SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    464601 6ff2:B (1.3) BS02 CU1 ? GO:0005507 ... Q2FV63 N/A
    464602 6ff4:7 (3.4) BS01 rna ? GO:0000245 ... Q15428 29361316
    464603 6ff4:7 (3.4) BS02 rna ? GO:0000245 ... Q15428 29361316
    464604 6ff4:7 (3.4) BS03 rna ? GO:0000245 ... Q15428 29361316
    464605 6ff4:7 (3.4) BS04 rna ? GO:0000245 ... Q15428 29361316
    464606 6ff4:8 (3.4) BS01 rna ? GO:0000398 ... Q13435 29361316
    464607 6ff4:8 (3.4) BS02 rna ? GO:0000398 ... Q13435 29361316
    464608 6ff4:A (3.4) BS01 rna ? GO:0000244 ... Q6P2Q9 29361316
    464609 6ff4:A (3.4) BS02 rna ? GO:0000244 ... Q6P2Q9 29361316
    464610 6ff4:A (3.4) BS03 rna ? GO:0000244 ... Q6P2Q9 29361316
    464611 6ff4:A (3.4) BS04 rna ? GO:0000244 ... Q6P2Q9 29361316
    464612 6ff4:A (3.4) BS05 IHP ? GO:0000244 ... Q6P2Q9 29361316
    464613 6ff4:B (3.4) BS01 GTP ? GO:0000398 ... Q15029 29361316
    464614 6ff4:C (3.4) BS01 rna ? GO:0000122 ... Q13573 29361316
    464615 6ff4:C (3.4) BS02 rna ? GO:0000122 ... Q13573 29361316
    464616 6ff4:D (3.4) BS01 rna ? GO:0000398 ... O43660 29361316
    464617 6ff4:E (3.4) BS01 rna ? GO:0000398 ... O60508 29361316
    464618 6ff4:L (3.4) BS01 rna ? GO:0000077 ... Q99459 29361316
    464619 6ff4:L (3.4) BS02 rna ? GO:0000077 ... Q99459 29361316
    464620 6ff4:O (3.4) BS01 rna ? GO:0000245 ... Q9BZJ0 29361316
    464621 6ff4:P (3.4) BS01 rna ? GO:0000398 ... Q9NW64 29361316
    464622 6ff4:P (3.4) BS02 rna ? GO:0000398 ... Q9NW64 29361316
    464623 6ff4:P (3.4) BS03 ZN ? GO:0000398 ... Q9NW64 29361316
    464624 6ff4:P (3.4) BS04 ZN ? GO:0000398 ... Q9NW64 29361316
    464625 6ff4:P (3.4) BS05 ZN ? GO:0000398 ... Q9NW64 29361316
    464626 6ff4:Q (3.4) BS01 rna ? GO:0000398 ... P41223 29361316
    464627 6ff4:Q (3.4) BS02 ZN ? GO:0000398 ... P41223 29361316
    464628 6ff4:Q (3.4) BS03 ZN ? GO:0000398 ... P41223 29361316
    464629 6ff4:Q (3.4) BS04 ZN ? GO:0000398 ... P41223 29361316
    464630 6ff4:R (3.4) BS01 rna ? GO:0000398 ... Q9P013 29361316
    464631 6ff4:R (3.4) BS02 rna ? GO:0000398 ... Q9P013 29361316
    464632 6ff4:S (3.4) BS01 rna ? GO:0000398 ... Q9UQ35 29361316
    464633 6ff4:t (3.4) BS01 rna 2.3.2.27 GO:0000398 ... O15541 29361316
    464634 6ff4:t (3.4) BS02 ZN 2.3.2.27 GO:0000398 ... O15541 29361316
    464635 6ff4:u (3.4) BS01 rna ? GO:0000245 ... O75533 29361316
    464636 6ff4:u (3.4) BS02 rna ? GO:0000245 ... O75533 29361316
    464637 6ff4:y (3.4) BS01 rna ? GO:0000398 ... Q7RTV0 29361316
    464638 6ff4:y (3.4) BS02 rna ? GO:0000398 ... Q7RTV0 29361316
    464639 6ff4:y (3.4) BS03 ZN ? GO:0000398 ... Q7RTV0 29361316
    464640 6ff4:y (3.4) BS04 ZN ? GO:0000398 ... Q7RTV0 29361316
    464641 6ff4:y (3.4) BS05 ZN ? GO:0000398 ... Q7RTV0 29361316
    464642 6ff5:A (1.74) BS01 HEC ? GO:0005739 ... P62894 29516298
    464643 6ff5:A (1.74) BS02 NO3 ? GO:0005739 ... P62894 29516298
    464644 6ff5:A (1.74) BS03 NO3 ? GO:0005739 ... P62894 29516298
    464645 6ff5:A (1.74) BS04 SO4 ? GO:0005739 ... P62894 29516298
    464646 6ff7:7 (4.5) BS01 rna ? GO:0000245 ... Q15428 29361316
    464647 6ff7:7 (4.5) BS02 rna ? GO:0000245 ... Q15428 29361316
    464648 6ff7:8 (4.5) BS01 rna ? GO:0000398 ... Q13435 29361316
    464649 6ff7:9 (4.5) BS01 rna ? GO:0000375 ... Q12874 29361316
    464650 6ff7:A (4.5) BS01 rna ? GO:0000244 ... Q6P2Q9 29361316
    464651 6ff7:A (4.5) BS02 rna ? GO:0000244 ... Q6P2Q9 29361316
    464652 6ff7:A (4.5) BS03 rna ? GO:0000244 ... Q6P2Q9 29361316
    464653 6ff7:A (4.5) BS04 rna ? GO:0000244 ... Q6P2Q9 29361316
    464654 6ff7:B (4.5) BS01 GTP ? GO:0000398 ... Q15029 29361316
    464655 6ff7:C (4.5) BS01 rna ? GO:0000122 ... Q13573 29361316
    464656 6ff7:C (4.5) BS02 rna ? GO:0000122 ... Q13573 29361316
    464657 6ff7:P (4.5) BS01 rna ? GO:0000398 ... Q9NW64 29361316
    464658 6ff7:P (4.5) BS02 rna ? GO:0000398 ... Q9NW64 29361316
    464659 6ff7:Q (4.5) BS01 rna ? GO:0000398 ... P41223 29361316
    464660 6ff7:Q (4.5) BS02 ZN ? GO:0000398 ... P41223 29361316
    464661 6ff7:Q (4.5) BS03 ZN ? GO:0000398 ... P41223 29361316
    464662 6ff7:R (4.5) BS01 rna ? GO:0000398 ... Q9P013 29361316
    464663 6ff7:S (4.5) BS01 rna ? GO:0000398 ... Q9UQ35 29361316
    464664 6ff7:r (4.5) BS01 ADP 3.6.4.13 GO:0000354 ... O75643 29361316
    464665 6ff7:r (4.5) BS02 ADP 3.6.4.13 GO:0000354 ... O75643 29361316
    464666 6ff7:t (4.5) BS01 rna 2.3.2.27 GO:0000398 ... O15541 29361316
    464667 6ff7:u (4.5) BS01 rna ? GO:0000245 ... O75533 29361316
    464668 6ff7:u (4.5) BS02 rna ? GO:0000245 ... O75533 29361316
    464669 6ff8:A (2.13) BS01 GTP ? GO:0003924 ... Q13637 31552791 MOAD: Kd=1.2uM
    464670 6ff8:A (2.13) BS02 MG ? GO:0003924 ... Q13637 31552791
    464671 6ff8:B (2.13) BS01 GTP ? GO:0003924 ... Q13637 31552791 MOAD: Kd=1.2uM
    464672 6ff8:B (2.13) BS02 MG ? GO:0003924 ... Q13637 31552791
    464673 6ff9:A (2.0) BS01 ZN ? GO:0000976 ... P04637 29652801
    464674 6ff9:B (2.0) BS01 ZN ? GO:0000976 ... P04637 29652801
    464675 6ff9:C (2.0) BS01 ZN ? GO:0000976 ... P04637 29652801
    464676 6ff9:D (2.0) BS01 ZN ? GO:0000976 ... P04637 29652801
    464677 6ffb:A (1.65) BS01 NAD 1.1.1.62 GO:0004303 ... Q9BPX1 30836176
    464678 6ffb:A (1.65) BS02 BGC 1.1.1.62 GO:0004303 ... Q9BPX1 30836176
    464679 6ffb:A (1.65) BS03 F45 1.1.1.62 GO:0004303 ... Q9BPX1 30836176 BindingDB: Ki=7.0nM
    464680 6ffc:A (3.56) BS01 BWQ 7.6.2.2 GO:0005515 ... Q9UNQ0 29610494
    464681 6ffc:A (3.56) BS02 BWQ 7.6.2.2 GO:0005515 ... Q9UNQ0 29610494
    464682 6ffc:B (3.56) BS01 BWQ 7.6.2.2 GO:0005515 ... Q9UNQ0 29610494
    464683 6ffc:B (3.56) BS02 BWQ 7.6.2.2 GO:0005515 ... Q9UNQ0 29610494
    464684 6ffd:A (1.83) BS01 D7T ? N/A O60885 N/A BindingDB: IC50=15849nM
    464685 6ffe:A (1.76) BS01 D7Q ? N/A P25440 29656650
    464686 6fff:A (1.67) BS01 D7H ? N/A P25440 29656650 BindingDB: IC50=100nM
    464687 6ffg:A (1.59) BS01 D7B ? N/A P25440 29656650 BindingDB: IC50=2512nM, Kd=32nM
    464688 6ffh:A (2.65) BS01 D7W 3.2.1.17 GO:0003796 ... P00720
    P41594
    29455526
    464689 6ffi:A (2.2) BS01 D8B 3.2.1.17 GO:0003796 ... P00720
    P41594
    29455526 MOAD: ic50=8nM
    464690 6ffk:A (1.94) BS01 D7Z 1.15.1.1 GO:0000302 ... P00441 30429951 MOAD: Kd=37uM
    464691 6ffk:B (1.94) BS01 D7Z 1.15.1.1 GO:0000302 ... P00441 30429951 MOAD: Kd=37uM
    464692 6ffk:F (1.94) BS01 D7Z 1.15.1.1 GO:0000302 ... P00441 30429951 MOAD: Kd=37uM
    464693 6ffl:A (1.707) BS01 GLC ? GO:0008643 ... Q6MNM0 30193862
    464694 6ffl:A (1.707) BS02 GLC ? GO:0008643 ... Q6MNM0 30193862
    464695 6ffl:A (1.707) BS03 GLC ? GO:0008643 ... Q6MNM0 30193862
    464696 6ffn:A (1.75) BS01 D8K 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0004197 ... P04936 29433930
    464697 6ffs:A (1.86) BS01 D8E 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0004197 ... P04936 29433930
    464698 6fft:A (2.0) BS01 3MI ? GO:0001523 ... P02766 30804345 BindingDB: IC50=3100nM, Kd=274nM
    464699 6fft:B (2.0) BS01 3MI ? GO:0001523 ... P02766 30804345 BindingDB: IC50=3100nM, Kd=274nM
    464700 6ffv:A () BS01 B12 N/A N/A N/A N/A
    464701 6ffw:A (1.495) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 N/A
    464702 6ffw:A (1.495) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 N/A
    464703 6ffw:A (1.495) BS03 D6K 3.1.8.1 GO:0004063 ... P0A434 N/A
    464704 6ffw:B (1.495) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 N/A
    464705 6ffw:B (1.495) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 N/A
    464706 6ffx:A (2.5) BS01 ZN N/A GO:0008270 ... N/A 29384657
    464707 6ffx:A (2.5) BS02 ZN N/A GO:0008270 ... N/A 29384657
    464708 6ffx:A (2.5) BS03 NAD N/A GO:0008270 ... N/A 29384657
    464709 6ffx:B (2.5) BS01 ZN N/A GO:0008270 ... N/A 29384657
    464710 6ffx:B (2.5) BS02 ZN N/A GO:0008270 ... N/A 29384657
    464711 6ffx:B (2.5) BS03 NAD N/A GO:0008270 ... N/A 29384657
    464712 6ffx:C (2.5) BS01 ZN N/A GO:0008270 ... N/A 29384657
    464713 6ffx:C (2.5) BS02 ZN N/A GO:0008270 ... N/A 29384657
    464714 6ffx:C (2.5) BS03 NAD N/A GO:0008270 ... N/A 29384657
    464715 6ffx:D (2.5) BS01 ZN N/A GO:0008270 ... N/A 29384657
    464716 6ffx:D (2.5) BS02 ZN N/A GO:0008270 ... N/A 29384657
    464717 6ffx:D (2.5) BS03 NAD N/A GO:0008270 ... N/A 29384657
    464718 6ffz:A (1.71) BS01 ZN N/A GO:0008270 ... N/A 29384657
    464719 6ffz:A (1.71) BS02 ZN N/A GO:0008270 ... N/A 29384657
    464720 6ffz:A (1.71) BS03 NAD N/A GO:0008270 ... N/A 29384657
    464721 6ffz:B (1.71) BS01 ZN N/A GO:0008270 ... N/A 29384657
    464722 6ffz:B (1.71) BS02 ZN N/A GO:0008270 ... N/A 29384657
    464723 6ffz:B (1.71) BS03 NAD N/A GO:0008270 ... N/A 29384657
    464724 6ffz:C (1.71) BS01 ZN N/A GO:0008270 ... N/A 29384657
    464725 6ffz:C (1.71) BS02 ZN N/A GO:0008270 ... N/A 29384657
    464726 6ffz:C (1.71) BS03 NAD N/A GO:0008270 ... N/A 29384657
    464727 6ffz:D (1.71) BS01 ZN N/A GO:0008270 ... N/A 29384657
    464728 6ffz:D (1.71) BS02 ZN N/A GO:0008270 ... N/A 29384657
    464729 6ffz:D (1.71) BS03 NAD N/A GO:0008270 ... N/A 29384657
    464730 6fg0:A (1.74) BS01 ZN N/A GO:0008270 ... N/A N/A
    464731 6fg0:A (1.74) BS02 ZN N/A GO:0008270 ... N/A N/A
    464732 6fg0:A (1.74) BS03 NAD N/A GO:0008270 ... N/A N/A
    464733 6fg0:B (1.74) BS01 ZN N/A GO:0008270 ... N/A N/A
    464734 6fg0:B (1.74) BS02 ZN N/A GO:0008270 ... N/A N/A
    464735 6fg0:B (1.74) BS03 NAD N/A GO:0008270 ... N/A N/A
    464736 6fg0:C (1.74) BS01 ZN N/A GO:0008270 ... N/A N/A
    464737 6fg0:C (1.74) BS02 ZN N/A GO:0008270 ... N/A N/A
    464738 6fg0:C (1.74) BS03 NAD N/A GO:0008270 ... N/A N/A
    464739 6fg0:D (1.74) BS01 ZN N/A GO:0008270 ... N/A N/A
    464740 6fg0:D (1.74) BS02 ZN N/A GO:0008270 ... N/A N/A
    464741 6fg0:D (1.74) BS03 NAD N/A GO:0008270 ... N/A N/A
    464742 6fg3:A (7.3) BS01 ZN ? GO:0003151 ... P11716 30078641
    464743 6fg3:A (7.3) BS02 CA ? GO:0003151 ... P11716 30078641
    464744 6fg3:B (7.3) BS01 ZN ? GO:0003151 ... P11716 30078641
    464745 6fg3:B (7.3) BS02 CA ? GO:0003151 ... P11716 30078641
    464746 6fg3:C (7.3) BS01 ZN ? GO:0003151 ... P11716 30078641
    464747 6fg3:C (7.3) BS02 CA ? GO:0003151 ... P11716 30078641
    464748 6fg3:D (7.3) BS01 ZN ? GO:0003151 ... P11716 30078641
    464749 6fg3:D (7.3) BS02 CA ? GO:0003151 ... P11716 30078641
    464750 6fg5:A (2.35) BS01 ZN N/A GO:0004114 ... N/A N/A
    464751 6fg5:B (2.35) BS01 ZN N/A GO:0004114 ... N/A N/A
    464752 6fg6:A (2.401) BS01 D8Q ? N/A Q9UIF9 29770599
    464753 6fg7:A (1.9) BS01 FUC ? N/A Q9LSI9 29735985
    464754 6fga:A (2.82) BS01 ZN 2.3.2.27 GO:0004842 ... P19474 31160341
    464755 6fga:A (2.82) BS02 ZN 2.3.2.27 GO:0004842 ... P19474 31160341
    464756 6fga:B (2.82) BS01 ZN 2.3.2.27 GO:0004842 ... P19474 31160341
    464757 6fga:B (2.82) BS02 ZN 2.3.2.27 GO:0004842 ... P19474 31160341
    464758 6fga:C (2.82) BS01 ZN 2.3.2.27 GO:0004842 ... P19474 31160341
    464759 6fga:C (2.82) BS02 ZN 2.3.2.27 GO:0004842 ... P19474 31160341
    464760 6fga:D (2.82) BS01 ZN 2.3.2.27 GO:0004842 ... P19474 31160341
    464761 6fga:D (2.82) BS02 ZN 2.3.2.27 GO:0004842 ... P19474 31160341
    464762 6fga:E (2.82) BS01 ZN 2.3.2.27 GO:0004842 ... P19474 31160341
    464763 6fga:E (2.82) BS02 ZN 2.3.2.27 GO:0004842 ... P19474 31160341
    464764 6fga:F (2.82) BS01 ZN 2.3.2.27 GO:0004842 ... P19474 31160341
    464765 6fga:F (2.82) BS02 ZN 2.3.2.27 GO:0004842 ... P19474 31160341
    464766 6fga:G (2.82) BS01 ZN 2.3.2.27 GO:0004842 ... P19474 31160341
    464767 6fga:G (2.82) BS02 ZN 2.3.2.27 GO:0004842 ... P19474 31160341
    464768 6fga:H (2.82) BS01 ZN 2.3.2.27 GO:0004842 ... P19474 31160341
    464769 6fga:H (2.82) BS02 ZN 2.3.2.27 GO:0004842 ... P19474 31160341
    464770 6fgc:A (1.5) BS01 ADP 2.10.1.1
    2.7.7.75
    GO:0006777 ... Q03555 30704910
    464771 6fgc:A (1.5) BS02 D95 2.10.1.1
    2.7.7.75
    GO:0006777 ... Q03555 30704910
    464772 6fgd:A (1.5) BS01 ADP 2.10.1.1
    2.7.7.75
    GO:0006777 ... Q03555 30704910
    464773 6fgd:A (1.5) BS02 D8Z 2.10.1.1
    2.7.7.75
    GO:0006777 ... Q03555 30704910
    464774 6fgf:A (2.801) BS01 EN2 ? N/A Q9UIF9 29770599
    464775 6fgg:A (1.1) BS01 D9B ? N/A Q9UIF9 29770599 MOAD: Kd=17uM
    464776 6fgh:A (2.1) BS01 6RZ ? N/A Q9UIF9 29770599
    464777 6fgi:A (2.551) BS01 D9K ? N/A Q9UIF9 29770599
    464778 6fgl:A (2.1) BS01 UO1 ? N/A Q9UIF9 29770599 MOAD: ic50=24uM
    464779 6fgn:A (-1.00) BS01 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q09472
    Q9H3D4
    30099987
    464780 6fgn:A (-1.00) BS02 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q09472
    Q9H3D4
    30099987
    464781 6fgn:A (-1.00) BS03 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q09472
    Q9H3D4
    30099987
    464782 6fgo:A (2.5) BS01 BMA ? N/A P0DOX5 29886013
    464783 6fgo:C (2.5) BS01 BMA ? N/A P0DOX5 29886013
    464784 6fgo:E (2.5) BS01 CA ? GO:0019865 ... A0A0U3TLJ6 29886013
    464785 6fgo:F (2.5) BS01 CA ? GO:0019865 ... A0A0U3TLJ6 29886013
    464786 6fgo:G (2.5) BS01 CA ? GO:0019865 ... A0A0U3TLJ6 29886013
    464787 6fgo:H (2.5) BS01 CA ? GO:0019865 ... A0A0U3TLJ6 29886013
    464788 6fgp:B (-1.00) BS01 peptide ? GO:0002407 ... P13501 29619777
    464789 6fgq:A (2.37) BS01 D9N ? GO:0003677 ... P51449 30095900 MOAD: ic50=0.014uM
    BindingDB: IC50=21nM
    464790 6fgq:B (2.37) BS01 D9N ? GO:0003677 ... P51449 30095900 MOAD: ic50=0.014uM
    BindingDB: IC50=21nM
    464791 6fgs:A (-1.00) BS01 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... O15350
    Q09472
    30099987
    464792 6fgs:A (-1.00) BS02 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... O15350
    Q09472
    30099987
    464793 6fgs:A (-1.00) BS03 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... O15350
    Q09472
    30099987
    464794 6fgt:A (2.0) BS01 D9T ? N/A Q9UIF8 29770599
    464795 6fgu:A (2.05) BS01 D9Q ? N/A Q9UIF8 29770599
    464796 6fgv:A (2.5) BS01 D9T ? N/A Q9UIF9 29770599
    464797 6fgw:A (2.725) BS01 D9Q ? N/A Q9UIF9 29770599
    464798 6fgx:A (2.9) BS01 APC 2.7.6.5 GO:0005525 ... W8U368 29391580
    464799 6fgx:B (2.9) BS01 MG 2.7.6.5 GO:0005525 ... W8U368 29391580
    464800 6fgx:B (2.9) BS02 APC 2.7.6.5 GO:0005525 ... W8U368 29391580

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).