SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    44401 1qvu:A (2.96) BS01 ET ? GO:0003677 ... P0A0N4 15257299
    44402 1qvu:A (2.96) BS02 PRL ? GO:0003677 ... P0A0N4 15257299
    44403 1qvu:B (2.96) BS01 ET ? GO:0003677 ... P0A0N4 15257299
    44404 1qw4:A (2.4) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 12954642
    44405 1qw4:A (2.4) BS02 H4B 1.14.13.39 GO:0004517 ... P29477 12954642
    44406 1qw4:A (2.4) BS03 3AR 1.14.13.39 GO:0004517 ... P29477 12954642
    44407 1qw4:B (2.4) BS01 ZN 1.14.13.39 GO:0004517 ... P29477 12954642
    44408 1qw4:B (2.4) BS02 HEM 1.14.13.39 GO:0004517 ... P29477 12954642
    44409 1qw4:B (2.4) BS03 H4B 1.14.13.39 GO:0004517 ... P29477 12954642
    44410 1qw4:B (2.4) BS04 3AR 1.14.13.39 GO:0004517 ... P29477 12954642
    44411 1qw5:A (2.7) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 12954642
    44412 1qw5:A (2.7) BS02 H4B 1.14.13.39 GO:0004517 ... P29477 12954642
    44413 1qw5:A (2.7) BS03 14W 1.14.13.39 GO:0004517 ... P29477 12954642
    44414 1qw5:B (2.7) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 12954642
    44415 1qw5:B (2.7) BS02 H4B 1.14.13.39 GO:0004517 ... P29477 12954642
    44416 1qw5:B (2.7) BS03 14W 1.14.13.39 GO:0004517 ... P29477 12954642
    44417 1qw6:A (2.1) BS01 ZN 1.14.13.39 GO:0004517 ... P29476 12954642
    44418 1qw6:A (2.1) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 12954642
    44419 1qw6:A (2.1) BS03 H4B 1.14.13.39 GO:0004517 ... P29476 12954642
    44420 1qw6:A (2.1) BS04 3AR 1.14.13.39 GO:0004517 ... P29476 12954642
    44421 1qw7:A (1.9) BS01 CO 3.1.8.1 GO:0004063 ... P0A434 16188223
    44422 1qw7:A (1.9) BS02 CO 3.1.8.1 GO:0004063 ... P0A434 16188223
    44423 1qw7:B (1.9) BS01 CO 3.1.8.1 GO:0004063 ... P0A434 16188223
    44424 1qw7:B (1.9) BS02 CO 3.1.8.1 GO:0004063 ... P0A434 16188223
    44425 1qw8:A (1.8) BS01 AHR 3.2.1.55 GO:0000272 ... Q9XBQ3 14517232
    44426 1qw8:B (1.8) BS01 AHR 3.2.1.55 GO:0000272 ... Q9XBQ3 14517232
    44427 1qw9:A (1.2) BS01 KHP 3.2.1.55 GO:0000272 ... Q9XBQ3 14517232
    44428 1qw9:B (1.2) BS01 KHP 3.2.1.55 GO:0000272 ... Q9XBQ3 14517232
    44429 1qwc:A (2.3) BS01 ZN 1.14.13.39 GO:0004517 ... P29476 12954642
    44430 1qwc:A (2.3) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 12954642
    44431 1qwc:A (2.3) BS03 H4B 1.14.13.39 GO:0004517 ... P29476 12954642
    44432 1qwc:A (2.3) BS04 14W 1.14.13.39 GO:0004517 ... P29476 12954642
    44433 1qwe:A (-1.00) BS01 peptide 2.7.10.2 GO:0006897 ... P00525 8618911
    44434 1qwf:A (-1.00) BS01 peptide 2.7.10.2 GO:0006897 ... P00525 8618911
    44435 1qwg:A (1.6) BS01 SO4 4.4.1.19 GO:0016829 ... Q57703 12952952
    44436 1qwg:A (1.6) BS02 SO4 4.4.1.19 GO:0016829 ... Q57703 12952952
    44437 1qwg:A (1.6) BS03 SO4 4.4.1.19 GO:0016829 ... Q57703 12952952
    44438 1qwj:A (2.8) BS01 NCC 2.7.7.43 N/A Q99KK2 14636592
    44439 1qwj:B (2.8) BS01 NCC 2.7.7.43 N/A Q99KK2 14636592
    44440 1qwj:C (2.8) BS01 NCC 2.7.7.43 N/A Q99KK2 14636592
    44441 1qwj:D (2.8) BS01 NCC 2.7.7.43 N/A Q99KK2 14636592
    44442 1qwj:D (2.8) BS02 NCC 2.7.7.43 N/A Q99KK2 14636592
    44443 1qwl:A (1.6) BS01 HEM 1.11.1.6 GO:0004096 ... P77872 15023060
    44444 1qwl:A (1.6) BS02 OXY 1.11.1.6 GO:0004096 ... P77872 15023060
    44445 1qwl:B (1.6) BS01 HEM 1.11.1.6 GO:0004096 ... P77872 15023060
    44446 1qwm:A (1.6) BS01 HEM 1.11.1.6 GO:0004096 ... P77872 15023060
    44447 1qwm:B (1.6) BS01 HEM 1.11.1.6 GO:0004096 ... P77872 15023060
    44448 1qwn:A (1.2) BS01 ZN 3.2.1.114 GO:0000139 ... Q24451 12960159
    44449 1qwn:A (1.2) BS02 GUL 3.2.1.114 GO:0000139 ... Q24451 12960159
    44450 1qwr:A (1.8) BS01 ZN 5.3.1.8 GO:0004476 ... P39841 N/A
    44451 1qwr:B (1.8) BS01 ZN 5.3.1.8 GO:0004476 ... P39841 N/A
    44452 1qws:A (1.9) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 12777389
    44453 1qws:B (1.9) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 12777389
    44454 1qws:C (1.9) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 12777389
    44455 1qws:D (1.9) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 12777389
    44456 1qwu:A (2.03) BS01 ZN 3.2.1.114 GO:0000139 ... Q24451 12960159
    44457 1qwu:A (2.03) BS02 GUL 3.2.1.114 GO:0000139 ... Q24451 12960159
    44458 1qwy:A (1.3) BS01 ZN 3.4.24.75 GO:0004222 ... O33599 14687573
    44459 1qwz:A (1.75) BS01 ETM 3.4.22.71 N/A Q2FZE3 14725770
    44460 1qx0:A (2.26) BS01 dna ? N/A Q47673 14625590
    44461 1qx0:A (2.26) BS02 ZN ? N/A Q47673 14625590
    44462 1qx1:A (1.3) BS01 ZN 3.2.1.114 GO:0000139 ... Q24451 12960159
    44463 1qx1:A (1.3) BS02 FMF 3.2.1.114 GO:0000139 ... Q24451 12960159
    44464 1qx2:A (1.44) BS01 CA ? GO:0005499 ... P02633 15137763
    44465 1qx2:A (1.44) BS02 CA ? GO:0005499 ... P02633 15137763
    44466 1qx2:B (1.44) BS01 CA ? GO:0005499 ... P02633 15137763
    44467 1qx2:B (1.44) BS02 CA ? GO:0005499 ... P02633 15137763
    44468 1qx4:A (1.8) BS01 FAD 1.6.2.2 GO:0016491 ... P20070 14609324
    44469 1qx4:B (1.8) BS01 FAD 1.6.2.2 GO:0016491 ... P20070 14609324
    44470 1qx6:A (2.7) BS01 E64 3.4.22.71 N/A Q2FZE3 14725770
    44471 1qx7:M (3.09) BS01 peptide ? GO:0000086 ... P0DP29 15130477
    44472 1qxa:A (2.5) BS01 peptide 3.4.22.71 N/A Q2FZE3 14725770
    44473 1qxa:A (2.5) BS02 ETM 3.4.22.71 N/A Q2FZE3 14725770
    44474 1qxd:A (2.25) BS01 HEM ? GO:0004601 ... P69905 15341482
    44475 1qxd:A (2.25) BS02 FU2 ? GO:0004601 ... P69905 15341482
    44476 1qxd:B (2.25) BS01 HEM ? GO:0004601 ... P68871 15341482
    44477 1qxd:C (2.25) BS01 HEM ? GO:0004601 ... P69905 15341482
    44478 1qxd:C (2.25) BS02 FU2 ? GO:0004601 ... P69905 15341482
    44479 1qxd:D (2.25) BS01 HEM ? GO:0004601 ... P68871 15341482
    44480 1qxe:A (1.85) BS01 OXY ? GO:0004601 ... P69905 15341482
    44481 1qxe:A (1.85) BS02 HEM ? GO:0004601 ... P69905 15341482
    44482 1qxe:A (1.85) BS03 FUX ? GO:0004601 ... P69905 15341482
    44483 1qxe:B (1.85) BS01 HEM ? GO:0004601 ... P68871 15341482
    44484 1qxe:C (1.85) BS01 OXY ? GO:0004601 ... P69905 15341482
    44485 1qxe:C (1.85) BS02 HEM ? GO:0004601 ... P69905 15341482
    44486 1qxe:C (1.85) BS03 FUX ? GO:0004601 ... P69905 15341482
    44487 1qxe:D (1.85) BS01 OXY ? GO:0004601 ... P68871 15341482
    44488 1qxe:D (1.85) BS02 HEM ? GO:0004601 ... P68871 15341482
    44489 1qxk:A (2.3) BS01 429 3.1.3.48 GO:0004725 ... P18031 14592481 MOAD: Ki=9uM
    BindingDB: Ki=9000nM, IC50=9000nM
    44490 1qxl:A (2.25) BS01 ZN 3.5.4.4 GO:0004000 ... P56658 15239652
    44491 1qxl:A (2.25) BS02 FR8 3.5.4.4 GO:0004000 ... P56658 15239652 MOAD: Ki=11nM
    44492 1qxn:A (-1.00) BS01 PS5 ? N/A Q56748 14769017
    44493 1qxn:B (-1.00) BS01 PS5 ? N/A Q56748 14769017
    44494 1qxo:A (2.0) BS01 FMN 4.2.3.5 GO:0004107 ... P0A2Y6 14656434 MOAD: Kd=20nM
    BindingDB: Kd=>20000nM
    44495 1qxo:A (2.0) BS02 EPS 4.2.3.5 GO:0004107 ... P0A2Y6 14656434
    44496 1qxo:B (2.0) BS01 FMN 4.2.3.5 GO:0004107 ... P0A2Y6 14656434 MOAD: Kd=20nM
    BindingDB: Kd=>20000nM
    44497 1qxo:B (2.0) BS02 EPS 4.2.3.5 GO:0004107 ... P0A2Y6 14656434
    44498 1qxo:C (2.0) BS01 FMN 4.2.3.5 GO:0004107 ... P0A2Y6 14656434 MOAD: Kd=20nM
    BindingDB: Kd=>20000nM
    44499 1qxo:C (2.0) BS02 FMN 4.2.3.5 GO:0004107 ... P0A2Y6 14656434 MOAD: Kd=20nM
    BindingDB: Kd=>20000nM
    44500 1qxo:C (2.0) BS03 EPS 4.2.3.5 GO:0004107 ... P0A2Y6 14656434
    44501 1qxo:D (2.0) BS01 FMN 4.2.3.5 GO:0004107 ... P0A2Y6 14656434 MOAD: Kd=20nM
    BindingDB: Kd=>20000nM
    44502 1qxo:D (2.0) BS02 FMN 4.2.3.5 GO:0004107 ... P0A2Y6 14656434 MOAD: Kd=20nM
    BindingDB: Kd=>20000nM
    44503 1qxo:D (2.0) BS03 EPS 4.2.3.5 GO:0004107 ... P0A2Y6 14656434
    44504 1qxr:A (1.7) BS01 PA5 5.3.1.9 GO:0004347 ... P83194 12970347
    44505 1qxr:B (1.7) BS01 PA5 5.3.1.9 GO:0004347 ... P83194 12970347
    44506 1qxs:A (2.75) BS01 NAD 1.2.1.12 GO:0004365 ... P22513 14622286
    44507 1qxs:A (2.75) BS02 S70 1.2.1.12 GO:0004365 ... P22513 14622286
    44508 1qxs:B (2.75) BS01 NAD 1.2.1.12 GO:0004365 ... P22513 14622286
    44509 1qxs:C (2.75) BS01 NAD 1.2.1.12 GO:0004365 ... P22513 14622286
    44510 1qxs:D (2.75) BS01 NAD 1.2.1.12 GO:0004365 ... P22513 14622286
    44511 1qxw:A (1.67) BS01 CO 3.4.11.18 GO:0004177 ... P0A078 14998322
    44512 1qxw:A (1.67) BS02 CO 3.4.11.18 GO:0004177 ... P0A078 14998322
    44513 1qxw:A (1.67) BS03 M1C 3.4.11.18 GO:0004177 ... P0A078 14998322 MOAD: ic50=7uM
    44514 1qxy:A (1.04) BS01 CO 3.4.11.18 GO:0004177 ... P0A078 14998322
    44515 1qxy:A (1.04) BS02 CO 3.4.11.18 GO:0004177 ... P0A078 14998322
    44516 1qxy:A (1.04) BS03 CO 3.4.11.18 GO:0004177 ... P0A078 14998322
    44517 1qxy:A (1.04) BS04 M2C 3.4.11.18 GO:0004177 ... P0A078 14998322 MOAD: ic50=16uM
    44518 1qxz:A (1.68) BS01 CO 3.4.11.18 GO:0004177 ... P0A078 14998322
    44519 1qxz:A (1.68) BS02 CO 3.4.11.18 GO:0004177 ... P0A078 14998322
    44520 1qxz:A (1.68) BS03 CO 3.4.11.18 GO:0004177 ... P0A078 14998322
    44521 1qxz:A (1.68) BS04 M3C 3.4.11.18 GO:0004177 ... P0A078 14998322 MOAD: ic50=19uM
    44522 1qy1:A (1.7) BS01 PRZ ? GO:0036094 ... P11588 14871097 MOAD: Kd=0.3uM
    44523 1qy2:A (1.75) BS01 IPZ ? GO:0036094 ... P11589 14871097 MOAD: Kd=1.8uM
    44524 1qy4:A (1.8) BS01 6PG 5.3.1.9 GO:0004347 ... P83194 12970347
    44525 1qy4:B (1.8) BS01 6PG 5.3.1.9 GO:0004347 ... P83194 12970347
    44526 1qy8:A (1.85) BS01 RDI ? GO:0005524 ... P41148 12970348
    44527 1qyb:A (1.75) BS01 FE ? GO:0005506 ... P24931 15023070
    44528 1qyb:A (1.75) BS02 FE ? GO:0005506 ... P24931 15023070
    44529 1qyb:A (1.75) BS03 ZN ? GO:0005506 ... P24931 15023070
    44530 1qye:A (2.1) BS01 CDY ? GO:0005524 ... P41148 12970348
    44531 1qyg:H (1.81) BS01 BCG N/A N/A N/A 15885702
    44532 1qyg:L (1.81) BS01 BCG N/A N/A N/A 15885702
    44533 1qyp:A (-1.00) BS01 ZN ? GO:0003676 ... Q56254 9634694
    44534 1qyv:A (1.81) BS01 NAP 1.1.1.51
    1.1.1.62
    GO:0003824 ... P14061 14966133
    44535 1qyw:A (1.63) BS01 5SD 1.1.1.51
    1.1.1.62
    GO:0003824 ... P14061 14966133
    44536 1qyw:A (1.63) BS02 NAP 1.1.1.51
    1.1.1.62
    GO:0003824 ... P14061 14966133
    44537 1qyx:A (1.89) BS01 ASD 1.1.1.51
    1.1.1.62
    GO:0003824 ... P14061 14966133
    44538 1qyx:A (1.89) BS02 NAP 1.1.1.51
    1.1.1.62
    GO:0003824 ... P14061 14966133
    44539 1qyy:A (2.8) BS01 PT ? N/A P07359 14993663
    44540 1qyy:A (2.8) BS02 PT ? N/A P07359 14993663
    44541 1qyy:G (2.8) BS01 PT ? N/A P07359 14993663
    44542 1qyz:A (1.4) BS01 HCO ? GO:0009055 ... P04164 15379555
    44543 1qz0:A (1.5) BS01 peptide 3.1.3.48 GO:0004725 ... O68720 14609321
    44544 1qz0:A (1.5) BS02 peptide 3.1.3.48 GO:0004725 ... O68720 14609321
    44545 1qz0:B (1.5) BS01 peptide 3.1.3.48 GO:0004725 ... O68720 14609321
    44546 1qz0:B (1.5) BS02 peptide 3.1.3.48 GO:0004725 ... O68720 14609321
    44547 1qz2:A (3.0) BS01 peptide 5.2.1.8 GO:0003755 ... Q02790 15159550
    44548 1qz2:B (3.0) BS01 peptide 5.2.1.8 GO:0003755 ... Q02790 15159550
    44549 1qz3:A (2.3) BS01 HDS ? GO:0016787 ... Q7SIG1 14617621
    44550 1qz5:A (1.45) BS01 ATP 3.6.4.- GO:0000287 ... P68135 14578936
    44551 1qz5:A (1.45) BS02 KAB 3.6.4.- GO:0000287 ... P68135 14578936
    44552 1qz6:A (1.6) BS01 GLC 3.6.4.- GO:0000287 ... P68135 14578936
    44553 1qz6:A (1.6) BS02 FRU 3.6.4.- GO:0000287 ... P68135 14578936
    44554 1qz6:A (1.6) BS03 ATP 3.6.4.- GO:0000287 ... P68135 14578936
    44555 1qz6:A (1.6) BS04 JAS 3.6.4.- GO:0000287 ... P68135 14578936
    44556 1qz7:A (2.2) BS01 peptide ? GO:0007155 ... P35222 14600025
    44557 1qz9:A (1.85) BS01 PLP 3.7.1.3 GO:0003824 ... P83788 14756555
    44558 1qzf:A (2.8) BS01 UMP 1.5.1.3
    2.1.1.45
    GO:0000166 ... Q27552 14555647
    44559 1qzf:A (2.8) BS02 NDP 1.5.1.3
    2.1.1.45
    GO:0000166 ... Q27552 14555647
    44560 1qzf:A (2.8) BS03 UMP 1.5.1.3
    2.1.1.45
    GO:0000166 ... Q27552 14555647
    44561 1qzf:B (2.8) BS01 UMP 1.5.1.3
    2.1.1.45
    GO:0000166 ... Q27552 14555647
    44562 1qzf:B (2.8) BS02 UMP 1.5.1.3
    2.1.1.45
    GO:0000166 ... Q27552 14555647
    44563 1qzf:B (2.8) BS03 NDP 1.5.1.3
    2.1.1.45
    GO:0000166 ... Q27552 14555647
    44564 1qzf:C (2.8) BS01 UMP 1.5.1.3
    2.1.1.45
    GO:0000166 ... Q27552 14555647
    44565 1qzf:C (2.8) BS02 NDP 1.5.1.3
    2.1.1.45
    GO:0000166 ... Q27552 14555647
    44566 1qzf:C (2.8) BS03 UMP 1.5.1.3
    2.1.1.45
    GO:0000166 ... Q27552 14555647
    44567 1qzf:D (2.8) BS01 UMP 1.5.1.3
    2.1.1.45
    GO:0000166 ... Q27552 14555647
    44568 1qzf:D (2.8) BS02 NDP 1.5.1.3
    2.1.1.45
    GO:0000166 ... Q27552 14555647
    44569 1qzf:E (2.8) BS01 UMP 1.5.1.3
    2.1.1.45
    GO:0000166 ... Q27552 14555647
    44570 1qzf:E (2.8) BS02 NDP 1.5.1.3
    2.1.1.45
    GO:0000166 ... Q27552 14555647
    44571 1qzg:A (1.9) BS01 dna ? GO:0000723 ... O13988 14614509
    44572 1qzg:B (1.9) BS01 dna ? GO:0000723 ... O13988 14614509
    44573 1qzg:B (1.9) BS02 TMP ? GO:0000723 ... O13988 14614509
    44574 1qzh:A (2.4) BS01 dna ? GO:0000723 ... O13988 14614509
    44575 1qzh:B (2.4) BS01 dna ? GO:0000723 ... O13988 14614509
    44576 1qzh:C (2.4) BS01 dna ? GO:0000723 ... O13988 14614509
    44577 1qzh:D (2.4) BS01 dna ? GO:0000723 ... O13988 14614509
    44578 1qzh:E (2.4) BS01 dna ? GO:0000723 ... O13988 14614509
    44579 1qzh:E (2.4) BS02 dna ? GO:0000723 ... O13988 14614509
    44580 1qzh:F (2.4) BS01 dna ? GO:0000723 ... O13988 14614509
    44581 1qzh:F (2.4) BS02 dna ? GO:0000723 ... O13988 14614509
    44582 1qzr:A (1.9) BS01 ANP 5.6.2.2 GO:0003677 ... P06786 12963818
    44583 1qzr:A (1.9) BS02 CDX 5.6.2.2 GO:0003677 ... P06786 12963818
    44584 1qzr:B (1.9) BS01 CDX 5.6.2.2 GO:0003677 ... P06786 12963818
    44585 1qzr:B (1.9) BS02 ANP 5.6.2.2 GO:0003677 ... P06786 12963818
    44586 1qzu:A (2.91) BS01 FMN 4.1.1.36 GO:0003824 ... Q96CD2 14501115
    44587 1qzu:B (2.91) BS01 FMN 4.1.1.36 GO:0003824 ... Q96CD2 14501115
    44588 1qzu:C (2.91) BS01 FMN 4.1.1.36 GO:0003824 ... Q96CD2 14501115
    44589 1qzu:D (2.91) BS01 FMN 4.1.1.36 GO:0003824 ... Q96CD2 14501115
    44590 1qzv:A (4.44) BS01 PQN N/A N/A N/A 14668855
    44591 1qzv:C (4.44) BS01 SF4 N/A N/A N/A 14668855
    44592 1qzv:C (4.44) BS02 SF4 N/A N/A N/A 14668855
    44593 1qzv:P (4.44) BS01 PQN N/A N/A N/A 14668855
    44594 1qzv:R (4.44) BS01 SF4 N/A N/A N/A 14668855
    44595 1qzv:R (4.44) BS02 SF4 N/A N/A N/A 14668855
    44596 1qzw:A (4.1) BS01 rna 3.6.5.4 GO:0003723 ... Q97ZE7 14657338
    44597 1qzw:C (4.1) BS01 rna 3.6.5.4 GO:0003723 ... Q97ZE7 14657338
    44598 1qzw:E (4.1) BS01 rna 3.6.5.4 GO:0003723 ... Q97ZE7 14657338
    44599 1qzw:G (4.1) BS01 rna 3.6.5.4 GO:0003723 ... Q97ZE7 14657338
    44600 1qzy:A (1.6) BS01 CO 3.4.11.18 GO:0003723 ... P50579 14534293

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).