SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 > >>
    Go to page

    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    4401 1bc3:A (1.95) BS02 CA ? GO:0001786 ... P14668 9609693
    4402 1bc3:A (1.95) BS03 CA ? GO:0001786 ... P14668 9609693
    4403 1bc3:A (1.95) BS04 CA ? GO:0001786 ... P14668 9609693
    4404 1bc3:A (1.95) BS05 CA ? GO:0001786 ... P14668 9609693
    4405 1bc5:A (2.2) BS01 peptide 2.1.1.80 GO:0006935 ... P07801 9628482
    4406 1bc5:A (2.2) BS02 SAH 2.1.1.80 GO:0006935 ... P07801 9628482
    4407 1bc6:A (-1.00) BS01 F3S ? GO:0009055 ... Q45560 9657695
    4408 1bc6:A (-1.00) BS02 SF4 ? GO:0009055 ... Q45560 9657695
    4409 1bc7:C (2.01) BS01 dna ? GO:0003700 ... P28324 9734357
    4410 1bc7:C (2.01) BS02 dna ? GO:0003700 ... P28324 9734357
    4411 1bc8:C (1.93) BS01 dna ? GO:0003700 ... P28324 9734357
    4412 1bc8:C (1.93) BS02 dna ? GO:0003700 ... P28324 9734357
    4413 1bcc:C (3.16) BS01 HEM 1.10.2.2 GO:0005737 ... P18946 9565029
    4414 1bcc:C (3.16) BS02 HEM 1.10.2.2 GO:0005737 ... P18946 9565029
    4415 1bcc:C (3.16) BS03 U10 1.10.2.2 GO:0005737 ... P18946 9565029
    4416 1bcc:D (3.16) BS01 HEM 7.1.1.8 GO:0009055 ... P00125 9565029
    4417 1bcc:E (3.16) BS01 FES 7.1.1.8 GO:0008121 ... P13272 9565029
    4418 1bcd:A (1.9) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 8070585
    4419 1bcd:A (1.9) BS02 FMS 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 8070585 MOAD: Kd=2nM
    BindingDB: Kd=130nM, IC50=13nM
    4420 1bcf:A (2.9) BS01 MN 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    4421 1bcf:A (2.9) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    4422 1bcf:A (2.9) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    4423 1bcf:B (2.9) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    4424 1bcf:B (2.9) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    4425 1bcf:B (2.9) BS03 MN 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    4426 1bcf:C (2.9) BS01 MN 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    4427 1bcf:C (2.9) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    4428 1bcf:C (2.9) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    4429 1bcf:D (2.9) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    4430 1bcf:D (2.9) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    4431 1bcf:D (2.9) BS03 MN 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    4432 1bcf:E (2.9) BS01 MN 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    4433 1bcf:E (2.9) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    4434 1bcf:E (2.9) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    4435 1bcf:F (2.9) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    4436 1bcf:F (2.9) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    4437 1bcf:F (2.9) BS03 MN 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    4438 1bcf:G (2.9) BS01 MN 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    4439 1bcf:G (2.9) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    4440 1bcf:G (2.9) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    4441 1bcf:H (2.9) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    4442 1bcf:H (2.9) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    4443 1bcf:H (2.9) BS03 MN 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    4444 1bcf:I (2.9) BS01 MN 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    4445 1bcf:I (2.9) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    4446 1bcf:I (2.9) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    4447 1bcf:J (2.9) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    4448 1bcf:J (2.9) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    4449 1bcf:J (2.9) BS03 MN 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    4450 1bcf:K (2.9) BS01 MN 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    4451 1bcf:K (2.9) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    4452 1bcf:K (2.9) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    4453 1bcf:L (2.9) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    4454 1bcf:L (2.9) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    4455 1bcf:L (2.9) BS03 MN 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    4456 1bch:1 (2.0) BS01 CA ? N/A P19999 9677372
    4457 1bch:1 (2.0) BS02 CA ? N/A P19999 9677372
    4458 1bch:2 (2.0) BS01 CA ? N/A P19999 9677372
    4459 1bch:2 (2.0) BS02 CA ? N/A P19999 9677372
    4460 1bch:2 (2.0) BS03 CA ? N/A P19999 9677372
    4461 1bch:3 (2.0) BS01 CA ? N/A P19999 9677372
    4462 1bch:3 (2.0) BS02 CA ? N/A P19999 9677372
    4463 1bci:A (-1.00) BS01 CA 3.1.1.4
    3.1.1.5
    GO:0005509 ... P47712 9665851
    4464 1bci:A (-1.00) BS02 CA 3.1.1.4
    3.1.1.5
    GO:0005509 ... P47712 9665851
    4465 1bcj:1 (2.1) BS01 CA ? N/A P19999 9677372
    4466 1bcj:1 (2.1) BS02 CA ? N/A P19999 9677372
    4467 1bcj:1 (2.1) BS03 CA ? N/A P19999 9677372
    4468 1bcj:2 (2.1) BS01 CA ? N/A P19999 9677372
    4469 1bcj:2 (2.1) BS02 CA ? N/A P19999 9677372
    4470 1bcj:2 (2.1) BS03 CA ? N/A P19999 9677372
    4471 1bcj:3 (2.1) BS01 CA ? N/A P19999 9677372
    4472 1bcj:3 (2.1) BS02 CA ? N/A P19999 9677372
    4473 1bcj:3 (2.1) BS03 CA ? N/A P19999 9677372
    4474 1bck:A (1.8) BS01 peptide 5.2.1.8 GO:0000413 ... P62937 9769216
    4475 1bcp:C (2.7) BS01 ATP 2.4.2.- GO:0005576 ... P04979 8637000
    4476 1bcp:E (2.7) BS01 ATP 2.4.2.- GO:0005576 ... P0A3R5 8637000
    4477 1bcp:F (2.7) BS01 ATP 2.4.2.- GO:0005576 ... P04981 8637000
    4478 1bcp:I (2.7) BS01 ATP 2.4.2.- GO:0005576 ... P04979 8637000
    4479 1bcp:K (2.7) BS01 ATP 2.4.2.- GO:0005576 ... P0A3R5 8637000
    4480 1bcp:L (2.7) BS01 ATP 2.4.2.- GO:0005576 ... P04981 8637000
    4481 1bcr:A (2.5) BS01 peptide 3.4.16.6 GO:0004185 ... P08819 8636973
    4482 1bcr:A (2.5) BS02 ARG 3.4.16.6 GO:0004185 ... P08819 8636973
    4483 1bcs:A (2.08) BS01 peptide 3.4.16.6 GO:0004185 ... P08819 8636973
    4484 1bcs:A (2.08) BS02 ARG 3.4.16.6 GO:0004185 ... P08819 8636973
    4485 1bcs:B (2.08) BS01 peptide 3.4.16.6 GO:0004185 ... P08819 8636973
    4486 1bcu:H (2.0) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 9559654
    4487 1bcu:H (2.0) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 9559654
    4488 1bcu:H (2.0) BS03 PRL 3.4.21.5 GO:0004252 ... P00734 9559654 MOAD: Kd=0.53mM
    BindingDB: IC50=12000nM
    4489 1bcw:A (2.1) BS01 CA ? GO:0001786 ... P14668 9609693
    4490 1bcw:A (2.1) BS02 CA ? GO:0001786 ... P14668 9609693
    4491 1bcw:A (2.1) BS03 CA ? GO:0001786 ... P14668 9609693
    4492 1bcw:A (2.1) BS04 CA ? GO:0001786 ... P14668 9609693
    4493 1bcw:A (2.1) BS05 CA ? GO:0001786 ... P14668 9609693
    4494 1bcx:A (1.81) BS01 XYP 3.2.1.8 GO:0004553 ... P09850 8019418
    4495 1bcx:A (1.81) BS02 XYP 3.2.1.8 GO:0004553 ... P09850 8019418
    4496 1bcy:A (1.95) BS01 CA ? GO:0001786 ... P14668 9609693
    4497 1bcy:A (1.95) BS02 CA ? GO:0001786 ... P14668 9609693
    4498 1bcy:A (1.95) BS03 CA ? GO:0001786 ... P14668 9609693
    4499 1bcy:A (1.95) BS04 CA ? GO:0001786 ... P14668 9609693
    4500 1bcy:A (1.95) BS05 CA ? GO:0001786 ... P14668 9609693
    4501 1bcz:A (2.2) BS01 CA ? GO:0001786 ... P14668 9609693
    4502 1bcz:A (2.2) BS02 CA ? GO:0001786 ... P14668 9609693
    4503 1bcz:A (2.2) BS03 CA ? GO:0001786 ... P14668 9609693
    4504 1bcz:A (2.2) BS04 CA ? GO:0001786 ... P14668 9609693
    4505 1bcz:A (2.2) BS05 CA ? GO:0001786 ... P14668 9609693
    4506 1bd0:A (1.6) BS01 IN5 5.1.1.1 GO:0003824 ... P10724 9671513
    4507 1bd0:A (1.6) BS02 IN5 5.1.1.1 GO:0003824 ... P10724 9671513
    4508 1bd0:B (1.6) BS01 IN5 5.1.1.1 GO:0003824 ... P10724 9671513
    4509 1bd0:B (1.6) BS02 IN5 5.1.1.1 GO:0003824 ... P10724 9671513
    4510 1bd2:A (2.5) BS01 peptide ? N/A P04439 9586631
    4511 1bd2:D (2.5) BS01 peptide ? GO:0005886 ... P01848
    P04437
    9586631
    4512 1bd2:E (2.5) BS01 peptide ? N/A A0A0K0K1A5
    A0A5B9
    9586631
    4513 1bd3:A (1.93) BS01 PO4 2.4.2.9 GO:0004845 ... Q26998 9628859
    4514 1bd3:B (1.93) BS01 PO4 2.4.2.9 GO:0004845 ... Q26998 9628859
    4515 1bd3:B (1.93) BS02 PO4 2.4.2.9 GO:0004845 ... Q26998 9628859
    4516 1bd3:C (1.93) BS01 PO4 2.4.2.9 GO:0004845 ... Q26998 9628859
    4517 1bd3:C (1.93) BS02 PO4 2.4.2.9 GO:0004845 ... Q26998 9628859
    4518 1bd4:A (2.2) BS01 PO4 2.4.2.9 GO:0004845 ... Q26998 9628859
    4519 1bd4:A (2.2) BS02 URA 2.4.2.9 GO:0004845 ... Q26998 9628859
    4520 1bd4:B (2.2) BS01 PO4 2.4.2.9 GO:0004845 ... Q26998 9628859
    4521 1bd4:B (2.2) BS02 PO4 2.4.2.9 GO:0004845 ... Q26998 9628859
    4522 1bd4:B (2.2) BS03 URA 2.4.2.9 GO:0004845 ... Q26998 9628859
    4523 1bd4:C (2.2) BS01 PO4 2.4.2.9 GO:0004845 ... Q26998 9628859
    4524 1bd4:C (2.2) BS02 PO4 2.4.2.9 GO:0004845 ... Q26998 9628859
    4525 1bd4:C (2.2) BS03 URA 2.4.2.9 GO:0004845 ... Q26998 9628859
    4526 1bd4:D (2.2) BS01 PO4 2.4.2.9 GO:0004845 ... Q26998 9628859
    4527 1bd4:D (2.2) BS02 PO4 2.4.2.9 GO:0004845 ... Q26998 9628859
    4528 1bd4:D (2.2) BS03 URA 2.4.2.9 GO:0004845 ... Q26998 9628859
    4529 1bd6:A (-1.00) BS01 F3S ? GO:0009055 ... Q45560 9657695
    4530 1bd6:A (-1.00) BS02 SF4 ? GO:0009055 ... Q45560 9657695
    4531 1bda:A (3.35) BS01 2Z0 3.4.21.68 GO:0004252 ... P00750 9305622
    4532 1bda:B (3.35) BS01 2Z0 3.4.21.68 GO:0004252 ... P00750 9305622
    4533 1bdb:A (2.0) BS01 NAD 1.3.1.56 GO:0016491 ... P47227 9655331
    4534 1bdg:A (2.6) BS01 GLC 2.7.1.1 GO:0001678 ... Q26609 9665168
    4535 1bdh:A (2.7) BS01 dna ? GO:0000976 ... P0ACP7 N/A
    4536 1bdh:A (2.7) BS02 HPA ? GO:0000976 ... P0ACP7 N/A
    4537 1bdi:A (3.0) BS01 dna ? GO:0000976 ... P0ACP7 N/A
    4538 1bdi:A (3.0) BS02 HPA ? GO:0000976 ... P0ACP7 N/A
    4539 1bdj:A (2.68) BS01 SO4 ? GO:0000156 ... P0AE67 10393292
    4540 1bdl:A (2.8) BS01 IM1 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P04587 9692985
    4541 1bdl:B (2.8) BS01 IM1 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P04587 9692985
    4542 1bdm:A (1.8) BS01 NAX 1.1.1.37 GO:0003824 ... P10584 8471603
    4543 1bdm:B (1.8) BS01 NAX 1.1.1.37 GO:0003824 ... P10584 8471603
    4544 1bdo:A (1.8) BS01 BTN 6.4.1.2 GO:0003989 ... P0ABD8 8747466
    4545 1bdq:A (2.5) BS01 IM1 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P04587 9692985
    4546 1bdq:B (2.5) BS01 IM1 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P04587 9692985 MOAD: Ki=460nM
    4547 1bdr:A (2.8) BS01 IM1 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P04587 9692985
    4548 1bdr:B (2.8) BS01 IM1 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P04587 9692985
    4549 1bdt:A (2.5) BS01 dna ? GO:0003677 ... P03050 9927650
    4550 1bdt:A (2.5) BS02 dna ? GO:0003677 ... P03050 9927650
    4551 1bdt:B (2.5) BS01 dna ? GO:0003677 ... P03050 9927650
    4552 1bdt:B (2.5) BS02 dna ? GO:0003677 ... P03050 9927650
    4553 1bdt:C (2.5) BS01 dna ? GO:0003677 ... P03050 9927650
    4554 1bdt:C (2.5) BS02 dna ? GO:0003677 ... P03050 9927650
    4555 1bdt:D (2.5) BS01 dna ? GO:0003677 ... P03050 9927650
    4556 1bdt:D (2.5) BS02 dna ? GO:0003677 ... P03050 9927650
    4557 1bdu:A (2.1) BS01 DUR 2.1.1.45 GO:0000287 ... P0A884 9687366
    4558 1bdv:A (2.8) BS01 dna ? GO:0003677 ... P03050 9927650
    4559 1bdv:A (2.8) BS02 dna ? GO:0003677 ... P03050 9927650
    4560 1bdv:B (2.8) BS01 dna ? GO:0003677 ... P03050 9927650
    4561 1bdv:B (2.8) BS02 dna ? GO:0003677 ... P03050 9927650
    4562 1bdv:C (2.8) BS01 dna ? GO:0003677 ... P03050 9927650
    4563 1bdv:C (2.8) BS02 dna ? GO:0003677 ... P03050 9927650
    4564 1bdv:D (2.8) BS01 dna ? GO:0003677 ... P03050 9927650
    4565 1bdv:D (2.8) BS02 dna ? GO:0003677 ... P03050 9927650
    4566 1be0:A (1.96) BS01 ACY 3.8.1.5 GO:0003824 ... P22643 9790663
    4567 1be3:A (3.0) BS01 peptide 1.10.2.2 GO:0005739 ... P31800 9651245
    4568 1be3:C (3.0) BS01 HEM 1.10.2.2 GO:0005743 ... P00157 9651245
    4569 1be3:C (3.0) BS02 HEM 1.10.2.2 GO:0005743 ... P00157 9651245
    4570 1be3:D (3.0) BS01 HEC 7.1.1.8 GO:0009055 ... P00125 9651245
    4571 1be3:E (3.0) BS01 FES 7.1.1.8 GO:0008121 ... P13272 9651245
    4572 1be3:J (3.0) BS01 peptide 1.10.2.2 GO:0005739 ... P00130 9651245
    4573 1be4:A (2.4) BS01 PCG 2.7.4.6 GO:0000287 ... P52175 9760230
    4574 1be4:B (2.4) BS01 PCG 2.7.4.6 GO:0000287 ... P52175 9760230
    4575 1be4:C (2.4) BS01 PCG 2.7.4.6 GO:0000287 ... P52175 9760230
    4576 1be6:A (2.15) BS01 CA 3.4.21.62 GO:0004252 ... P00780 9789015
    4577 1be6:A (2.15) BS02 CCN 3.4.21.62 GO:0004252 ... P00780 9789015
    4578 1be6:A (2.15) BS03 CCN 3.4.21.62 GO:0004252 ... P00780 9789015
    4579 1be7:A (1.65) BS01 FE ? GO:0005506 ... P00268 N/A
    4580 1be8:A (2.2) BS01 CA 3.4.21.62 GO:0004252 ... P00780 9789015
    4581 1be9:A (1.82) BS01 peptide ? N/A P31016 8674113
    4582 1beh:A (1.75) BS01 CAC ? GO:0003723 ... P30086 9782050
    4583 1beh:B (1.75) BS01 CAC ? GO:0003723 ... P30086 9782050
    4584 1bej:A (2.4) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 N/A
    4585 1bek:A (2.2) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 N/A
    4586 1bel:A (1.6) BS01 SO4 4.6.1.18 GO:0003676 ... P61823 15299907
    4587 1bel:A (1.6) BS02 MOH 4.6.1.18 GO:0003676 ... P61823 15299907
    4588 1bem:A (2.2) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 N/A
    4589 1ben:B (1.4) BS01 peptide ? GO:0005179 ... P01308 8844841
    4590 1ben:B (1.4) BS02 peptide ? GO:0005179 ... P01308 8844841
    4591 1bep:A (2.2) BS01 CCH 1.11.1.5 GO:0004601 ... P00431 N/A
    4592 1beq:A (2.16) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 N/A
    4593 1bes:A (2.0) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 N/A
    4594 1beu:B (1.9) BS01 PLS 4.2.1.20 GO:0000162 ... P0A2K1 9692955
    4595 1bev:1 (3.0) BS01 MYR 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    N/A P12915 7773791
    4596 1bex:A (2.3) BS01 CU ? GO:0005507 ... P00282 10089343
    4597 1bex:A (2.3) BS02 CU ? GO:0005507 ... P00282 10089343
    4598 1bex:A (2.3) BS03 RBU ? GO:0005507 ... P00282 10089343
    4599 1bex:B (2.3) BS01 RBU ? GO:0005507 ... P00282 10089343
    4600 1bex:B (2.3) BS02 CU ? GO:0005507 ... P00282 10089343

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).