SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    52601 1tfd:A (2.3) BS01 CO3 ? GO:0005576 ... P19134 N/A
    52602 1tfd:A (2.3) BS02 FE ? GO:0005576 ... P19134 N/A
    52603 1tfi:A (-1.00) BS01 ZN ? GO:0003676 ... P23193 8399164
    52604 1tfm:A (2.8) BS01 P6C 3.2.2.22 GO:0017148 ... Q6ITZ3 N/A
    52605 1tfm:B (2.8) BS01 GAL 3.2.2.22 N/A Q6ITZ3 N/A
    52606 1tfm:B (2.8) BS02 GAL 3.2.2.22 N/A Q6ITZ3 N/A
    52607 1tfq:A (-1.00) BS01 ZN 2.3.2.27 N/A P98170 15317454
    52608 1tfq:A (-1.00) BS02 998 2.3.2.27 N/A P98170 15317454
    52609 1tft:A (-1.00) BS01 ZN 2.3.2.27 N/A P98170 15317454
    52610 1tft:A (-1.00) BS02 997 2.3.2.27 N/A P98170 15317454 BindingDB: Kd=5.0nM
    52611 1tfw:A (2.2) BS01 rna 2.7.7.72 GO:0000049 ... O28126 15295590
    52612 1tfw:A (2.2) BS02 rna 2.7.7.72 GO:0000049 ... O28126 15295590
    52613 1tfw:B (2.2) BS01 rna 2.7.7.72 GO:0000049 ... O28126 15295590
    52614 1tfw:B (2.2) BS02 rna 2.7.7.72 GO:0000049 ... O28126 15295590
    52615 1tfw:B (2.2) BS03 MG 2.7.7.72 GO:0000049 ... O28126 15295590
    52616 1tfw:B (2.2) BS04 ATP 2.7.7.72 GO:0000049 ... O28126 15295590
    52617 1tfw:C (2.2) BS01 rna 2.7.7.72 GO:0000049 ... O28126 15295590
    52618 1tfw:C (2.2) BS02 rna 2.7.7.72 GO:0000049 ... O28126 15295590
    52619 1tfw:D (2.2) BS01 rna 2.7.7.72 GO:0000049 ... O28126 15295590
    52620 1tfw:D (2.2) BS02 rna 2.7.7.72 GO:0000049 ... O28126 15295590
    52621 1tfw:D (2.2) BS03 MG 2.7.7.72 GO:0000049 ... O28126 15295590
    52622 1tfw:D (2.2) BS04 ATP 2.7.7.72 GO:0000049 ... O28126 15295590
    52623 1tfx:A (2.6) BS01 CA 3.4.21.4 GO:0004252 ... P00761 9199408
    52624 1tfx:B (2.6) BS01 CA 3.4.21.4 GO:0004252 ... P00761 9199408
    52625 1tfy:A (3.2) BS01 rna 2.7.7.72 GO:0000049 ... O28126 15295590
    52626 1tfy:A (3.2) BS02 rna 2.7.7.72 GO:0000049 ... O28126 15295590
    52627 1tfy:A (3.2) BS03 CTP 2.7.7.72 GO:0000049 ... O28126 15295590
    52628 1tfy:B (3.2) BS01 rna 2.7.7.72 GO:0000049 ... O28126 15295590
    52629 1tfy:B (3.2) BS02 rna 2.7.7.72 GO:0000049 ... O28126 15295590
    52630 1tfy:B (3.2) BS03 MG 2.7.7.72 GO:0000049 ... O28126 15295590
    52631 1tfy:B (3.2) BS04 CTP 2.7.7.72 GO:0000049 ... O28126 15295590
    52632 1tfy:C (3.2) BS01 rna 2.7.7.72 GO:0000049 ... O28126 15295590
    52633 1tfy:C (3.2) BS02 rna 2.7.7.72 GO:0000049 ... O28126 15295590
    52634 1tfy:C (3.2) BS03 MG 2.7.7.72 GO:0000049 ... O28126 15295590
    52635 1tfy:C (3.2) BS04 CTP 2.7.7.72 GO:0000049 ... O28126 15295590
    52636 1tfy:D (3.2) BS01 rna 2.7.7.72 GO:0000049 ... O28126 15295590
    52637 1tfy:D (3.2) BS02 rna 2.7.7.72 GO:0000049 ... O28126 15295590
    52638 1tfy:D (3.2) BS03 MG 2.7.7.72 GO:0000049 ... O28126 15295590
    52639 1tfy:D (3.2) BS04 CTP 2.7.7.72 GO:0000049 ... O28126 15295590
    52640 1tfz:A (1.8) BS01 FE 1.13.11.27 GO:0003868 ... P93836 15301540
    52641 1tfz:A (1.8) BS02 869 1.13.11.27 GO:0003868 ... P93836 15301540 MOAD: ic50=7nM
    52642 1tg1:A (1.25) BS01 peptide 3.1.1.4 GO:0004623 ... P59071 N/A
    52643 1tg2:A (2.2) BS01 FE 1.14.16.1 GO:0004497 ... P00439 15557004
    52644 1tg2:A (2.2) BS02 H2B 1.14.16.1 GO:0004497 ... P00439 15557004
    52645 1tg3:A (1.8) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 15667203
    52646 1tg4:A (1.7) BS01 peptide 3.1.1.4 GO:0004623 ... P59071 N/A
    52647 1tg5:A (1.9) BS01 FE2 1.13.11.27 GO:0003868 ... P93836 15301540
    52648 1tg5:A (1.9) BS02 645 1.13.11.27 GO:0003868 ... P93836 15301540 MOAD: ic50=12nM
    52649 1tg6:A (2.1) BS01 FME 3.4.21.92 GO:0004175 ... Q16740 15522782
    52650 1tg6:B (2.1) BS01 FME 3.4.21.92 GO:0004175 ... Q16740 15522782
    52651 1tg6:C (2.1) BS01 FME 3.4.21.92 GO:0004175 ... Q16740 15522782
    52652 1tg6:D (2.1) BS01 FME 3.4.21.92 GO:0004175 ... Q16740 15522782
    52653 1tg6:E (2.1) BS01 FME 3.4.21.92 GO:0004175 ... Q16740 15522782
    52654 1tg6:F (2.1) BS01 FME 3.4.21.92 GO:0004175 ... Q16740 15522782
    52655 1tg6:G (2.1) BS01 FME 3.4.21.92 GO:0004175 ... Q16740 15522782
    52656 1tg7:A (1.9) BS01 MAN 3.2.1.23 GO:0004553 ... Q700S9 15491613
    52657 1tg7:A (1.9) BS02 MAN 3.2.1.23 GO:0004553 ... Q700S9 15491613
    52658 1tg7:A (1.9) BS03 MAN 3.2.1.23 GO:0004553 ... Q700S9 15491613
    52659 1tg7:A (1.9) BS04 MAN 3.2.1.23 GO:0004553 ... Q700S9 15491613
    52660 1tg7:A (1.9) BS05 BMA 3.2.1.23 GO:0004553 ... Q700S9 15491613
    52661 1tg9:A (1.9) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 15667203
    52662 1tgb:A (1.8) BS01 CA 3.4.21.4 GO:0004175 ... P00760 864704
    52663 1tgc:A (1.8) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    52664 1tgh:A (2.9) BS01 dna ? GO:0003677 ... P20226 8757291
    52665 1tgh:A (2.9) BS02 dna ? GO:0003677 ... P20226 8757291
    52666 1tgm:A (1.86) BS01 AIN 3.1.1.4 GO:0004623 ... P59071 N/A
    52667 1tgm:A (1.86) BS02 CA 3.1.1.4 GO:0004623 ... P59071 N/A
    52668 1tgs:Z (1.8) BS01 CA 3.4.21.4 GO:0004175 ... P00760 7169635
    52669 1tgt:A (1.7) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    52670 1tgu:A (2.8) BS01 HEM 1.11.1.6 GO:0004096 ... P00432 N/A
    52671 1tgu:B (2.8) BS01 HEM 1.11.1.6 GO:0004096 ... P00432 N/A
    52672 1tgu:C (2.8) BS01 HEM 1.11.1.6 GO:0004096 ... P00432 N/A
    52673 1tgu:D (2.8) BS01 HEM 1.11.1.6 GO:0004096 ... P00432 N/A
    52674 1tgv:A (2.2) BS01 5UD 2.4.2.3 GO:0003824 ... P12758 N/A
    52675 1tgv:B (2.2) BS01 5UD 2.4.2.3 GO:0003824 ... P12758 N/A
    52676 1tgy:A (2.2) BS01 R1P 2.4.2.3 GO:0003824 ... P12758 N/A
    52677 1tgy:A (2.2) BS02 URA 2.4.2.3 GO:0003824 ... P12758 N/A
    52678 1tgy:A (2.2) BS03 R1P 2.4.2.3 GO:0003824 ... P12758 N/A
    52679 1tgy:B (2.2) BS01 R1P 2.4.2.3 GO:0003824 ... P12758 N/A
    52680 1tgy:B (2.2) BS02 R1P 2.4.2.3 GO:0003824 ... P12758 N/A
    52681 1tgy:B (2.2) BS03 URA 2.4.2.3 GO:0003824 ... P12758 N/A
    52682 1th2:A (2.8) BS01 HEM 1.11.1.6 GO:0004096 ... P00432 N/A
    52683 1th2:B (2.8) BS01 HEM 1.11.1.6 GO:0004096 ... P00432 N/A
    52684 1th2:C (2.8) BS01 HEM 1.11.1.6 GO:0004096 ... P00432 N/A
    52685 1th2:D (2.8) BS01 AZI 1.11.1.6 GO:0004096 ... P00432 N/A
    52686 1th2:D (2.8) BS02 HEM 1.11.1.6 GO:0004096 ... P00432 N/A
    52687 1th3:A (2.8) BS01 HEM 1.11.1.6 GO:0004096 ... P00432 N/A
    52688 1th3:B (2.8) BS01 HEM 1.11.1.6 GO:0004096 ... P00432 N/A
    52689 1th3:C (2.8) BS01 HEM 1.11.1.6 GO:0004096 ... P00432 N/A
    52690 1th3:D (2.8) BS01 HEM 1.11.1.6 GO:0004096 ... P00432 N/A
    52691 1th4:A (2.98) BS01 HEM 1.11.1.6 GO:0004096 ... P00432 N/A
    52692 1th4:B (2.98) BS01 HEM 1.11.1.6 GO:0004096 ... P00432 N/A
    52693 1th4:C (2.98) BS01 HEM 1.11.1.6 GO:0004096 ... P00432 N/A
    52694 1th4:D (2.98) BS01 3TR 1.11.1.6 GO:0004096 ... P00432 N/A
    52695 1th4:D (2.98) BS02 HEM 1.11.1.6 GO:0004096 ... P00432 N/A
    52696 1th6:A (1.23) BS01 OIN 3.1.1.4 GO:0004623 ... P59071 N/A
    52697 1th8:A (2.4) BS01 ADP 2.7.11.1 GO:0004672 ... O32727 15236958
    52698 1th9:A (1.63) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 15667203
    52699 1tha:A (2.0) BS01 T33 ? GO:0001523 ... P02766 1730601
    52700 1tha:B (2.0) BS01 T33 ? GO:0001523 ... P02766 1730601
    52701 1thb:A (1.5) BS01 HEM ? GO:0004601 ... P69905 2383372
    52702 1thb:A (1.5) BS02 OXY ? GO:0004601 ... P69905 2383372
    52703 1thb:B (1.5) BS01 HEM ? GO:0004601 ... P68871 2383372
    52704 1thb:B (1.5) BS02 IHP ? GO:0004601 ... P68871 2383372
    52705 1thb:C (1.5) BS01 HEM ? GO:0004601 ... P69905 2383372
    52706 1thb:C (1.5) BS02 OXY ? GO:0004601 ... P69905 2383372
    52707 1thb:D (1.5) BS01 IHP ? GO:0004601 ... P68871 2383372
    52708 1thb:D (1.5) BS02 HEM ? GO:0004601 ... P68871 2383372
    52709 1thc:A (2.3) BS01 FL9 ? GO:0001523 ... P02766 1631168
    52710 1thc:B (2.3) BS01 FL9 ? GO:0001523 ... P02766 1631168
    52711 1the:A (1.9) BS01 0E6 3.4.22.1 GO:0006508 ... P00787 7890671
    52712 1the:B (1.9) BS01 0E6 3.4.22.1 GO:0006508 ... P00787 7890671
    52713 1thj:A (2.8) BS01 ZN 4.2.1.1 GO:0004089 ... P40881 8665839
    52714 1thj:B (2.8) BS01 ZN 4.2.1.1 GO:0004089 ... P40881 8665839
    52715 1thj:C (2.8) BS01 ZN 4.2.1.1 GO:0004089 ... P40881 8665839
    52716 1thk:A (1.8) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 15667203
    52717 1thl:A (1.7) BS01 CA 3.4.24.27 GO:0004222 ... P00800 8286362
    52718 1thl:A (1.7) BS02 CA 3.4.24.27 GO:0004222 ... P00800 8286362
    52719 1thl:A (1.7) BS03 CA 3.4.24.27 GO:0004222 ... P00800 8286362
    52720 1thl:A (1.7) BS04 CA 3.4.24.27 GO:0004222 ... P00800 8286362
    52721 1thl:A (1.7) BS05 ZN 3.4.24.27 GO:0004222 ... P00800 8286362
    52722 1thl:A (1.7) BS06 0DB 3.4.24.27 GO:0004222 ... P00800 8286362 MOAD: Ki=0.38uM
    52723 1thm:A (1.37) BS01 CA 3.4.21.66 GO:0004252 ... P04072 2196375
    52724 1thm:A (1.37) BS02 CA 3.4.21.66 GO:0004252 ... P04072 2196375
    52725 1thn:A (2.5) BS01 ADP 2.7.11.1 GO:0004672 ... O32727 15236958
    52726 1thn:C (2.5) BS01 ADP 2.7.11.1 GO:0004672 ... O32727 15236958
    52727 1tho:A (2.3) BS01 CU ? GO:0015035 ... P0AA25 N/A
    52728 1thp:B (2.1) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 10051558
    52729 1thp:B (2.1) BS02 0G6 3.4.21.5 GO:0004252 ... P00734 10051558
    52730 1thr:H (2.3) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 8376390
    52731 1thr:H (2.3) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 8376390
    52732 1ths:H (2.2) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 8376390
    52733 1thy:A (2.9) BS01 UMP 2.1.1.45 GO:0004799 ... P00469 8371269
    52734 1thz:A (1.8) BS01 326 2.1.2.3
    3.5.4.10
    GO:0003937 ... P31335 15355974 MOAD: Ki=7.1uM
    52735 1thz:A (1.8) BS02 326 2.1.2.3
    3.5.4.10
    GO:0003937 ... P31335 15355974 MOAD: Ki=7.1uM
    52736 1thz:B (1.8) BS01 326 2.1.2.3
    3.5.4.10
    GO:0003937 ... P31335 15355974 MOAD: Ki=7.1uM
    52737 1thz:B (1.8) BS02 326 2.1.2.3
    3.5.4.10
    GO:0003937 ... P31335 15355974 MOAD: Ki=7.1uM
    52738 1ti7:A (1.7) BS01 NAP ? GO:0001081 ... Q5AU62 12764138 MOAD: Kd=65uM
    52739 1tid:A (2.5) BS01 ATP 2.7.11.1 GO:0004672 ... O32727 15236958
    52740 1tid:C (2.5) BS01 ATP 2.7.11.1 GO:0004672 ... O32727 15236958
    52741 1til:A (2.7) BS01 MG 2.7.11.1 GO:0004672 ... O32727 15236958
    52742 1til:A (2.7) BS02 ATP 2.7.11.1 GO:0004672 ... O32727 15236958
    52743 1til:C (2.7) BS01 ATP 2.7.11.1 GO:0004672 ... O32727 15236958
    52744 1til:E (2.7) BS01 ATP 2.7.11.1 GO:0004672 ... O32727 15236958
    52745 1tio:A (1.93) BS01 CA 3.4.21.4 GO:0004175 ... P00760 9920392
    52746 1tio:A (1.93) BS02 SO4 3.4.21.4 GO:0004175 ... P00760 9920392
    52747 1tio:A (1.93) BS03 SO4 3.4.21.4 GO:0004175 ... P00760 9920392
    52748 1tio:A (1.93) BS04 SO4 3.4.21.4 GO:0004175 ... P00760 9920392
    52749 1tio:A (1.93) BS05 SO4 3.4.21.4 GO:0004175 ... P00760 9920392
    52750 1tio:A (1.93) BS06 SO4 3.4.21.4 GO:0004175 ... P00760 9920392
    52751 1tio:A (1.93) BS07 BEN 3.4.21.4 GO:0004175 ... P00760 9920392
    52752 1tip:A (2.2) BS01 F6P 2.7.1.105
    3.1.3.46
    GO:0003824 ... P07953 9253407
    52753 1tip:B (2.2) BS01 F6P 2.7.1.105
    3.1.3.46
    GO:0003824 ... P07953 9253407
    52754 1tiq:A (1.9) BS01 COA 2.3.1.57 GO:0004145 ... P21340 16210326
    52755 1tiq:A (1.9) BS02 COA 2.3.1.57 GO:0004145 ... P21340 16210326
    52756 1tiq:B (1.9) BS01 COA 2.3.1.57 GO:0004145 ... P21340 16210326
    52757 1tiw:A (2.0) BS01 FAD 1.2.1.88
    1.5.5.2
    GO:0003842 ... P09546 15449943
    52758 1tiw:A (2.0) BS02 TFB 1.2.1.88
    1.5.5.2
    GO:0003842 ... P09546 15449943 MOAD: Ki=0.2mM
    52759 1tiy:A (2.5) BS01 ZN 3.5.4.3 GO:0006147 ... O34598 N/A
    52760 1tiy:B (2.5) BS01 ZN 3.5.4.3 GO:0006147 ... O34598 N/A
    52761 1tj0:A (2.1) BS01 FAD 1.2.1.88
    1.5.5.2
    GO:0003842 ... P09546 15449943
    52762 1tj1:A (2.0) BS01 FAD 1.2.1.88
    1.5.5.2
    GO:0003842 ... P09546 15449943
    52763 1tj2:A (2.05) BS01 ACT 1.2.1.88
    1.5.5.2
    GO:0003842 ... P09546 15449943 MOAD: Ki=30mM
    52764 1tj2:A (2.05) BS02 FAD 1.2.1.88
    1.5.5.2
    GO:0003842 ... P09546 15449943
    52765 1tj3:A (2.8) BS01 MG 3.1.3.24 GO:0000287 ... P74325 15937230
    52766 1tj4:A (2.7) BS01 GLC 3.1.3.24 GO:0000287 ... P74325 15937230
    52767 1tj4:A (2.7) BS02 MG 3.1.3.24 GO:0000287 ... P74325 15937230
    52768 1tj5:A (2.2) BS01 GLC 3.1.3.24 GO:0000287 ... P74325 15937230
    52769 1tj5:A (2.2) BS02 PO4 3.1.3.24 GO:0000287 ... P74325 15937230
    52770 1tj5:A (2.2) BS03 MG 3.1.3.24 GO:0000287 ... P74325 15937230
    52771 1tj5:A (2.2) BS04 MG 3.1.3.24 GO:0000287 ... P74325 15937230
    52772 1tj7:B (2.44) BS01 PO4 4.3.2.1 GO:0003824 ... P11447 15502303
    52773 1tj9:A (1.1) BS01 peptide 3.1.1.4 GO:0004623 ... P59071 N/A
    52774 1tjg:H (2.0) BS01 peptide N/A N/A N/A 15367639
    52775 1tjg:L (2.0) BS01 peptide N/A N/A N/A 15367639
    52776 1tjh:H (2.1) BS01 peptide N/A N/A N/A 15367639
    52777 1tjh:L (2.1) BS01 peptide N/A N/A N/A 15367639
    52778 1tji:H (2.2) BS01 peptide N/A N/A N/A 15367639
    52779 1tji:L (2.2) BS01 peptide N/A N/A N/A 15367639
    52780 1tjj:A (2.0) BS01 PFS ? GO:0001573 ... P17900 15327957
    52781 1tjj:A (2.0) BS02 LPE ? GO:0001573 ... P17900 15327957
    52782 1tjj:B (2.0) BS01 PFS ? GO:0001573 ... P17900 15327957
    52783 1tjj:B (2.0) BS02 LPE ? GO:0001573 ... P17900 15327957
    52784 1tjj:C (2.0) BS01 PFS ? GO:0001573 ... P17900 15327957
    52785 1tjj:C (2.0) BS02 LPE ? GO:0001573 ... P17900 15327957
    52786 1tjk:A (1.25) BS01 peptide 3.1.1.4 GO:0004623 ... P59071 N/A
    52787 1tjl:A (2.0) BS01 ZN ? GO:0005737 ... P0ABS1 15294156
    52788 1tjl:B (2.0) BS01 ZN ? GO:0005737 ... P0ABS1 15294156
    52789 1tjl:C (2.0) BS01 ZN ? GO:0005737 ... P0ABS1 15294156
    52790 1tjl:D (2.0) BS01 ZN ? GO:0005737 ... P0ABS1 15294156
    52791 1tjl:E (2.0) BS01 ZN ? GO:0005737 ... P0ABS1 15294156
    52792 1tjl:F (2.0) BS01 ZN ? GO:0005737 ... P0ABS1 15294156
    52793 1tjl:G (2.0) BS01 ZN ? GO:0005737 ... P0ABS1 15294156
    52794 1tjl:H (2.0) BS01 ZN ? GO:0005737 ... P0ABS1 15294156
    52795 1tjl:I (2.0) BS01 ZN ? GO:0005737 ... P0ABS1 15294156
    52796 1tjl:J (2.0) BS01 ZN ? GO:0005737 ... P0ABS1 15294156
    52797 1tjo:A (1.6) BS01 FE 1.16.-.- GO:0005737 ... Q9HMP7 15365182
    52798 1tjo:B (1.6) BS01 FE 1.16.-.- GO:0005737 ... Q9HMP7 15365182
    52799 1tjo:C (1.6) BS01 FE 1.16.-.- GO:0005737 ... Q9HMP7 15365182
    52800 1tjo:D (1.6) BS01 FE 1.16.-.- GO:0005737 ... Q9HMP7 15365182

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).