SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    42801 1pwu:B (2.7) BS01 ZN 3.4.24.83 GO:0003824 ... P15917 14718924
    42802 1pwu:B (2.7) BS02 GM6 3.4.24.83 GO:0003824 ... P15917 14718924
    42803 1pwv:A (2.85) BS01 peptide 3.4.24.83 GO:0003824 ... P15917 14718924
    42804 1pwv:B (2.85) BS01 peptide 3.4.24.83 GO:0003824 ... P15917 14718924
    42805 1pww:A (2.8) BS01 peptide 3.4.24.83 GO:0003824 ... P15917 14718924
    42806 1pww:A (2.8) BS02 ZN 3.4.24.83 GO:0003824 ... P15917 14718924
    42807 1pww:B (2.8) BS01 peptide 3.4.24.83 GO:0003824 ... P15917 14718924
    42808 1pww:B (2.8) BS02 ZN 3.4.24.83 GO:0003824 ... P15917 14718924
    42809 1pwy:E (2.8) BS01 AC2 2.4.2.1 GO:0000255 ... P00491 12914786 BindingDB: Ki=180000nM
    42810 1pwz:A (2.5) BS01 CL ? N/A Q93D82 14517233
    42811 1pwz:A (2.5) BS02 RSO ? N/A Q93D82 14517233
    42812 1pwz:B (2.5) BS01 CL ? N/A Q93D82 14517233
    42813 1pwz:B (2.5) BS02 RSO ? N/A Q93D82 14517233
    42814 1px0:A (1.9) BS01 RPN ? N/A Q93D82 14517233
    42815 1px0:B (1.9) BS01 RPN ? N/A Q93D82 14517233
    42816 1px0:C (1.9) BS01 RPN ? N/A Q93D82 14517233
    42817 1px0:D (1.9) BS01 RPN ? N/A Q93D82 14517233
    42818 1px2:A (2.23) BS01 CA ? GO:0005524 ... P09951 14688264
    42819 1px2:A (2.23) BS02 ATP ? GO:0005524 ... P09951 14688264 MOAD: Kd=120nM
    42820 1px2:B (2.23) BS01 CA ? GO:0005524 ... P09951 14688264
    42821 1px2:B (2.23) BS02 ATP ? GO:0005524 ... P09951 14688264 MOAD: Kd=120nM
    42822 1px3:A (1.6) BS01 MG 3.2.1.23 GO:0000287 ... P00722 14621996
    42823 1px3:A (1.6) BS02 MG 3.2.1.23 GO:0000287 ... P00722 14621996
    42824 1px3:B (1.6) BS01 MG 3.2.1.23 GO:0000287 ... P00722 14621996
    42825 1px3:B (1.6) BS02 MG 3.2.1.23 GO:0000287 ... P00722 14621996
    42826 1px3:C (1.6) BS01 MG 3.2.1.23 GO:0000287 ... P00722 14621996
    42827 1px3:C (1.6) BS02 MG 3.2.1.23 GO:0000287 ... P00722 14621996
    42828 1px3:D (1.6) BS01 MG 3.2.1.23 GO:0000287 ... P00722 14621996
    42829 1px3:D (1.6) BS02 MG 3.2.1.23 GO:0000287 ... P00722 14621996
    42830 1px4:A (1.6) BS01 MG 3.2.1.23 GO:0000287 ... P00722 14621996
    42831 1px4:A (1.6) BS02 MG 3.2.1.23 GO:0000287 ... P00722 14621996
    42832 1px4:A (1.6) BS03 IPT 3.2.1.23 GO:0000287 ... P00722 14621996 MOAD: Ki=0.59mM
    BindingDB: Ki=7.6e+4nM
    42833 1px4:B (1.6) BS01 MG 3.2.1.23 GO:0000287 ... P00722 14621996
    42834 1px4:B (1.6) BS02 MG 3.2.1.23 GO:0000287 ... P00722 14621996
    42835 1px4:B (1.6) BS03 IPT 3.2.1.23 GO:0000287 ... P00722 14621996 MOAD: Ki=0.59mM
    BindingDB: Ki=7.6e+4nM
    42836 1px4:C (1.6) BS01 MG 3.2.1.23 GO:0000287 ... P00722 14621996
    42837 1px4:C (1.6) BS02 MG 3.2.1.23 GO:0000287 ... P00722 14621996
    42838 1px4:C (1.6) BS03 IPT 3.2.1.23 GO:0000287 ... P00722 14621996 MOAD: Ki=0.59mM
    BindingDB: Ki=7.6e+4nM
    42839 1px4:D (1.6) BS01 MG 3.2.1.23 GO:0000287 ... P00722 14621996
    42840 1px4:D (1.6) BS02 MG 3.2.1.23 GO:0000287 ... P00722 14621996
    42841 1px4:D (1.6) BS03 IPT 3.2.1.23 GO:0000287 ... P00722 14621996 MOAD: Ki=0.59mM
    BindingDB: Ki=7.6e+4nM
    42842 1px6:A (2.1) BS01 GSH 2.5.1.18 GO:0000122 ... P09211 N/A
    42843 1px6:B (2.1) BS01 GSH 2.5.1.18 GO:0000122 ... P09211 N/A
    42844 1px7:A (2.03) BS01 GSH 2.5.1.18 GO:0000122 ... P09211 N/A
    42845 1px7:B (2.03) BS01 GSH 2.5.1.18 GO:0000122 ... P09211 N/A
    42846 1px8:A (2.4) BS01 XYP 3.2.1.37 GO:0004553 ... P36906 14659747
    42847 1px8:B (2.4) BS01 XYP 3.2.1.37 GO:0004553 ... P36906 14659747
    42848 1pxa:A (2.3) BS01 FAD 1.14.13.2 GO:0016491 ... P20586 8312276
    42849 1pxb:A (2.3) BS01 FAD 1.14.13.2 GO:0016491 ... P20586 8312276
    42850 1pxc:A (2.1) BS01 FAD 1.14.13.2 GO:0016491 ... P20586 8312276
    42851 1pxd:A (1.8) BS01 peptide ? GO:0019862 ... P18670 14747704
    42852 1pxd:A (1.8) BS02 SFP ? GO:0019862 ... P18670 14747704 MOAD: Ka=6500M^-1
    42853 1pxe:A (-1.00) BS01 ZN ? GO:0005634 ... P70475 14744132
    42854 1pxg:A (1.7) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 12909636
    42855 1pxg:A (1.7) BS02 PRF 2.4.2.29 GO:0002099 ... P28720 12909636
    42856 1pxh:A (2.15) BS01 SNA 3.1.3.48 GO:0004725 ... P18031 12547827
    42857 1pxi:A (1.95) BS01 CK1 2.7.11.22 GO:0000082 ... P24941 12679018
    42858 1pxj:A (2.3) BS01 CK2 2.7.11.22 GO:0000082 ... P24941 12679018 BindingDB: Ki=6500nM, Kd=30300nM, IC50=6.50e+3nM, kon=8.22E+04M-1-s-1, koff=1.42E+00s-1
    42859 1pxk:A (2.8) BS01 CK3 2.7.11.22 GO:0000082 ... P24941 12679018
    42860 1pxl:A (2.5) BS01 CK4 2.7.11.22 GO:0000082 ... P24941 12679018 BindingDB: IC50=2.9e+2nM, Ki=290nM
    42861 1pxm:A (2.53) BS01 CK5 2.7.11.22 GO:0000082 ... P24941 15027857 BindingDB: Ki=60nM
    42862 1pxn:A (2.5) BS01 CK6 2.7.11.22 GO:0000082 ... P24941 15027857 MOAD: Ki=0.07uM
    BindingDB: Ki=70nM
    42863 1pxo:A (1.96) BS01 CK7 2.7.11.22 GO:0000082 ... P24941 15027857 MOAD: Ki=2nM
    BindingDB: IC50=10.0nM, Ki=2nM
    42864 1pxp:A (2.3) BS01 CK8 2.7.11.22 GO:0000082 ... P24941 15027857 MOAD: Ki=0.22uM
    BindingDB: IC50=2.2e+2nM, Ki=220nM
    42865 1pxr:A (1.7) BS01 RET ? GO:0005216 ... P02945 14659758
    42866 1pxr:B (1.7) BS01 RET ? GO:0005216 ... P02945 14659758
    42867 1pxs:A (2.2) BS01 RET ? GO:0005216 ... P02945 14659758
    42868 1pxs:B (2.2) BS01 RET ? GO:0005216 ... P02945 14659758
    42869 1pxx:A (2.9) BS01 HEM 1.14.99.1 GO:0004601 ... Q05769 12925531
    42870 1pxx:A (2.9) BS02 DIF 1.14.99.1 GO:0004601 ... Q05769 12925531 BindingDB: IC50=22nM
    42871 1pxx:B (2.9) BS01 HEM 1.14.99.1 GO:0004601 ... Q05769 12925531
    42872 1pxx:B (2.9) BS02 DIF 1.14.99.1 GO:0004601 ... Q05769 12925531 BindingDB: IC50=22nM
    42873 1pxx:C (2.9) BS01 HEM 1.14.99.1 GO:0004601 ... Q05769 12925531
    42874 1pxx:C (2.9) BS02 DIF 1.14.99.1 GO:0004601 ... Q05769 12925531 BindingDB: IC50=22nM
    42875 1pxx:D (2.9) BS01 HEM 1.14.99.1 GO:0004601 ... Q05769 12925531
    42876 1pxx:D (2.9) BS02 DIF 1.14.99.1 GO:0004601 ... Q05769 12925531 BindingDB: IC50=22nM
    42877 1py0:A (2.0) BS01 ZN ? GO:0005507 ... P04377 15224334
    42878 1py0:A (2.0) BS02 YMA ? GO:0005507 ... P04377 15224334
    42879 1py1:A (2.6) BS01 peptide ? GO:0005802 ... Q9UJY5 14567678
    42880 1py1:B (2.6) BS01 peptide ? GO:0005802 ... Q9UJY5 14567678
    42881 1py1:C (2.6) BS01 peptide ? GO:0005802 ... Q9UJY5 14567678
    42882 1py1:D (2.6) BS01 peptide ? GO:0005802 ... Q9UJY5 14567678
    42883 1py2:A (2.8) BS01 FRH ? GO:0002366 ... P60568 14664558
    42884 1py2:B (2.8) BS01 ZN ? GO:0002366 ... P60568 14664558
    42885 1py2:B (2.8) BS02 FRH ? GO:0002366 ... P60568 14664558
    42886 1py2:C (2.8) BS01 FRH ? GO:0002366 ... P60568 14664558
    42887 1py2:D (2.8) BS01 FRH ? GO:0002366 ... P60568 14664558
    42888 1py5:A (2.3) BS01 PY1 2.7.11.30 GO:0004672 ... P36897 15177479 MOAD: ic50=51nM
    BindingDB: IC50=51nM, Kd=5nM
    42889 1py6:A (1.8) BS01 RET ? GO:0005216 ... P02945 14659758
    42890 1py6:B (1.8) BS01 RET ? GO:0005216 ... P02945 14659758
    42891 1pyc:A (-1.00) BS01 ZN ? GO:0000981 ... P0CS82 8683583
    42892 1pyc:A (-1.00) BS02 ZN ? GO:0000981 ... P0CS82 8683583
    42893 1pyd:A (2.4) BS01 MG 4.1.1.-
    4.1.1.43
    4.1.1.72
    4.1.1.74
    GO:0000287 ... P06169 8512926
    42894 1pyd:A (2.4) BS02 TPP 4.1.1.-
    4.1.1.43
    4.1.1.72
    4.1.1.74
    GO:0000287 ... P06169 8512926
    42895 1pyd:A (2.4) BS03 TPP 4.1.1.-
    4.1.1.43
    4.1.1.72
    4.1.1.74
    GO:0000287 ... P06169 8512926
    42896 1pyd:B (2.4) BS01 TPP 4.1.1.-
    4.1.1.43
    4.1.1.72
    4.1.1.74
    GO:0000287 ... P06169 8512926
    42897 1pyd:B (2.4) BS02 MG 4.1.1.-
    4.1.1.43
    4.1.1.72
    4.1.1.74
    GO:0000287 ... P06169 8512926
    42898 1pyd:B (2.4) BS03 TPP 4.1.1.-
    4.1.1.43
    4.1.1.72
    4.1.1.74
    GO:0000287 ... P06169 8512926
    42899 1pye:A (2.0) BS01 PM1 2.7.11.22 GO:0000082 ... P24941 14749470 MOAD: Ki=386nM
    BindingDB: IC50=324nM
    42900 1pyg:A (2.87) BS01 AMP 2.4.1.1 GO:0004645 ... P00489 1962195
    42901 1pyg:A (2.87) BS02 PDP 2.4.1.1 GO:0004645 ... P00489 1962195
    42902 1pyg:A (2.87) BS03 AMP 2.4.1.1 GO:0004645 ... P00489 1962195
    42903 1pyg:B (2.87) BS01 AMP 2.4.1.1 GO:0004645 ... P00489 1962195
    42904 1pyg:B (2.87) BS02 AMP 2.4.1.1 GO:0004645 ... P00489 1962195
    42905 1pyg:B (2.87) BS03 PDP 2.4.1.1 GO:0004645 ... P00489 1962195
    42906 1pyg:C (2.87) BS01 AMP 2.4.1.1 GO:0004645 ... P00489 1962195
    42907 1pyg:C (2.87) BS02 PDP 2.4.1.1 GO:0004645 ... P00489 1962195
    42908 1pyg:C (2.87) BS03 AMP 2.4.1.1 GO:0004645 ... P00489 1962195
    42909 1pyg:D (2.87) BS01 AMP 2.4.1.1 GO:0004645 ... P00489 1962195
    42910 1pyg:D (2.87) BS02 AMP 2.4.1.1 GO:0004645 ... P00489 1962195
    42911 1pyg:D (2.87) BS03 PDP 2.4.1.1 GO:0004645 ... P00489 1962195
    42912 1pyh:A (4.8) BS01 peptide N/A N/A N/A 14671305
    42913 1pyh:A (4.8) BS02 peptide N/A N/A N/A 14671305
    42914 1pyh:A (4.8) BS03 BCL N/A N/A N/A 14671305
    42915 1pyh:A (4.8) BS04 BCL N/A N/A N/A 14671305
    42916 1pyh:B (4.8) BS01 BPH N/A N/A N/A 14671305
    42917 1pyh:B (4.8) BS02 BCL N/A N/A N/A 14671305
    42918 1pyh:C (4.8) BS01 peptide N/A N/A N/A 14671305
    42919 1pyh:E (4.8) BS01 BCL N/A N/A N/A 14671305
    42920 1pyh:K (4.8) BS01 BCL N/A N/A N/A 14671305
    42921 1pyh:S (4.8) BS01 BCL N/A N/A N/A 14671305
    42922 1pyh:Y (4.8) BS01 BCL N/A N/A N/A 14671305
    42923 1pyi:A (3.2) BS01 dna ? GO:0000981 ... P07272 7958913
    42924 1pyi:A (3.2) BS02 dna ? GO:0000981 ... P07272 7958913
    42925 1pyi:A (3.2) BS03 ZN ? GO:0000981 ... P07272 7958913
    42926 1pyi:A (3.2) BS04 ZN ? GO:0000981 ... P07272 7958913
    42927 1pyi:B (3.2) BS01 dna ? GO:0000981 ... P07272 7958913
    42928 1pyi:B (3.2) BS02 dna ? GO:0000981 ... P07272 7958913
    42929 1pyi:B (3.2) BS03 ZN ? GO:0000981 ... P07272 7958913
    42930 1pym:A (1.8) BS01 OXL 5.4.2.9 GO:0003824 ... P56839 10378273
    42931 1pym:B (1.8) BS01 OXL 5.4.2.9 GO:0003824 ... P56839 10378273
    42932 1pyn:A (2.2) BS01 941 3.1.3.48 GO:0004725 ... P18031 12951078 MOAD: Ki=3.2uM
    BindingDB: Ki=3200nM
    42933 1pyo:A (1.65) BS01 peptide 3.4.22.55 GO:0004197 ... P42575 12920126
    42934 1pyo:B (1.65) BS01 peptide 3.4.22.55 GO:0004197 ... P42575 12920126
    42935 1pyo:C (1.65) BS01 peptide 3.4.22.55 GO:0004197 ... P42575 12920126
    42936 1pyo:D (1.65) BS01 peptide 3.4.22.55 GO:0004197 ... P42575 12920126
    42937 1pyt:B (2.35) BS01 ZN 3.4.17.1 GO:0004181 ... P00730 7556081
    42938 1pyt:C (2.35) BS01 CA ? GO:0004252 ... P05805 7556081
    42939 1pyu:B (1.9) BS01 peptide 4.1.1.11 GO:0004068 ... P0A790 14633979
    42940 1pyu:D (1.9) BS01 peptide 4.1.1.11 GO:0004068 ... P0A790 14633979
    42941 1pyu:D (1.9) BS02 peptide 4.1.1.11 GO:0004068 ... P0A790 14633979
    42942 1pyw:A (2.1) BS01 peptide ? GO:0006955 ... P01903 12952957
    42943 1pyw:B (2.1) BS01 peptide ? GO:0006955 ... P01911 12952957
    42944 1pyx:A (2.4) BS01 MG 2.7.11.1
    2.7.11.26
    GO:0001837 ... P49841 14529625
    42945 1pyx:A (2.4) BS02 ANP 2.7.11.1
    2.7.11.26
    GO:0001837 ... P49841 14529625
    42946 1pyx:B (2.4) BS01 MG 2.7.11.1
    2.7.11.26
    GO:0001837 ... P49841 14529625
    42947 1pyx:B (2.4) BS02 ANP 2.7.11.1
    2.7.11.26
    GO:0001837 ... P49841 14529625
    42948 1pyy:A (2.42) BS01 GLC ? GO:0005886 ... P59676 12923202
    42949 1pyy:A (2.42) BS02 TRV ? GO:0005886 ... P59676 12923202
    42950 1pz0:A (2.35) BS01 NAP 1.1.1.- GO:0005829 ... P46336 15019785
    42951 1pz1:A (2.2) BS01 NAP 1.1.1.- GO:0005829 ... P80874 15019785
    42952 1pz1:B (2.2) BS01 NAP 1.1.1.- GO:0005829 ... P80874 15019785
    42953 1pz2:A (2.0) BS01 AHR 3.2.1.55 GO:0000272 ... Q9XBQ3 14517232
    42954 1pz2:B (2.0) BS01 AHR 3.2.1.55 GO:0000272 ... Q9XBQ3 14517232
    42955 1pz5:A (1.8) BS01 peptide ? GO:0005576 ... A2NHM3 14645714
    42956 1pz5:B (1.8) BS01 peptide ? GO:0003823 ... P01801 14645714
    42957 1pz7:A (1.421) BS01 CA ? N/A P31696 15016366
    42958 1pz7:B (1.421) BS01 CA ? N/A P31696 15016366
    42959 1pz8:A (2.35) BS01 CA ? N/A P31696 15016366
    42960 1pz8:B (2.35) BS01 CA ? N/A P31696 15016366
    42961 1pz8:C (2.35) BS01 CA ? N/A P31696 15016366
    42962 1pz8:D (2.35) BS01 CA ? N/A P31696 15016366
    42963 1pza:A (1.8) BS01 CU ? GO:0005507 ... P04377 8034003
    42964 1pzb:A (1.8) BS01 CU ? GO:0005507 ... P04377 8034003
    42965 1pzf:A (2.2) BS01 OXL 1.1.1.27 GO:0003824 ... P90613 14744130
    42966 1pzf:A (2.2) BS02 A3D 1.1.1.27 GO:0003824 ... P90613 14744130
    42967 1pzf:B (2.2) BS01 OXL 1.1.1.27 GO:0003824 ... P90613 14744130
    42968 1pzf:B (2.2) BS02 A3D 1.1.1.27 GO:0003824 ... P90613 14744130
    42969 1pzf:C (2.2) BS01 OXL 1.1.1.27 GO:0003824 ... P90613 14744130
    42970 1pzf:C (2.2) BS02 A3D 1.1.1.27 GO:0003824 ... P90613 14744130
    42971 1pzf:D (2.2) BS01 OXL 1.1.1.27 GO:0003824 ... P90613 14744130
    42972 1pzf:D (2.2) BS02 A3D 1.1.1.27 GO:0003824 ... P90613 14744130
    42973 1pzg:A (1.6) BS01 SO4 1.1.1.27 GO:0003824 ... P90613 14744130
    42974 1pzg:A (1.6) BS02 A3D 1.1.1.27 GO:0003824 ... P90613 14744130 MOAD: Ki=25mM
    42975 1pzg:B (1.6) BS01 SO4 1.1.1.27 GO:0003824 ... P90613 14744130
    42976 1pzg:B (1.6) BS02 A3D 1.1.1.27 GO:0003824 ... P90613 14744130 MOAD: Ki=25mM
    42977 1pzg:C (1.6) BS01 SO4 1.1.1.27 GO:0003824 ... P90613 14744130
    42978 1pzg:C (1.6) BS02 A3D 1.1.1.27 GO:0003824 ... P90613 14744130 MOAD: Ki=25mM
    42979 1pzg:D (1.6) BS01 SO4 1.1.1.27 GO:0003824 ... P90613 14744130
    42980 1pzg:D (1.6) BS02 A3D 1.1.1.27 GO:0003824 ... P90613 14744130 MOAD: Ki=25mM
    42981 1pzh:A (1.9) BS01 OXL 1.1.1.27 GO:0003824 ... P90613 14744130
    42982 1pzh:A (1.9) BS02 NAD 1.1.1.27 GO:0003824 ... P90613 14744130
    42983 1pzh:B (1.9) BS01 OXL 1.1.1.27 GO:0003824 ... P90613 14744130
    42984 1pzh:B (1.9) BS02 NAD 1.1.1.27 GO:0003824 ... P90613 14744130
    42985 1pzh:C (1.9) BS01 OXL 1.1.1.27 GO:0003824 ... P90613 14744130
    42986 1pzh:C (1.9) BS02 NAD 1.1.1.27 GO:0003824 ... P90613 14744130
    42987 1pzh:D (1.9) BS01 OXL 1.1.1.27 GO:0003824 ... P90613 14744130
    42988 1pzh:D (1.9) BS02 NAD 1.1.1.27 GO:0003824 ... P90613 14744130
    42989 1pzi:D (1.99) BS01 1DM ? GO:0005576 ... P32890 14980603 MOAD: Kd=60uM
    42990 1pzi:E (1.99) BS01 1DM ? GO:0005576 ... P32890 14980603 MOAD: Kd=60uM
    42991 1pzi:F (1.99) BS01 1DM ? GO:0005576 ... P32890 14980603 MOAD: Kd=60uM
    42992 1pzi:G (1.99) BS01 1DM ? GO:0005576 ... P32890 14980603 MOAD: Kd=60uM
    42993 1pzi:H (1.99) BS01 1DM ? GO:0005576 ... P32890 14980603 MOAD: Kd=60uM
    42994 1pzj:D (1.46) BS01 15B ? GO:0005576 ... Q57193 14980603 MOAD: ic50=0.32mM
    42995 1pzj:D (1.46) BS02 15B ? GO:0005576 ... Q57193 14980603 MOAD: ic50=0.32mM
    42996 1pzj:E (1.46) BS01 J15 ? GO:0005576 ... Q57193 14980603 MOAD: ic50=0.32mM
    42997 1pzj:F (1.46) BS01 J15 ? GO:0005576 ... Q57193 14980603 MOAD: ic50=0.32mM
    42998 1pzj:G (1.46) BS01 J15 ? GO:0005576 ... Q57193 14980603
    42999 1pzj:G (1.46) BS02 15B ? GO:0005576 ... Q57193 14980603 MOAD: ic50=0.32mM
    43000 1pzj:H (1.46) BS01 15B ? GO:0005576 ... Q57193 14980603 MOAD: ic50=0.32mM

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).