO:0003723 ... C7NBY4 28757251
    427586 5xwp:A (3.086) BS02 rna 3.1.-.- GO:0003723 ... C7NBY4 28757251
    427587 5xwp:B (3.086) BS01 rna 3.1.-.- GO:0003723 ... C7NBY4 28757251
    427588 5xwp:B (3.086) BS02 rna 3.1.-.- GO:0003723 ... C7NBY4 28757251
    427589 5xwp:B (3.086) BS03 rna 3.1.-.- GO:0003723 ... C7NBY4 28757251
    427590 5xwr:A (2.69) BS01 peptide ? GO:0000118 ... Q09028 29976840
    427591 5xwr:B (2.69) BS01 peptide ? GO:0000118 ... Q09028 29976840
    427592 5xwr:B (2.69) BS02 peptide ? GO:0000118 ... Q09028 29976840
    427593 5xwv:A (1.8) BS01 NDP ? N/A Q93NW7 29626512
    427594 5xwv:A (1.8) BS02 8H6 ? N/A Q93NW7 29626512
    427595 5xwv:B (1.8) BS01 NDP ? N/A Q93NW7 29626512
    427596 5xwv:B (1.8) BS02 8H6 ? N/A Q93NW7 29626512
    427597 5xww:A (1.96) BS01 NAP ? N/A Q93NW7 29626512
    427598 5xww:A (1.96) BS02 8H6 ? N/A Q93NW7 29626512
    427599 5xww:B (1.96) BS01 NAP ? N/A Q93NW7 29626512
    427600 5xww:B (1.96) BS02 8H6 ? N/A Q93NW7 29626512

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).