SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    545801 6s8b:K (2.41) BS05 MN ? GO:0016020 ... F0NDX2 32730741
    545802 6s8b:K (2.41) BS06 MN ? GO:0016020 ... F0NDX2 32730741
    545803 6s8b:t (2.41) BS01 rna ? GO:0051607 ... F0NDX7 32730741
    545804 6s8b:t (2.41) BS02 rna ? GO:0051607 ... F0NDX7 32730741
    545805 6s8e:A (3.1) BS01 rna ? GO:0005737 ... F0NDX5 32730741
    545806 6s8e:B (3.1) BS01 rna ? GO:0005737 ... F0NDX5 32730741
    545807 6s8e:C (3.1) BS01 rna ? GO:0005737 ... F0NDX5 32730741
    545808 6s8e:D (3.1) BS01 rna ? GO:0051607 ... F0NDX6 32730741
    545809 6s8e:D (3.1) BS02 rna ? GO:0051607 ... F0NDX6 32730741
    545810 6s8e:E (3.1) BS01 rna ? GO:0051607 ... F0NDX6 32730741
    545811 6s8e:E (3.1) BS02 rna ? GO:0051607 ... F0NDX6 32730741
    545812 6s8e:F (3.1) BS01 rna ? GO:0051607 ... F0NDX6 32730741
    545813 6s8e:F (3.1) BS02 rna ? GO:0051607 ... F0NDX6 32730741
    545814 6s8e:G (3.1) BS01 rna ? GO:0051607 ... F0NDX6 32730741
    545815 6s8e:G (3.1) BS02 rna ? GO:0051607 ... F0NDX6 32730741
    545816 6s8e:H (3.1) BS01 rna ? N/A F0NDX1 32730741
    545817 6s8e:H (3.1) BS02 rna ? N/A F0NDX1 32730741
    545818 6s8e:I (3.1) BS01 rna ? GO:0051607 ... F0NDX3 32730741
    545819 6s8e:I (3.1) BS02 rna ? GO:0051607 ... F0NDX3 32730741
    545820 6s8e:J (3.1) BS01 rna ? GO:0051607 ... F0NDX4 32730741
    545821 6s8e:J (3.1) BS02 rna ? GO:0051607 ... F0NDX4 32730741
    545822 6s8e:K (3.1) BS01 rna ? GO:0016020 ... F0NDX2 32730741
    545823 6s8e:K (3.1) BS02 ZN ? GO:0016020 ... F0NDX2 32730741
    545824 6s8e:t (3.1) BS01 rna ? GO:0051607 ... F0NDX7 32730741
    545825 6s8f:F (4.0) BS01 ANP 2.7.11.1 GO:0004674 ... P38110 31740029
    545826 6s8f:H (4.0) BS01 ANP 2.7.11.1 GO:0004674 ... P38110 31740029
    545827 6s8g:A (3.5) BS01 ANP 7.5.2.- GO:0005524 ... P0A9V4 31519889
    545828 6s8g:A (3.5) BS02 ANP 7.5.2.- GO:0005524 ... P0A9V4 31519889
    545829 6s8g:B (3.5) BS01 ANP 7.5.2.- GO:0005524 ... P0A9V4 31519889
    545830 6s8g:B (3.5) BS02 ANP 7.5.2.- GO:0005524 ... P0A9V4 31519889
    545831 6s8g:F (3.5) BS01 LMD ? GO:0005886 ... P0AFA1 31519889
    545832 6s8g:G (3.5) BS01 LMD ? GO:0005886 ... A0A0H2V3J7 31519889
    545833 6s8h:F (3.7) BS01 LMN ? GO:0005886 ... P0AFA1 31519889
    545834 6s8h:F (3.7) BS02 JSG ? GO:0005886 ... P0AFA1 31519889
    545835 6s8h:F (3.7) BS03 DCQ ? GO:0005886 ... P0AFA1 31519889
    545836 6s8h:G (3.7) BS01 JSG ? GO:0005886 ... A0A0H2V3J7 31519889
    545837 6s8h:G (3.7) BS02 LMN ? GO:0005886 ... A0A0H2V3J7 31519889
    545838 6s8k:A (1.52) BS01 GTP 3.6.5.- GO:0000226 ... P81947 N/A
    545839 6s8k:B (1.52) BS01 PN6 ? GO:0000226 ... Q6B856 N/A
    545840 6s8k:B (1.52) BS02 GDP ? GO:0000226 ... Q6B856 N/A
    545841 6s8l:A (1.801) BS01 GTP 3.6.5.- GO:0000226 ... P68363 N/A
    545842 6s8l:B (1.801) BS01 PN6 ? GO:0000226 ... Q13509 N/A
    545843 6s8l:B (1.801) BS02 GDP ? GO:0000226 ... Q13509 N/A
    545844 6s8m:A (4.5) BS01 GTP 3.6.5.- GO:0000226 ... P04688 30659798
    545845 6s8m:B (4.5) BS01 GDP ? GO:0000022 ... P05219 30659798
    545846 6s8m:B (4.5) BS02 EPB ? GO:0000022 ... P05219 30659798
    545847 6s8m:K (4.5) BS01 MG ? GO:0003777 ... P24339 30659798
    545848 6s8m:K (4.5) BS02 ANP ? GO:0003777 ... P24339 30659798
    545849 6s8n:B (3.1) BS01 DCQ 7.5.2.- GO:0005524 ... P0A9V4 31519889
    545850 6s8n:F (3.1) BS01 peptide ? GO:0005886 ... P0AFA1 31519889
    545851 6s8n:F (3.1) BS02 DCQ ? GO:0005886 ... P0AFA1 31519889
    545852 6s8n:F (3.1) BS03 L0W ? GO:0005886 ... P0AFA1 31519889
    545853 6s8n:F (3.1) BS04 LMN ? GO:0005886 ... P0AFA1 31519889
    545854 6s8n:G (3.1) BS01 L0W ? GO:0005886 ... A0A0H2V3J7 31519889
    545855 6s8n:G (3.1) BS02 LMN ? GO:0005886 ... A0A0H2V3J7 31519889
    545856 6s8r:A (2.41) BS01 peptide 3.6.4.13 N/A P23128 31439631
    545857 6s8w:A (2.4) BS01 PLP 2.6.1.- GO:0005575 ... Q4X0F7 N/A
    545858 6s8w:B (2.4) BS01 PLP 2.6.1.- GO:0005575 ... Q4X0F7 N/A
    545859 6s8w:C (2.4) BS01 PLP 2.6.1.- GO:0005575 ... Q4X0F7 N/A
    545860 6s8w:D (2.4) BS01 PLP 2.6.1.- GO:0005575 ... Q4X0F7 N/A
    545861 6s8y:A (2.09) BS01 HEC ? GO:0005515 ... P00044 31460523
    545862 6s8y:A (2.09) BS02 ZN ? GO:0005515 ... P00044 31460523
    545863 6s8y:A (2.09) BS03 L0T ? GO:0005515 ... P00044 31460523
    545864 6s90:A (1.82) BS01 L0Z 2.7.10.2 GO:0004672 ... Q06187 31620235 MOAD: ic50=13nM
    BindingDB: IC50=13nM
    545865 6s90:B (1.82) BS01 L0Z 2.7.10.2 GO:0004672 ... Q06187 31620235 MOAD: ic50=13nM
    BindingDB: IC50=13nM
    545866 6s91:A (2.68) BS01 rna ? GO:0005737 ... F0NDX5 32730741
    545867 6s91:B (2.68) BS01 rna ? GO:0005737 ... F0NDX5 32730741
    545868 6s91:C (2.68) BS01 rna ? GO:0005737 ... F0NDX5 32730741
    545869 6s91:D (2.68) BS01 rna ? GO:0051607 ... F0NDX6 32730741
    545870 6s91:D (2.68) BS02 rna ? GO:0051607 ... F0NDX6 32730741
    545871 6s91:E (2.68) BS01 rna ? GO:0051607 ... F0NDX6 32730741
    545872 6s91:E (2.68) BS02 rna ? GO:0051607 ... F0NDX6 32730741
    545873 6s91:F (2.68) BS01 rna ? GO:0051607 ... F0NDX6 32730741
    545874 6s91:F (2.68) BS02 rna ? GO:0051607 ... F0NDX6 32730741
    545875 6s91:G (2.68) BS01 rna ? GO:0051607 ... F0NDX6 32730741
    545876 6s91:G (2.68) BS02 rna ? GO:0051607 ... F0NDX6 32730741
    545877 6s91:H (2.68) BS01 rna ? N/A F0NDX1 32730741
    545878 6s91:I (2.68) BS01 rna ? GO:0051607 ... F0NDX3 32730741
    545879 6s91:I (2.68) BS02 rna ? GO:0051607 ... F0NDX3 32730741
    545880 6s91:J (2.68) BS01 rna ? GO:0051607 ... F0NDX4 32730741
    545881 6s91:J (2.68) BS02 rna ? GO:0051607 ... F0NDX4 32730741
    545882 6s91:K (2.68) BS01 rna ? GO:0016020 ... F0NDX2 32730741
    545883 6s91:K (2.68) BS02 rna ? GO:0016020 ... F0NDX2 32730741
    545884 6s91:K (2.68) BS03 ZN ? GO:0016020 ... F0NDX2 32730741
    545885 6s91:K (2.68) BS04 ANP ? GO:0016020 ... F0NDX2 32730741
    545886 6s91:K (2.68) BS05 ANP ? GO:0016020 ... F0NDX2 32730741
    545887 6s91:K (2.68) BS06 MN ? GO:0016020 ... F0NDX2 32730741
    545888 6s91:K (2.68) BS07 MN ? GO:0016020 ... F0NDX2 32730741
    545889 6s91:t (2.68) BS01 rna ? GO:0051607 ... F0NDX7 32730741
    545890 6s99:A (2.649) BS01 BMA ? GO:0030246 ... A0A0S4TLR1 34432924
    545891 6s99:A (2.649) BS02 BMA ? GO:0030246 ... A0A0S4TLR1 34432924
    545892 6s99:A (2.649) BS03 QQ7 ? GO:0030246 ... A0A0S4TLR1 34432924
    545893 6s99:A (2.649) BS04 BMA ? GO:0030246 ... A0A0S4TLR1 34432924
    545894 6s99:B (2.649) BS01 BMA ? GO:0030246 ... A0A0S4TLR1 34432924
    545895 6s99:B (2.649) BS02 BMA ? GO:0030246 ... A0A0S4TLR1 34432924
    545896 6s99:B (2.649) BS03 QQ7 ? GO:0030246 ... A0A0S4TLR1 34432924
    545897 6s99:B (2.649) BS04 BMA ? GO:0030246 ... A0A0S4TLR1 34432924
    545898 6s99:C (2.649) BS01 BMA ? GO:0030246 ... A0A0S4TLR1 34432924
    545899 6s99:C (2.649) BS02 BMA ? GO:0030246 ... A0A0S4TLR1 34432924
    545900 6s99:C (2.649) BS03 BMA ? GO:0030246 ... A0A0S4TLR1 34432924
    545901 6s99:C (2.649) BS04 QQ7 ? GO:0030246 ... A0A0S4TLR1 34432924
    545902 6s99:D (2.649) BS01 BMA ? GO:0030246 ... A0A0S4TLR1 34432924
    545903 6s99:D (2.649) BS02 BMA ? GO:0030246 ... A0A0S4TLR1 34432924
    545904 6s99:D (2.649) BS03 QQ7 ? GO:0030246 ... A0A0S4TLR1 34432924
    545905 6s99:D (2.649) BS04 BMA ? GO:0030246 ... A0A0S4TLR1 34432924
    545906 6s99:E (2.649) BS01 BMA ? GO:0030246 ... A0A0S4TLR1 34432924
    545907 6s99:E (2.649) BS02 BMA ? GO:0030246 ... A0A0S4TLR1 34432924
    545908 6s99:E (2.649) BS03 QQ7 ? GO:0030246 ... A0A0S4TLR1 34432924
    545909 6s99:E (2.649) BS04 BMA ? GO:0030246 ... A0A0S4TLR1 34432924
    545910 6s99:F (2.649) BS01 BMA ? GO:0030246 ... A0A0S4TLR1 34432924
    545911 6s99:F (2.649) BS02 BMA ? GO:0030246 ... A0A0S4TLR1 34432924
    545912 6s99:F (2.649) BS03 BMA ? GO:0030246 ... A0A0S4TLR1 34432924
    545913 6s99:F (2.649) BS04 QQ7 ? GO:0030246 ... A0A0S4TLR1 34432924
    545914 6s9a:A (1.86) BS01 ZN 3.6.5.5 GO:0003924 ... Q05193 34244431
    545915 6s9a:B (1.86) BS01 ZN 3.6.5.5 GO:0003924 ... Q05193 34244431
    545916 6s9b:A (3.25) BS01 L1H 2.7.10.1 GO:0004672 ... P00533 31689114
    545917 6s9c:A (2.73) BS01 L1K 2.7.10.1 GO:0004672 ... P00533 31689114
    545918 6s9d:A (2.67) BS01 L3Z 2.7.10.1 GO:0004672 ... P00533 31689114
    545919 6s9e:A (2.25) BS01 GTP 3.6.5.- GO:0000226 ... P81947 32151315
    545920 6s9e:A (2.25) BS02 CA 3.6.5.- GO:0000226 ... P81947 32151315
    545921 6s9e:B (2.25) BS01 GDP ? GO:0000226 ... Q6B856 32151315
    545922 6s9e:B (2.25) BS02 AF3 ? GO:0000226 ... Q6B856 32151315
    545923 6s9e:C (2.25) BS01 GTP 3.6.5.- GO:0000226 ... P81947 32151315
    545924 6s9e:C (2.25) BS02 CA 3.6.5.- GO:0000226 ... P81947 32151315
    545925 6s9e:D (2.25) BS01 GDP ? GO:0000226 ... Q6B856 32151315
    545926 6s9e:D (2.25) BS02 MG ? GO:0000226 ... Q6B856 32151315
    545927 6s9e:F (2.25) BS01 ACP N/A GO:0036211 ... N/A 32151315
    545928 6s9e:F (2.25) BS02 MG N/A GO:0036211 ... N/A 32151315
    545929 6s9f:A (1.969) BS01 SO4 ? N/A Q6AWJ9 32187531
    545930 6s9f:A (1.969) BS02 SO4 ? N/A Q6AWJ9 32187531
    545931 6s9f:B (1.969) BS01 SO4 ? N/A Q6AWJ9 32187531
    545932 6s9g:A (1.14) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32230853
    545933 6s9g:A (1.14) BS02 BGC 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32230853
    545934 6s9g:A (1.14) BS03 L1Q 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32230853
    545935 6s9g:A (1.14) BS04 L1Q 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32230853
    545936 6s9k:A (1.6) BS01 peptide ? GO:0002842 ... P61981 31961068
    545937 6s9k:A (1.6) BS02 CFH ? GO:0002842 ... P61981 31961068
    545938 6s9k:A (1.6) BS03 CFH ? GO:0002842 ... P61981 31961068
    545939 6s9l:A (2.1) BS01 peptide N/A N/A N/A 31985201
    545940 6s9l:B (2.1) BS01 peptide N/A N/A N/A 31985201
    545941 6s9m:A (2.0) BS01 CA N/A N/A N/A 31985201
    545942 6s9m:A (2.0) BS02 CA N/A N/A N/A 31985201
    545943 6s9m:A (2.0) BS03 CA N/A N/A N/A 31985201
    545944 6s9m:A (2.0) BS04 CA N/A N/A N/A 31985201
    545945 6s9m:A (2.0) BS05 CA N/A N/A N/A 31985201
    545946 6s9m:B (2.0) BS01 CA N/A N/A N/A 31985201
    545947 6s9m:B (2.0) BS02 CA N/A N/A N/A 31985201
    545948 6s9m:B (2.0) BS03 CA N/A N/A N/A 31985201
    545949 6s9m:B (2.0) BS04 CA N/A N/A N/A 31985201
    545950 6s9m:B (2.0) BS05 CA N/A N/A N/A 31985201
    545951 6s9m:B (2.0) BS06 CA N/A N/A N/A 31985201
    545952 6s9m:C (2.0) BS01 CA N/A N/A N/A 31985201
    545953 6s9m:C (2.0) BS02 CA N/A N/A N/A 31985201
    545954 6s9m:C (2.0) BS03 CA N/A N/A N/A 31985201
    545955 6s9m:C (2.0) BS04 CA N/A N/A N/A 31985201
    545956 6s9m:C (2.0) BS05 CA N/A N/A N/A 31985201
    545957 6s9m:C (2.0) BS06 CA N/A N/A N/A 31985201
    545958 6s9m:D (2.0) BS01 CA N/A N/A N/A 31985201
    545959 6s9m:D (2.0) BS02 CA N/A N/A N/A 31985201
    545960 6s9m:D (2.0) BS03 CA N/A N/A N/A 31985201
    545961 6s9m:E (2.0) BS01 CA N/A N/A N/A 31985201
    545962 6s9m:E (2.0) BS02 CA N/A N/A N/A 31985201
    545963 6s9m:E (2.0) BS03 CA N/A N/A N/A 31985201
    545964 6s9m:E (2.0) BS04 CA N/A N/A N/A 31985201
    545965 6s9m:E (2.0) BS05 CA N/A N/A N/A 31985201
    545966 6s9m:E (2.0) BS06 CA N/A N/A N/A 31985201
    545967 6s9m:F (2.0) BS01 CA N/A N/A N/A 31985201
    545968 6s9m:F (2.0) BS02 CA N/A N/A N/A 31985201
    545969 6s9m:F (2.0) BS03 CA N/A N/A N/A 31985201
    545970 6s9n:A (2.1) BS01 CA N/A N/A N/A 31985201
    545971 6s9n:A (2.1) BS02 CA N/A N/A N/A 31985201
    545972 6s9n:A (2.1) BS03 CA N/A N/A N/A 31985201
    545973 6s9n:A (2.1) BS04 CA N/A N/A N/A 31985201
    545974 6s9n:A (2.1) BS05 CA N/A N/A N/A 31985201
    545975 6s9n:B (2.1) BS01 CA N/A N/A N/A 31985201
    545976 6s9n:B (2.1) BS02 CA N/A N/A N/A 31985201
    545977 6s9n:B (2.1) BS03 CA N/A N/A N/A 31985201
    545978 6s9n:B (2.1) BS04 CA N/A N/A N/A 31985201
    545979 6s9n:B (2.1) BS05 CA N/A N/A N/A 31985201
    545980 6s9n:C (2.1) BS01 CA N/A N/A N/A 31985201
    545981 6s9n:C (2.1) BS02 CA N/A N/A N/A 31985201
    545982 6s9n:C (2.1) BS03 CA N/A N/A N/A 31985201
    545983 6s9n:C (2.1) BS04 CA N/A N/A N/A 31985201
    545984 6s9n:C (2.1) BS05 CA N/A N/A N/A 31985201
    545985 6s9n:D (2.1) BS01 CA N/A N/A N/A 31985201
    545986 6s9n:E (2.1) BS01 CA N/A N/A N/A 31985201
    545987 6s9n:E (2.1) BS02 CA N/A N/A N/A 31985201
    545988 6s9n:E (2.1) BS03 CA N/A N/A N/A 31985201
    545989 6s9n:E (2.1) BS04 CA N/A N/A N/A 31985201
    545990 6s9n:E (2.1) BS05 CA N/A N/A N/A 31985201
    545991 6s9n:E (2.1) BS06 CA N/A N/A N/A 31985201
    545992 6s9n:F (2.1) BS01 CA N/A N/A N/A 31985201
    545993 6s9n:F (2.1) BS02 CA N/A N/A N/A 31985201
    545994 6s9n:F (2.1) BS03 CA N/A N/A N/A 31985201
    545995 6s9n:F (2.1) BS04 CA N/A N/A N/A 31985201
    545996 6s9n:F (2.1) BS05 CA N/A N/A N/A 31985201
    545997 6s9n:F (2.1) BS06 CA N/A N/A N/A 31985201
    545998 6s9o:A (3.17) BS01 CA N/A N/A N/A 31985201
    545999 6s9o:A (3.17) BS02 CA N/A N/A N/A 31985201
    546000 6s9o:A (3.17) BS03 CA N/A N/A N/A 31985201

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).