SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    53401 1trr:A (2.4) BS04 TRP ? GO:0003676 ... P0A881 8232559
    53402 1trr:B (2.4) BS01 dna ? GO:0003676 ... P0A881 8232559
    53403 1trr:B (2.4) BS02 dna ? GO:0003676 ... P0A881 8232559
    53404 1trr:B (2.4) BS03 TRP ? GO:0003676 ... P0A881 8232559
    53405 1trr:B (2.4) BS04 TRP ? GO:0003676 ... P0A881 8232559
    53406 1trr:D (2.4) BS01 dna ? GO:0003676 ... P0A881 8232559
    53407 1trr:D (2.4) BS02 dna ? GO:0003676 ... P0A881 8232559
    53408 1trr:D (2.4) BS03 TRP ? GO:0003676 ... P0A881 8232559
    53409 1trr:D (2.4) BS04 TRP ? GO:0003676 ... P0A881 8232559
    53410 1trr:E (2.4) BS01 dna ? GO:0003676 ... P0A881 8232559
    53411 1trr:E (2.4) BS02 dna ? GO:0003676 ... P0A881 8232559
    53412 1trr:E (2.4) BS03 dna ? GO:0003676 ... P0A881 8232559
    53413 1trr:E (2.4) BS04 dna ? GO:0003676 ... P0A881 8232559
    53414 1trr:E (2.4) BS05 TRP ? GO:0003676 ... P0A881 8232559
    53415 1trr:E (2.4) BS06 TRP ? GO:0003676 ... P0A881 8232559
    53416 1trr:G (2.4) BS01 dna ? GO:0003676 ... P0A881 8232559
    53417 1trr:G (2.4) BS02 dna ? GO:0003676 ... P0A881 8232559
    53418 1trr:G (2.4) BS03 TRP ? GO:0003676 ... P0A881 8232559
    53419 1trr:G (2.4) BS04 TRP ? GO:0003676 ... P0A881 8232559
    53420 1trr:H (2.4) BS01 dna ? GO:0003676 ... P0A881 8232559
    53421 1trr:H (2.4) BS02 dna ? GO:0003676 ... P0A881 8232559
    53422 1trr:H (2.4) BS03 dna ? GO:0003676 ... P0A881 8232559
    53423 1trr:H (2.4) BS04 TRP ? GO:0003676 ... P0A881 8232559
    53424 1trr:H (2.4) BS05 TRP ? GO:0003676 ... P0A881 8232559
    53425 1trr:J (2.4) BS01 dna ? GO:0003676 ... P0A881 8232559
    53426 1trr:J (2.4) BS02 dna ? GO:0003676 ... P0A881 8232559
    53427 1trr:J (2.4) BS03 TRP ? GO:0003676 ... P0A881 8232559
    53428 1trr:J (2.4) BS04 TRP ? GO:0003676 ... P0A881 8232559
    53429 1trr:K (2.4) BS01 dna ? GO:0003676 ... P0A881 8232559
    53430 1trr:K (2.4) BS02 dna ? GO:0003676 ... P0A881 8232559
    53431 1trr:K (2.4) BS03 TRP ? GO:0003676 ... P0A881 8232559
    53432 1trr:K (2.4) BS04 TRP ? GO:0003676 ... P0A881 8232559
    53433 1try:A (1.55) BS01 ISP 3.4.21.4 GO:0004252 ... P35049 15299338
    53434 1trz:B (1.6) BS01 peptide ? GO:0005179 ... P01308 8312271
    53435 1trz:D (1.6) BS01 peptide ? GO:0005179 ... P01308 8312271
    53436 1tsd:A (1.95) BS01 UMP 2.1.1.45 GO:0000287 ... P0A884 8846221 MOAD: Kd=0.04uM
    53437 1tsd:A (1.95) BS02 F89 2.1.1.45 GO:0000287 ... P0A884 8846221
    53438 1tsd:A (1.95) BS03 UMP 2.1.1.45 GO:0000287 ... P0A884 8846221 MOAD: Kd=0.04uM
    53439 1tsd:B (1.95) BS01 UMP 2.1.1.45 GO:0000287 ... P0A884 8846221 MOAD: Kd=0.04uM
    53440 1tsd:B (1.95) BS02 UMP 2.1.1.45 GO:0000287 ... P0A884 8846221 MOAD: Kd=0.04uM
    53441 1tsd:B (1.95) BS03 F89 2.1.1.45 GO:0000287 ... P0A884 8846221
    53442 1tsi:A (2.84) BS01 4PB 5.3.1.1 GO:0004807 ... P04789 1304889
    53443 1tsl:A (2.5) BS01 A15 2.1.1.45 GO:0004799 ... P00469 9931028 MOAD: Ki=0.7uM
    BindingDB: Ki=700nM
    53444 1tsm:A (3.0) BS01 MR2 2.1.1.45 GO:0004799 ... P00469 9931028
    53445 1tsn:A (2.2) BS01 UFP 2.1.1.45 GO:0000287 ... P0A884 9109668
    53446 1tsn:A (2.2) BS02 C2F 2.1.1.45 GO:0000287 ... P0A884 9109668
    53447 1tsq:A (2.0) BS01 peptide 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P03369 15507631
    53448 1tsq:B (2.0) BS01 peptide 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P03369 15507631
    53449 1tsr:A (2.2) BS01 dna ? GO:0000976 ... P04637 8023157
    53450 1tsr:A (2.2) BS02 ZN ? GO:0000976 ... P04637 8023157
    53451 1tsr:B (2.2) BS01 dna ? GO:0000976 ... P04637 8023157
    53452 1tsr:B (2.2) BS02 dna ? GO:0000976 ... P04637 8023157
    53453 1tsr:B (2.2) BS03 ZN ? GO:0000976 ... P04637 8023157
    53454 1tsr:C (2.2) BS01 dna ? GO:0000976 ... P04637 8023157
    53455 1tsr:C (2.2) BS02 ZN ? GO:0000976 ... P04637 8023157
    53456 1tsu:A (2.1) BS01 peptide 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P03369 15507631
    53457 1tsu:B (2.1) BS01 peptide 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P03369 15507631
    53458 1tsv:A (2.9) BS01 UMP 2.1.1.45 GO:0004799 ... P00469 9053905
    53459 1tsx:A (2.5) BS01 UMP 2.1.1.45 GO:0004799 ... P00469 9053905
    53460 1tsy:A (2.2) BS01 UMP 2.1.1.45 GO:0004799 ... P00469 9053905 MOAD: Kd=11uM
    53461 1tsz:A (2.75) BS01 PO4 2.1.1.45 GO:0004799 ... P00469 9053905
    53462 1tt0:A (1.8) BS01 ACT 1.1.3.10 GO:0016614 ... Q7ZA32 15288786
    53463 1tt0:A (1.8) BS02 FAD 1.1.3.10 GO:0016614 ... Q7ZA32 15288786
    53464 1tt0:B (1.8) BS01 ACT 1.1.3.10 GO:0016614 ... Q7ZA32 15288786
    53465 1tt0:B (1.8) BS02 FAD 1.1.3.10 GO:0016614 ... Q7ZA32 15288786
    53466 1tt0:C (1.8) BS01 ACT 1.1.3.10 GO:0016614 ... Q7ZA32 15288786
    53467 1tt0:C (1.8) BS02 FAD 1.1.3.10 GO:0016614 ... Q7ZA32 15288786
    53468 1tt0:D (1.8) BS01 ACT 1.1.3.10 GO:0016614 ... Q7ZA32 15288786
    53469 1tt0:D (1.8) BS02 FAD 1.1.3.10 GO:0016614 ... Q7ZA32 15288786
    53470 1tt1:A (1.93) BS01 KAI ? GO:0015276 ... P42260 15721240 MOAD: Ki=64.6nM
    BindingDB: Ki=12.7nM, Kd=39nM, EC50=1800nM
    53471 1tt1:B (1.93) BS01 KAI ? GO:0015276 ... P42260 15721240 MOAD: Ki=64.6nM
    BindingDB: Ki=12.7nM, Kd=39nM, EC50=1800nM
    53472 1tt2:A (1.85) BS01 CA 3.1.31.1 GO:0003676 ... P00644 15276844
    53473 1tt2:A (1.85) BS02 THP 3.1.31.1 GO:0003676 ... P00644 15276844
    53474 1tt4:A (2.801) BS01 MG 6.3.2.2 GO:0003824 ... Q8ZR41 N/A
    53475 1tt4:B (2.801) BS01 MG 6.3.2.2 GO:0003824 ... Q8ZR41 N/A
    53476 1tt5:B (2.6) BS01 peptide 6.2.1.64 GO:0005515 ... Q8TBC4 15361859
    53477 1tt5:B (2.6) BS02 ZN 6.2.1.64 GO:0005515 ... Q8TBC4 15361859
    53478 1tt5:D (2.6) BS01 peptide 6.2.1.64 GO:0005515 ... Q8TBC4 15361859
    53479 1tt5:D (2.6) BS02 ZN 6.2.1.64 GO:0005515 ... Q8TBC4 15361859
    53480 1tt6:A (1.8) BS01 DES ? GO:0001523 ... P02766 15469931
    53481 1tt6:B (1.8) BS01 DES ? GO:0001523 ... P02766 15469931
    53482 1tth:A (2.8) BS01 PAL 2.1.3.2 GO:0004070 ... P0A786 15288791
    53483 1tth:B (2.8) BS01 ZN ? GO:0005515 ... P0A7F3 15288791
    53484 1tth:C (2.8) BS01 PAL 2.1.3.2 GO:0004070 ... P0A786 15288791
    53485 1tth:D (2.8) BS01 ZN ? GO:0005515 ... P0A7F3 15288791
    53486 1tti:A (2.4) BS01 PGA 5.3.1.1 GO:0004807 ... P04789 8591044
    53487 1ttj:A (2.4) BS01 PGH 5.3.1.1 GO:0004807 ... P04789 8591044
    53488 1ttm:A (1.95) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 15453828
    53489 1ttm:A (1.95) BS02 667 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 15453828 MOAD: Kd=45nM
    BindingDB: IC50=25nM, Ki=21nM, Kd=45nM
    53490 1ttp:B (2.3) BS01 PLP 4.2.1.20 GO:0000162 ... P0A2K1 8672457
    53491 1ttq:B (2.0) BS01 PLP 4.2.1.20 GO:0000162 ... P0A2K1 8672457
    53492 1ttt:A (2.7) BS01 rna ? GO:0000287 ... Q01698 7491491
    53493 1ttt:A (2.7) BS02 rna ? GO:0000287 ... Q01698 7491491
    53494 1ttt:A (2.7) BS03 PHE ? GO:0000287 ... Q01698 7491491
    53495 1ttt:A (2.7) BS04 MG ? GO:0000287 ... Q01698 7491491
    53496 1ttt:A (2.7) BS05 GNP ? GO:0000287 ... Q01698 7491491
    53497 1ttt:B (2.7) BS01 rna ? GO:0000287 ... Q01698 7491491
    53498 1ttt:B (2.7) BS02 rna ? GO:0000287 ... Q01698 7491491
    53499 1ttt:B (2.7) BS03 PHE ? GO:0000287 ... Q01698 7491491
    53500 1ttt:B (2.7) BS04 MG ? GO:0000287 ... Q01698 7491491
    53501 1ttt:B (2.7) BS05 GNP ? GO:0000287 ... Q01698 7491491
    53502 1ttt:C (2.7) BS01 rna ? GO:0000287 ... Q01698 7491491
    53503 1ttt:C (2.7) BS02 rna ? GO:0000287 ... Q01698 7491491
    53504 1ttt:C (2.7) BS03 PHE ? GO:0000287 ... Q01698 7491491
    53505 1ttt:C (2.7) BS04 MG ? GO:0000287 ... Q01698 7491491
    53506 1ttt:C (2.7) BS05 GNP ? GO:0000287 ... Q01698 7491491
    53507 1ttu:A (2.85) BS01 dna ? GO:0000978 ... V6CLJ5 15297877
    53508 1ttu:A (2.85) BS02 dna ? GO:0000978 ... V6CLJ5 15297877
    53509 1ttv:A (-1.00) BS01 IMY 2.3.2.27 GO:0005634 ... P56273 15557803
    53510 1ttw:A (2.38) BS01 peptide ? GO:0030254 ... Q7BTX0 15333930
    53511 1ttx:A (-1.00) BS01 CA ? GO:0005509 ... P0CE72 15610002
    53512 1ttx:A (-1.00) BS02 CA ? GO:0005509 ... P0CE72 15610002
    53513 1tu0:A (2.55) BS01 PCT 2.1.3.2 GO:0004070 ... P0A786 15288791
    53514 1tu0:B (2.55) BS01 ZN ? GO:0005515 ... P0A7F3 15288791
    53515 1tu0:C (2.55) BS01 PCT 2.1.3.2 GO:0004070 ... P0A786 15288791
    53516 1tu0:D (2.55) BS01 ZN ? GO:0005515 ... P0A7F3 15288791
    53517 1tu2:A (-1.00) BS01 CU ? GO:0005507 ... P46444 15705583
    53518 1tu2:B (-1.00) BS01 HEC ? GO:0005506 ... Q93SW9 15705583
    53519 1tu3:A (2.31) BS01 MG 3.6.5.2 GO:0003924 ... P20339 15378032
    53520 1tu3:A (2.31) BS02 GNP 3.6.5.2 GO:0003924 ... P20339 15378032
    53521 1tu3:B (2.31) BS01 MG 3.6.5.2 GO:0003924 ... P20339 15378032
    53522 1tu3:B (2.31) BS02 GNP 3.6.5.2 GO:0003924 ... P20339 15378032
    53523 1tu3:C (2.31) BS01 MG 3.6.5.2 GO:0003924 ... P20339 15378032
    53524 1tu3:C (2.31) BS02 GNP 3.6.5.2 GO:0003924 ... P20339 15378032
    53525 1tu3:D (2.31) BS01 MG 3.6.5.2 GO:0003924 ... P20339 15378032
    53526 1tu3:D (2.31) BS02 GNP 3.6.5.2 GO:0003924 ... P20339 15378032
    53527 1tu3:E (2.31) BS01 MG 3.6.5.2 GO:0003924 ... P20339 15378032
    53528 1tu3:E (2.31) BS02 GNP 3.6.5.2 GO:0003924 ... P20339 15378032
    53529 1tu4:A (2.2) BS01 GDP 3.6.5.2 GO:0003924 ... P20339 15378032
    53530 1tu4:B (2.2) BS01 CO 3.6.5.2 GO:0003924 ... P20339 15378032
    53531 1tu4:B (2.2) BS02 GDP 3.6.5.2 GO:0003924 ... P20339 15378032
    53532 1tu4:C (2.2) BS01 GDP 3.6.5.2 GO:0003924 ... P20339 15378032
    53533 1tu4:D (2.2) BS01 CO 3.6.5.2 GO:0003924 ... P20339 15378032
    53534 1tu4:D (2.2) BS02 GDP 3.6.5.2 GO:0003924 ... P20339 15378032
    53535 1tu5:A (2.37) BS01 CU 1.4.3.21 GO:0005507 ... Q29437 15701511
    53536 1tu5:A (2.37) BS02 CA 1.4.3.21 GO:0005507 ... Q29437 15701511
    53537 1tu5:A (2.37) BS03 CA 1.4.3.21 GO:0005507 ... Q29437 15701511
    53538 1tu5:B (2.37) BS01 CU 1.4.3.21 GO:0005507 ... Q29437 15701511
    53539 1tu5:B (2.37) BS02 CA 1.4.3.21 GO:0005507 ... Q29437 15701511
    53540 1tu5:B (2.37) BS03 CA 1.4.3.21 GO:0005507 ... Q29437 15701511
    53541 1tu6:A (1.75) BS01 FSP 3.4.22.38 GO:0006508 ... P43235 15341947 BindingDB: IC50=0.832nM
    53542 1tu6:B (1.75) BS01 FSP 3.4.22.38 GO:0006508 ... P43235 15341947 BindingDB: IC50=0.832nM
    53543 1tu6:B (1.75) BS02 FSP 3.4.22.38 GO:0006508 ... P43235 15341947 BindingDB: IC50=0.832nM
    53544 1tu7:A (1.5) BS01 GSH 2.5.1.18 GO:0004364 ... P46427 15640152
    53545 1tu7:B (1.5) BS01 GSH 2.5.1.18 GO:0004364 ... P46427 15640152
    53546 1tu8:A (1.8) BS01 GTX 2.5.1.18 GO:0004364 ... P46427 15640152
    53547 1tu8:B (1.8) BS01 GTX 2.5.1.18 GO:0004364 ... P46427 15640152
    53548 1tu8:C (1.8) BS01 GTX 2.5.1.18 GO:0004364 ... P46427 15640152
    53549 1tu8:D (1.8) BS01 GTX 2.5.1.18 GO:0004364 ... P46427 15640152
    53550 1tu9:A (1.2) BS01 HEM ? GO:0019825 ... Q9HX49 N/A
    53551 1tub:A (3.7) BS01 GTP 3.6.5.- GO:0000226 ... P02550 9428769
    53552 1tub:B (3.7) BS01 GTP ? GO:0000226 ... P02554 9428769
    53553 1tub:B (3.7) BS02 GDP ? GO:0000226 ... P02554 9428769
    53554 1tub:B (3.7) BS03 TXL ? GO:0000226 ... P02554 9428769
    53555 1tuf:A (2.4) BS01 AZ1 4.1.1.20 GO:0003824 ... Q58497 12429091 MOAD: Ki=89uM
    53556 1tuf:B (2.4) BS01 AZ1 4.1.1.20 GO:0003824 ... Q58497 12429091 MOAD: Ki=89uM
    53557 1tug:A (2.1) BS01 MLI 2.1.3.2 GO:0004070 ... P0A786 15288791
    53558 1tug:A (2.1) BS02 PCT 2.1.3.2 GO:0004070 ... P0A786 15288791
    53559 1tug:B (2.1) BS01 ZN ? GO:0005515 ... P0A7F3 15288791
    53560 1tug:B (2.1) BS02 CTP ? GO:0005515 ... P0A7F3 15288791
    53561 1tug:C (2.1) BS01 PCT 2.1.3.2 GO:0004070 ... P0A786 15288791
    53562 1tug:D (2.1) BS01 ZN ? GO:0005515 ... P0A7F3 15288791
    53563 1tug:D (2.1) BS02 CTP ? GO:0005515 ... P0A7F3 15288791
    53564 1tui:A (2.7) BS01 MG ? GO:0000287 ... Q01698 8939739
    53565 1tui:A (2.7) BS02 GDP ? GO:0000287 ... Q01698 8939739
    53566 1tui:B (2.7) BS01 GDP ? GO:0000287 ... Q01698 8939739
    53567 1tui:C (2.7) BS01 GDP ? GO:0000287 ... Q01698 8939739
    53568 1tuj:A (-1.00) BS01 TSD N/A GO:0005549 ... N/A N/A
    53569 1tuk:A (1.12) BS01 PGM ? GO:0006869 ... P82900 15805594
    53570 1tum:A (-1.00) BS01 MG 3.6.1.55 GO:0000287 ... P08337 9063868
    53571 1tum:A (-1.00) BS02 APC 3.6.1.55 GO:0000287 ... P08337 9063868
    53572 1tup:A (2.2) BS01 dna ? GO:0000976 ... P04637 8023157
    53573 1tup:A (2.2) BS02 ZN ? GO:0000976 ... P04637 8023157
    53574 1tup:B (2.2) BS01 dna ? GO:0000976 ... P04637 8023157
    53575 1tup:B (2.2) BS02 dna ? GO:0000976 ... P04637 8023157
    53576 1tup:B (2.2) BS03 ZN ? GO:0000976 ... P04637 8023157
    53577 1tup:C (2.2) BS01 dna ? GO:0000976 ... P04637 8023157
    53578 1tup:C (2.2) BS02 ZN ? GO:0000976 ... P04637 8023157
    53579 1tuu:A (2.5) BS01 SO4 2.7.2.1 GO:0000287 ... P38502 15647264
    53580 1tuu:A (2.5) BS02 ADP 2.7.2.1 GO:0000287 ... P38502 15647264
    53581 1tuu:B (2.5) BS01 AMP 2.7.2.1 GO:0000287 ... P38502 15647264
    53582 1tuu:B (2.5) BS02 PIS 2.7.2.1 GO:0000287 ... P38502 15647264
    53583 1tuv:A (1.7) BS01 VK3 1.-.-.- GO:0005829 ... P0ADU2 15613473
    53584 1tuy:A (3.0) BS01 SO4 2.7.2.1 GO:0000287 ... P38502 15647264
    53585 1tuy:A (3.0) BS02 ADP 2.7.2.1 GO:0000287 ... P38502 15647264
    53586 1tuy:B (3.0) BS01 ADP 2.7.2.1 GO:0000287 ... P38502 15647264
    53587 1tv2:A (2.0) BS01 BG5 2.1.1.248 GO:0008168 ... O30642 15380192
    53588 1tv3:A (2.2) BS01 BG4 2.1.1.248 GO:0008168 ... O30642 15380192
    53589 1tv4:A (1.8) BS01 BG3 2.1.1.248 GO:0008168 ... O30642 15380192
    53590 1tv5:A (2.4) BS01 A26 1.3.5.2 GO:0004152 ... Q08210 16510978 MOAD: Ki~1000nM
    BindingDB: IC50=190546nM
    53591 1tv5:A (2.4) BS02 FMN 1.3.5.2 GO:0004152 ... Q08210 16510978
    53592 1tv6:A (2.8) BS01 CP9 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 15249669
    53593 1tv7:A (2.8) BS01 SF4 4.1.99.22 GO:0003824 ... P69848 15317939
    53594 1tv7:A (2.8) BS02 SF4 4.1.99.22 GO:0003824 ... P69848 15317939
    53595 1tv7:B (2.8) BS01 SF4 4.1.99.22 GO:0003824 ... P69848 15317939
    53596 1tv7:B (2.8) BS02 SF4 4.1.99.22 GO:0003824 ... P69848 15317939
    53597 1tv8:A (2.2) BS01 SAM 4.1.99.22 GO:0003824 ... P65388 15317939
    53598 1tv8:A (2.2) BS02 SF4 4.1.99.22 GO:0003824 ... P65388 15317939
    53599 1tv8:A (2.2) BS03 SF4 4.1.99.22 GO:0003824 ... P65388 15317939
    53600 1tv8:B (2.2) BS01 SAM 4.1.99.22 GO:0003824 ... P65388 15317939

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).