SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    520401 6o9k:M (4.0) BS02 rna ? GO:0000027 ... P0ADY7 31108498
    520402 6o9k:N (4.0) BS01 rna ? GO:0000027 ... P0AG44 31108498
    520403 6o9k:O (4.0) BS01 rna ? GO:0002181 ... P0C018 31108498
    520404 6o9k:O (4.0) BS02 rna ? GO:0002181 ... P0C018 31108498
    520405 6o9k:P (4.0) BS01 rna ? GO:0000027 ... P0A7K6 31108498
    520406 6o9k:P (4.0) BS02 rna ? GO:0000027 ... P0A7K6 31108498
    520407 6o9k:Q (4.0) BS01 rna ? GO:0000027 ... P0A7L3 31108498
    520408 6o9k:R (4.0) BS01 rna ? GO:0002181 ... P0AG48 31108498
    520409 6o9k:S (4.0) BS01 rna ? GO:0002181 ... P61175 31108498
    520410 6o9k:T (4.0) BS01 rna ? GO:0000027 ... P0ADZ0 31108498
    520411 6o9k:U (4.0) BS01 rna ? GO:0000027 ... P60624 31108498
    520412 6o9k:V (4.0) BS01 rna ? GO:0000027 ... P68919 31108498
    520413 6o9k:V (4.0) BS02 rna ? GO:0000027 ... P68919 31108498
    520414 6o9k:Y (4.0) BS01 rna ? GO:0002181 ... P0A7Q6 31108498
    520415 6o9k:b (4.0) BS01 rna ? GO:0000028 ... P0A7V0 31108498
    520416 6o9k:c (4.0) BS01 rna ? GO:0003676 ... P0A7V3 31108498
    520417 6o9k:d (4.0) BS01 rna ? GO:0000028 ... P0A7V8 31108498
    520418 6o9k:e (4.0) BS01 rna ? GO:0000028 ... P0A7W1 31108498
    520419 6o9k:f (4.0) BS01 rna ? GO:0003735 ... P02358 31108498
    520420 6o9k:g (4.0) BS01 rna ? GO:0003723 ... P02359 31108498
    520421 6o9k:h (4.0) BS01 rna ? GO:0000028 ... P0A7W7 31108498
    520422 6o9k:i (4.0) BS01 rna ? GO:0000049 ... P0A7X3 31108498
    520423 6o9k:i (4.0) BS02 rna ? GO:0000049 ... P0A7X3 31108498
    520424 6o9k:j (4.0) BS01 rna ? GO:0000049 ... P0A7R5 31108498
    520425 6o9k:k (4.0) BS01 rna ? GO:0002181 ... P0A7R9 31108498
    520426 6o9k:l (4.0) BS01 rna ? GO:0000049 ... P0A7S3 31108498
    520427 6o9k:m (4.0) BS01 rna ? GO:0000049 ... P0A7S9 31108498
    520428 6o9k:n (4.0) BS01 rna ? GO:0003735 ... P0AG59 31108498
    520429 6o9k:o (4.0) BS01 rna ? GO:0000028 ... P0ADZ4 31108498
    520430 6o9k:o (4.0) BS02 rna ? GO:0000028 ... P0ADZ4 31108498
    520431 6o9k:p (4.0) BS01 rna ? GO:0000028 ... P0A7T3 31108498
    520432 6o9k:q (4.0) BS01 rna ? GO:0000028 ... P0AG63 31108498
    520433 6o9k:r (4.0) BS01 rna ? GO:0003735 ... P0A7T7 31108498
    520434 6o9k:s (4.0) BS01 rna ? GO:0003723 ... P0A7U3 31108498
    520435 6o9k:t (4.0) BS01 rna ? GO:0000028 ... P0A7U7 31108498
    520436 6o9k:u (4.0) BS01 rna ? GO:0003735 ... P68679 31108498
    520437 6o9k:z (4.0) BS01 rna ? GO:0003743 ... P0A705 31108498
    520438 6o9k:z (4.0) BS02 rna ? GO:0003743 ... P0A705 31108498
    520439 6o9k:z (4.0) BS03 rna ? GO:0003743 ... P0A705 31108498
    520440 6o9l:0 (7.2) BS01 SF4 3.6.4.12 GO:0000439 ... P18074 31110295
    520441 6o9l:4 (7.2) BS01 ZN ? GO:0000438 ... Q13889 31110295
    520442 6o9l:6 (7.2) BS01 ZN ? GO:0000438 ... Q13888 31110295
    520443 6o9l:6 (7.2) BS02 ZN ? GO:0000438 ... Q13888 31110295
    520444 6o9l:7 (7.2) BS01 dna 5.6.2.4 GO:0000112 ... P19447 31110295
    520445 6o9l:7 (7.2) BS02 dna 5.6.2.4 GO:0000112 ... P19447 31110295
    520446 6o9l:A (7.2) BS01 MG 2.7.7.48
    2.7.7.6
    3.1.13.-
    GO:0000287 ... P24928 31110295
    520447 6o9l:A (7.2) BS02 ZN 2.7.7.48
    2.7.7.6
    3.1.13.-
    GO:0000287 ... P24928 31110295
    520448 6o9l:A (7.2) BS03 ZN 2.7.7.48
    2.7.7.6
    3.1.13.-
    GO:0000287 ... P24928 31110295
    520449 6o9l:J (7.2) BS01 ZN ? GO:0000428 ... P62875 31110295
    520450 6o9l:L (7.2) BS01 ZN ? GO:0000428 ... P53803 31110295
    520451 6o9l:M (7.2) BS01 dna 2.3.1.48 GO:0000776 ... Q00403 31110295
    520452 6o9l:M (7.2) BS02 dna 2.3.1.48 GO:0000776 ... Q00403 31110295
    520453 6o9l:M (7.2) BS03 ZN 2.3.1.48 GO:0000776 ... Q00403 31110295
    520454 6o9l:N (7.2) BS01 dna ? GO:0000979 ... P52655 31110295
    520455 6o9l:P (7.2) BS01 dna ? GO:0000785 ... P20226 31110295
    520456 6o9l:P (7.2) BS02 dna ? GO:0000785 ... P20226 31110295
    520457 6o9l:Q (7.2) BS01 ZN ? GO:0005515 ... P29083 31110295
    520458 6o9l:S (7.2) BS01 dna ? GO:0001091 ... P35269 31110295
    520459 6o9l:T (7.2) BS01 dna 3.6.4.12 GO:0003677 ... P13984 31110295
    520460 6o9l:T (7.2) BS02 dna 3.6.4.12 GO:0003677 ... P13984 31110295
    520461 6o9l:U (7.2) BS01 ZN ? GO:0003676 ... P23193 31110295
    520462 6o9m:0 (4.4) BS01 SF4 3.6.4.12 GO:0000439 ... P18074 31110295
    520463 6o9m:4 (4.4) BS01 ZN ? GO:0000438 ... Q13889 31110295
    520464 6o9m:6 (4.4) BS01 ZN ? GO:0000438 ... Q13888 31110295
    520465 6o9m:6 (4.4) BS02 ZN ? GO:0000438 ... Q13888 31110295
    520466 6o9m:6 (4.4) BS03 ZN ? GO:0000438 ... Q13888 31110295
    520467 6o9n:A (2.598) BS01 FAD 1.1.3.7 GO:0016614 ... G2PZJ2 32653619
    520468 6o9n:A (2.598) BS02 CA 1.1.3.7 GO:0016614 ... G2PZJ2 32653619
    520469 6o9n:B (2.598) BS01 FAD 1.1.3.7 GO:0016614 ... G2PZJ2 32653619
    520470 6o9n:B (2.598) BS02 CA 1.1.3.7 GO:0016614 ... G2PZJ2 32653619
    520471 6o9o:A (1.586) BS01 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 N/A
    520472 6o9o:A (1.586) BS02 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 N/A
    520473 6o9o:A (1.586) BS03 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 N/A
    520474 6o9o:A (1.586) BS04 SAH 2.1.1.354 GO:0000978 ... Q9H7B4 N/A
    520475 6o9o:A (1.586) BS05 LUP 2.1.1.354 GO:0000978 ... Q9H7B4 N/A BindingDB: EC50=39nM, IC50=67nM, Ki=6.0nM
    520476 6o9p:A (2.1) BS01 BFQ ? GO:0000287 ... A0A0A0RDR2 30977996
    520477 6o9p:A (2.1) BS02 MG ? GO:0000287 ... A0A0A0RDR2 30977996
    520478 6o9p:A (2.1) BS03 MG ? GO:0000287 ... A0A0A0RDR2 30977996
    520479 6o9s:A (1.59) BS01 NXL ? GO:0008658 ... P0A0B1 32518158
    520480 6o9s:A (1.59) BS02 SO4 ? GO:0008658 ... P0A0B1 32518158
    520481 6o9t:A (4.01) BS01 6E3 ? GO:0005242 ... D9N164 32541684
    520482 6o9u:A (2.0) BS01 K ? GO:0005242 ... D9N164 32541684
    520483 6o9u:A (2.0) BS02 Z3P ? GO:0005242 ... D9N164 32541684
    520484 6o9v:A (3.094) BS01 M1M ? GO:0005242 ... D9N164 32541684
    520485 6o9v:B (3.094) BS01 M1M ? GO:0005242 ... D9N164 32541684
    520486 6o9w:A (1.95) BS01 NXL ? GO:0008658 ... P18357 32518158
    520487 6o9w:A (1.95) BS02 NXL ? GO:0008658 ... P18357 32518158
    520488 6o9w:B (1.95) BS01 NXL ? GO:0008658 ... P18357 32518158
    520489 6o9w:B (1.95) BS02 NXL ? GO:0008658 ... P18357 32518158
    520490 6o9x:A (1.7) BS01 M0S 3.2.1.143 GO:0004649 ... Q86W56 31827085 MOAD: ic50=0.9uM
    520491 6o9y:A (2.0) BS01 M0V 3.2.1.143 GO:0004649 ... Q86W56 31827085
    520492 6oa0:A (2.0) BS01 M1D 3.2.1.143 GO:0004649 ... Q86W56 31827085
    520493 6oa1:A (1.8) BS01 M0P 3.2.1.143 GO:0004649 ... Q86W56 31827085 MOAD: ic50=25.7uM
    520494 6oa3:A (1.9) BS01 M0M 3.2.1.143 GO:0004649 ... Q86W56 31827085 MOAD: ic50=0.4uM
    520495 6oa7:A (1.1) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 31994873
    520496 6oa7:A (1.1) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 31994873
    520497 6oa7:A (1.1) BS03 NAJ 1.1.1.1 GO:0004022 ... P00327 31994873
    520498 6oa7:A (1.1) BS04 ETF 1.1.1.1 GO:0004022 ... P00327 31994873
    520499 6oa7:B (1.1) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 31994873
    520500 6oa7:B (1.1) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 31994873
    520501 6oa7:B (1.1) BS03 NAJ 1.1.1.1 GO:0004022 ... P00327 31994873
    520502 6oa7:B (1.1) BS04 ETF 1.1.1.1 GO:0004022 ... P00327 31994873
    520503 6oa9:A (3.9) BS01 ATP 3.6.4.6 GO:0000837 ... P25694 31249135
    520504 6oa9:B (3.9) BS01 ATP 3.6.4.6 GO:0000837 ... P25694 31249135
    520505 6oa9:B (3.9) BS02 ATP 3.6.4.6 GO:0000837 ... P25694 31249135
    520506 6oa9:C (3.9) BS01 ATP 3.6.4.6 GO:0000837 ... P25694 31249135
    520507 6oa9:C (3.9) BS02 ATP 3.6.4.6 GO:0000837 ... P25694 31249135
    520508 6oa9:D (3.9) BS01 ATP 3.6.4.6 GO:0000837 ... P25694 31249135
    520509 6oa9:D (3.9) BS02 ATP 3.6.4.6 GO:0000837 ... P25694 31249135
    520510 6oa9:D (3.9) BS03 ATP 3.6.4.6 GO:0000837 ... P25694 31249135
    520511 6oa9:E (3.9) BS01 ADP 3.6.4.6 GO:0000837 ... P25694 31249135
    520512 6oa9:E (3.9) BS02 ATP 3.6.4.6 GO:0000837 ... P25694 31249135
    520513 6oa9:F (3.9) BS01 ATP 3.6.4.6 GO:0000837 ... P25694 31249135
    520514 6oa9:G (3.9) BS01 ZN ? GO:0000837 ... P33755 31249135
    520515 6oa9:G (3.9) BS02 ZN ? GO:0000837 ... P33755 31249135
    520516 6oaa:B (4.1) BS01 ADP 3.6.4.6 GO:0000837 ... P25694 31249135
    520517 6oaa:B (4.1) BS02 BEF 3.6.4.6 GO:0000837 ... P25694 31249135
    520518 6oaa:B (4.1) BS03 BEF 3.6.4.6 GO:0000837 ... P25694 31249135
    520519 6oaa:B (4.1) BS04 ADP 3.6.4.6 GO:0000837 ... P25694 31249135
    520520 6oaa:C (4.1) BS01 ADP 3.6.4.6 GO:0000837 ... P25694 31249135
    520521 6oaa:C (4.1) BS02 ADP 3.6.4.6 GO:0000837 ... P25694 31249135
    520522 6oaa:C (4.1) BS03 BEF 3.6.4.6 GO:0000837 ... P25694 31249135
    520523 6oaa:C (4.1) BS04 BEF 3.6.4.6 GO:0000837 ... P25694 31249135
    520524 6oaa:C (4.1) BS05 ADP 3.6.4.6 GO:0000837 ... P25694 31249135
    520525 6oaa:C (4.1) BS06 ADP 3.6.4.6 GO:0000837 ... P25694 31249135
    520526 6oaa:D (4.1) BS01 BEF 3.6.4.6 GO:0000837 ... P25694 31249135
    520527 6oaa:D (4.1) BS02 BEF 3.6.4.6 GO:0000837 ... P25694 31249135
    520528 6oaa:D (4.1) BS03 ADP 3.6.4.6 GO:0000837 ... P25694 31249135
    520529 6oaa:D (4.1) BS04 ADP 3.6.4.6 GO:0000837 ... P25694 31249135
    520530 6oaa:E (4.1) BS01 ADP 3.6.4.6 GO:0000837 ... P25694 31249135
    520531 6oaa:E (4.1) BS02 ADP 3.6.4.6 GO:0000837 ... P25694 31249135
    520532 6oaa:E (4.1) BS03 ADP 3.6.4.6 GO:0000837 ... P25694 31249135
    520533 6oab:A (3.6) BS01 peptide 3.6.4.6 GO:0000837 ... P25694 31249135
    520534 6oab:A (3.6) BS02 ADP 3.6.4.6 GO:0000837 ... P25694 31249135
    520535 6oab:A (3.6) BS03 ADP 3.6.4.6 GO:0000837 ... P25694 31249135
    520536 6oab:A (3.6) BS04 BEF 3.6.4.6 GO:0000837 ... P25694 31249135
    520537 6oab:B (3.6) BS01 peptide 3.6.4.6 GO:0000837 ... P25694 31249135
    520538 6oab:B (3.6) BS02 ADP 3.6.4.6 GO:0000837 ... P25694 31249135
    520539 6oab:B (3.6) BS03 BEF 3.6.4.6 GO:0000837 ... P25694 31249135
    520540 6oab:B (3.6) BS04 BEF 3.6.4.6 GO:0000837 ... P25694 31249135
    520541 6oab:B (3.6) BS05 BEF 3.6.4.6 GO:0000837 ... P25694 31249135
    520542 6oab:B (3.6) BS06 ADP 3.6.4.6 GO:0000837 ... P25694 31249135
    520543 6oab:C (3.6) BS01 peptide 3.6.4.6 GO:0000837 ... P25694 31249135
    520544 6oab:C (3.6) BS02 ADP 3.6.4.6 GO:0000837 ... P25694 31249135
    520545 6oab:C (3.6) BS03 ADP 3.6.4.6 GO:0000837 ... P25694 31249135
    520546 6oab:C (3.6) BS04 ADP 3.6.4.6 GO:0000837 ... P25694 31249135
    520547 6oab:C (3.6) BS05 BEF 3.6.4.6 GO:0000837 ... P25694 31249135
    520548 6oab:C (3.6) BS06 BEF 3.6.4.6 GO:0000837 ... P25694 31249135
    520549 6oab:D (3.6) BS01 peptide 3.6.4.6 GO:0000837 ... P25694 31249135
    520550 6oab:D (3.6) BS02 ADP 3.6.4.6 GO:0000837 ... P25694 31249135
    520551 6oab:D (3.6) BS03 BEF 3.6.4.6 GO:0000837 ... P25694 31249135
    520552 6oab:D (3.6) BS04 ADP 3.6.4.6 GO:0000837 ... P25694 31249135
    520553 6oab:E (3.6) BS01 peptide 3.6.4.6 GO:0000837 ... P25694 31249135
    520554 6oab:E (3.6) BS02 ADP 3.6.4.6 GO:0000837 ... P25694 31249135
    520555 6oab:E (3.6) BS03 ADP 3.6.4.6 GO:0000837 ... P25694 31249135
    520556 6oac:A (3.15) BS01 M1J 2.7.11.1
    2.7.1.137
    2.7.1.153
    GO:0016301 ... P42336 31244112
    520557 6oad:A (2.05) BS01 ZN 3.4.11.23 GO:0004177 ... P37095 32306515
    520558 6oad:A (2.05) BS02 ZN 3.4.11.23 GO:0004177 ... P37095 32306515
    520559 6oad:A (2.05) BS03 CA 3.4.11.23 GO:0004177 ... P37095 32306515
    520560 6oad:A (2.05) BS04 BCT 3.4.11.23 GO:0004177 ... P37095 32306515
    520561 6oad:B (2.05) BS01 ZN 3.4.11.23 GO:0004177 ... P37095 32306515
    520562 6oad:B (2.05) BS02 ZN 3.4.11.23 GO:0004177 ... P37095 32306515
    520563 6oad:B (2.05) BS03 CA 3.4.11.23 GO:0004177 ... P37095 32306515
    520564 6oad:B (2.05) BS04 BCT 3.4.11.23 GO:0004177 ... P37095 32306515
    520565 6oad:C (2.05) BS01 ZN 3.4.11.23 GO:0004177 ... P37095 32306515
    520566 6oad:C (2.05) BS02 ZN 3.4.11.23 GO:0004177 ... P37095 32306515
    520567 6oad:C (2.05) BS03 CA 3.4.11.23 GO:0004177 ... P37095 32306515
    520568 6oad:C (2.05) BS04 BCT 3.4.11.23 GO:0004177 ... P37095 32306515
    520569 6oad:D (2.05) BS01 ZN 3.4.11.23 GO:0004177 ... P37095 32306515
    520570 6oad:D (2.05) BS02 ZN 3.4.11.23 GO:0004177 ... P37095 32306515
    520571 6oad:D (2.05) BS03 CA 3.4.11.23 GO:0004177 ... P37095 32306515
    520572 6oad:D (2.05) BS04 BCT 3.4.11.23 GO:0004177 ... P37095 32306515
    520573 6oad:D (2.05) BS05 BCT 3.4.11.23 GO:0004177 ... P37095 32306515
    520574 6oad:D (2.05) BS06 BCT 3.4.11.23 GO:0004177 ... P37095 32306515
    520575 6oad:E (2.05) BS01 ZN 3.4.11.23 GO:0004177 ... P37095 32306515
    520576 6oad:E (2.05) BS02 ZN 3.4.11.23 GO:0004177 ... P37095 32306515
    520577 6oad:E (2.05) BS03 CA 3.4.11.23 GO:0004177 ... P37095 32306515
    520578 6oad:E (2.05) BS04 BCT 3.4.11.23 GO:0004177 ... P37095 32306515
    520579 6oad:F (2.05) BS01 ZN 3.4.11.23 GO:0004177 ... P37095 32306515
    520580 6oad:F (2.05) BS02 ZN 3.4.11.23 GO:0004177 ... P37095 32306515
    520581 6oad:F (2.05) BS03 CA 3.4.11.23 GO:0004177 ... P37095 32306515
    520582 6oad:F (2.05) BS04 BCT 3.4.11.23 GO:0004177 ... P37095 32306515
    520583 6oad:F (2.05) BS05 BCT 3.4.11.23 GO:0004177 ... P37095 32306515
    520584 6oad:G (2.05) BS01 ZN 3.4.11.23 GO:0004177 ... P37095 32306515
    520585 6oad:G (2.05) BS02 ZN 3.4.11.23 GO:0004177 ... P37095 32306515
    520586 6oad:G (2.05) BS03 CA 3.4.11.23 GO:0004177 ... P37095 32306515
    520587 6oad:G (2.05) BS04 BCT 3.4.11.23 GO:0004177 ... P37095 32306515
    520588 6oad:G (2.05) BS05 BCT 3.4.11.23 GO:0004177 ... P37095 32306515
    520589 6oad:H (2.05) BS01 ZN 3.4.11.23 GO:0004177 ... P37095 32306515
    520590 6oad:H (2.05) BS02 ZN 3.4.11.23 GO:0004177 ... P37095 32306515
    520591 6oad:H (2.05) BS03 CA 3.4.11.23 GO:0004177 ... P37095 32306515
    520592 6oad:H (2.05) BS04 BCT 3.4.11.23 GO:0004177 ... P37095 32306515
    520593 6oad:I (2.05) BS01 ZN 3.4.11.23 GO:0004177 ... P37095 32306515
    520594 6oad:I (2.05) BS02 ZN 3.4.11.23 GO:0004177 ... P37095 32306515
    520595 6oad:I (2.05) BS03 CA 3.4.11.23 GO:0004177 ... P37095 32306515
    520596 6oad:I (2.05) BS04 CA 3.4.11.23 GO:0004177 ... P37095 32306515
    520597 6oad:I (2.05) BS05 BCT 3.4.11.23 GO:0004177 ... P37095 32306515
    520598 6oad:J (2.05) BS01 ZN 3.4.11.23 GO:0004177 ... P37095 32306515
    520599 6oad:J (2.05) BS02 ZN 3.4.11.23 GO:0004177 ... P37095 32306515
    520600 6oad:J (2.05) BS03 CA 3.4.11.23 GO:0004177 ... P37095 32306515

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).