SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    54801 1ubj:L (1.35) BS03 FNE 1.12.2.1 GO:0008901 ... P21852 12296727
    54802 1ubj:L (1.35) BS04 CMO 1.12.2.1 GO:0008901 ... P21852 12296727
    54803 1ubj:S (1.35) BS01 SF4 1.12.2.1 GO:0008901 ... P21853 12296727
    54804 1ubj:S (1.35) BS02 SF4 1.12.2.1 GO:0008901 ... P21853 12296727
    54805 1ubj:S (1.35) BS03 F3S 1.12.2.1 GO:0008901 ... P21853 12296727
    54806 1ubk:L (1.18) BS01 SF4 1.12.2.1 GO:0008901 ... P21852 12296727
    54807 1ubk:L (1.18) BS02 MG 1.12.2.1 GO:0008901 ... P21852 12296727
    54808 1ubk:L (1.18) BS03 FNE 1.12.2.1 GO:0008901 ... P21852 12296727
    54809 1ubk:L (1.18) BS04 CMO 1.12.2.1 GO:0008901 ... P21852 12296727
    54810 1ubk:S (1.18) BS01 SF4 1.12.2.1 GO:0008901 ... P21853 12296727
    54811 1ubk:S (1.18) BS02 SF4 1.12.2.1 GO:0008901 ... P21853 12296727
    54812 1ubk:S (1.18) BS03 F3S 1.12.2.1 GO:0008901 ... P21853 12296727
    54813 1ubl:L (1.2) BS01 SF4 1.12.2.1 GO:0008901 ... P21852 12296727
    54814 1ubl:L (1.2) BS02 MG 1.12.2.1 GO:0008901 ... P21852 12296727
    54815 1ubl:L (1.2) BS03 FNE 1.12.2.1 GO:0008901 ... P21852 12296727
    54816 1ubl:L (1.2) BS04 CMO 1.12.2.1 GO:0008901 ... P21852 12296727
    54817 1ubl:S (1.2) BS01 SF4 1.12.2.1 GO:0008901 ... P21853 12296727
    54818 1ubl:S (1.2) BS02 SF4 1.12.2.1 GO:0008901 ... P21853 12296727
    54819 1ubl:S (1.2) BS03 F3S 1.12.2.1 GO:0008901 ... P21853 12296727
    54820 1ubm:L (1.4) BS01 SF4 1.12.2.1 GO:0008901 ... P21852 12296727
    54821 1ubm:L (1.4) BS02 MG 1.12.2.1 GO:0008901 ... P21852 12296727
    54822 1ubm:L (1.4) BS03 FNE 1.12.2.1 GO:0008901 ... P21852 12296727
    54823 1ubm:S (1.4) BS01 SF4 1.12.2.1 GO:0008901 ... P21853 12296727
    54824 1ubm:S (1.4) BS02 SF4 1.12.2.1 GO:0008901 ... P21853 12296727
    54825 1ubm:S (1.4) BS03 F3S 1.12.2.1 GO:0008901 ... P21853 12296727
    54826 1ubn:A (2.4) BS01 CA 3.4.21.62 GO:0004252 ... P00782 10350485
    54827 1ubn:A (2.4) BS02 CA 3.4.21.62 GO:0004252 ... P00782 10350485
    54828 1ubo:L (1.35) BS01 SF4 1.12.2.1 GO:0008901 ... P21852 12296727
    54829 1ubo:L (1.35) BS02 MG 1.12.2.1 GO:0008901 ... P21852 12296727
    54830 1ubo:L (1.35) BS03 FNE 1.12.2.1 GO:0008901 ... P21852 12296727
    54831 1ubo:L (1.35) BS04 CMO 1.12.2.1 GO:0008901 ... P21852 12296727
    54832 1ubo:S (1.35) BS01 SF4 1.12.2.1 GO:0008901 ... P21853 12296727
    54833 1ubo:S (1.35) BS02 SF4 1.12.2.1 GO:0008901 ... P21853 12296727
    54834 1ubo:S (1.35) BS03 F3S 1.12.2.1 GO:0008901 ... P21853 12296727
    54835 1ubp:C (1.65) BS01 NI 3.5.1.5 GO:0005737 ... P41020 N/A
    54836 1ubp:C (1.65) BS02 NI 3.5.1.5 GO:0005737 ... P41020 N/A
    54837 1ubr:L (1.34) BS01 SF4 1.12.2.1 GO:0008901 ... P21852 12296727
    54838 1ubr:L (1.34) BS02 MG 1.12.2.1 GO:0008901 ... P21852 12296727
    54839 1ubr:L (1.34) BS03 FNE 1.12.2.1 GO:0008901 ... P21852 12296727
    54840 1ubr:L (1.34) BS04 CMO 1.12.2.1 GO:0008901 ... P21852 12296727
    54841 1ubr:S (1.34) BS01 SF4 1.12.2.1 GO:0008901 ... P21853 12296727
    54842 1ubr:S (1.34) BS02 SF4 1.12.2.1 GO:0008901 ... P21853 12296727
    54843 1ubr:S (1.34) BS03 F3S 1.12.2.1 GO:0008901 ... P21853 12296727
    54844 1ubs:B (1.9) BS01 SER 4.2.1.20 GO:0000162 ... P0A2K1 9201907
    54845 1ubs:B (1.9) BS02 PLP 4.2.1.20 GO:0000162 ... P0A2K1 9201907
    54846 1ubt:L (1.34) BS01 SF4 1.12.2.1 GO:0008901 ... P21852 12296727
    54847 1ubt:L (1.34) BS02 MG 1.12.2.1 GO:0008901 ... P21852 12296727
    54848 1ubt:L (1.34) BS03 FNE 1.12.2.1 GO:0008901 ... P21852 12296727
    54849 1ubt:S (1.34) BS01 SF4 1.12.2.1 GO:0008901 ... P21853 12296727
    54850 1ubt:S (1.34) BS02 SF4 1.12.2.1 GO:0008901 ... P21853 12296727
    54851 1ubt:S (1.34) BS03 F3S 1.12.2.1 GO:0008901 ... P21853 12296727
    54852 1ubu:L (1.35) BS01 SF4 1.12.2.1 GO:0008901 ... P21852 12296727
    54853 1ubu:L (1.35) BS02 MG 1.12.2.1 GO:0008901 ... P21852 12296727
    54854 1ubu:L (1.35) BS03 FNE 1.12.2.1 GO:0008901 ... P21852 12296727
    54855 1ubu:S (1.35) BS01 SF4 1.12.2.1 GO:0008901 ... P21853 12296727
    54856 1ubu:S (1.35) BS02 SF4 1.12.2.1 GO:0008901 ... P21853 12296727
    54857 1ubu:S (1.35) BS03 F3S 1.12.2.1 GO:0008901 ... P21853 12296727
    54858 1ubw:A (2.5) BS01 MG 2.5.1.1
    2.5.1.10
    GO:0004161 ... P08836 8986756
    54859 1ubw:A (2.5) BS02 MG 2.5.1.1
    2.5.1.10
    GO:0004161 ... P08836 8986756
    54860 1ubw:A (2.5) BS03 GPP 2.5.1.1
    2.5.1.10
    GO:0004161 ... P08836 8986756
    54861 1ubx:A (2.5) BS01 MG 2.5.1.1
    2.5.1.10
    GO:0004161 ... P08836 8986756
    54862 1ubx:A (2.5) BS02 FPP 2.5.1.1
    2.5.1.10
    GO:0004161 ... P08836 8986756
    54863 1uby:A (2.4) BS01 MG 2.5.1.1
    2.5.1.10
    GO:0004161 ... P08836 8986756
    54864 1uby:A (2.4) BS02 MG 2.5.1.1
    2.5.1.10
    GO:0004161 ... P08836 8986756
    54865 1uby:A (2.4) BS03 DMA 2.5.1.1
    2.5.1.10
    GO:0004161 ... P08836 8986756
    54866 1ubz:A (2.0) BS01 GAL 3.2.1.17 GO:0003796 ... P61626 12720276
    54867 1uc0:A (1.85) BS01 GAL 3.2.1.17 GO:0003796 ... P00698 12720276
    54868 1uc2:A (2.15) BS01 GLC 3.1.-.-
    6.5.1.8
    GO:0006396 ... O59245 16485279
    54869 1uc2:A (2.15) BS02 FRU 3.1.-.-
    6.5.1.8
    GO:0006396 ... O59245 16485279
    54870 1uc2:B (2.15) BS01 FRU 3.1.-.-
    6.5.1.8
    GO:0006396 ... O59245 16485279
    54871 1uc3:A (2.3) BS01 HEM ? GO:0005506 ... P02207 N/A
    54872 1uc3:B (2.3) BS01 HEM ? GO:0005506 ... P02207 N/A
    54873 1uc3:C (2.3) BS01 HEM ? GO:0005506 ... P02207 N/A
    54874 1uc3:D (2.3) BS01 HEM ? GO:0005506 ... P02207 N/A
    54875 1uc3:E (2.3) BS01 HEM ? GO:0005506 ... P02207 N/A
    54876 1uc3:F (2.3) BS01 HEM ? GO:0005506 ... P02207 N/A
    54877 1uc3:G (2.3) BS01 HEM ? GO:0005506 ... P02207 N/A
    54878 1uc3:H (2.3) BS01 HEM ? GO:0005506 ... P02207 N/A
    54879 1uc3:I (2.3) BS01 HEM ? GO:0005506 ... P02207 N/A
    54880 1uc3:J (2.3) BS01 HEM ? GO:0005506 ... P02207 N/A
    54881 1uc3:K (2.3) BS01 HEM ? GO:0005506 ... P02207 N/A
    54882 1uc3:L (2.3) BS01 HEM ? GO:0005506 ... P02207 N/A
    54883 1uc4:A (1.8) BS01 CNC 4.2.1.28 GO:0003824 ... Q59470 12684496
    54884 1uc4:B (1.8) BS01 CNC 4.2.1.28 GO:0050215 ... Q59471 12684496
    54885 1uc4:E (1.8) BS01 CNC 4.2.1.28 GO:0050215 ... Q59471 12684496
    54886 1uc4:L (1.8) BS01 CNC 4.2.1.28 GO:0003824 ... Q59470 12684496
    54887 1uc5:A (2.3) BS01 CNC 4.2.1.28 GO:0003824 ... Q59470 12684496
    54888 1uc5:B (2.3) BS01 CNC 4.2.1.28 GO:0050215 ... Q59471 12684496
    54889 1uc5:E (2.3) BS01 CNC 4.2.1.28 GO:0050215 ... Q59471 12684496
    54890 1uc5:L (2.3) BS01 CNC 4.2.1.28 GO:0003824 ... Q59470 12684496
    54891 1uc9:A (2.38) BS01 ADP 6.3.2.43 GO:0003824 ... Q5SH23 12963379
    54892 1uc9:B (2.38) BS01 ADP 6.3.2.43 GO:0003824 ... Q5SH23 12963379
    54893 1uca:A (1.48) BS01 U2P 4.6.1.19 GO:0003723 ... P23540 10964705
    54894 1ucc:A (1.77) BS01 U3P 4.6.1.19 GO:0003723 ... P23540 10964705
    54895 1ucd:A (1.3) BS01 U5P 4.6.1.19 GO:0003723 ... P23540 N/A
    54896 1ucd:A (1.3) BS02 URA 4.6.1.19 GO:0003723 ... P23540 N/A
    54897 1ucn:A (2.0) BS01 PO4 2.7.4.6 GO:0000287 ... P15531 12972261
    54898 1ucn:A (2.0) BS02 CA 2.7.4.6 GO:0000287 ... P15531 12972261
    54899 1ucn:A (2.0) BS03 ADP 2.7.4.6 GO:0000287 ... P15531 12972261 MOAD: Kd=6uM
    54900 1ucn:B (2.0) BS01 PO4 2.7.4.6 GO:0000287 ... P15531 12972261
    54901 1ucn:B (2.0) BS02 ADP 2.7.4.6 GO:0000287 ... P15531 12972261 MOAD: Kd=6uM
    54902 1ucn:C (2.0) BS01 PO4 2.7.4.6 GO:0000287 ... P15531 12972261
    54903 1ucn:C (2.0) BS02 ADP 2.7.4.6 GO:0000287 ... P15531 12972261 MOAD: Kd=6uM
    54904 1ucq:A (2.4) BS01 RET ? GO:0005216 ... P02945 14672661
    54905 1ucr:A (1.2) BS01 SO4 ? N/A Q46582 12962631
    54906 1ucr:A (1.2) BS02 SO4 ? N/A Q46582 12962631
    54907 1ucr:B (1.2) BS01 SO4 ? N/A Q46582 12962631
    54908 1ucr:B (1.2) BS02 SO4 ? N/A Q46582 12962631
    54909 1ucy:E (2.2) BS01 peptide 3.4.21.5 GO:0004252 ... P00735 8855938
    54910 1ucy:H (2.2) BS01 peptide 3.4.21.5 GO:0004252 ... P00735 8855938
    54911 1ucy:K (2.2) BS01 peptide 3.4.21.5 GO:0004252 ... P00735 8855938
    54912 1ucy:N (2.2) BS01 peptide 3.4.21.5 GO:0004252 ... P00735 8855938
    54913 1ud2:A (2.13) BS01 NA 3.2.1.1 GO:0004553 ... Q93I48 12719434
    54914 1ud2:A (2.13) BS02 NA 3.2.1.1 GO:0004553 ... Q93I48 12719434
    54915 1ud2:A (2.13) BS03 NA 3.2.1.1 GO:0004553 ... Q93I48 12719434
    54916 1ud3:A (2.15) BS01 NA 3.2.1.1 GO:0004553 ... Q93I48 12719434
    54917 1ud3:A (2.15) BS02 NA 3.2.1.1 GO:0004553 ... Q93I48 12719434
    54918 1ud4:A (2.15) BS01 NA 3.2.1.1 GO:0004553 ... Q93I48 12719434
    54919 1ud4:A (2.15) BS02 NA 3.2.1.1 GO:0004553 ... Q93I48 12719434
    54920 1ud4:A (2.15) BS03 NA 3.2.1.1 GO:0004553 ... Q93I48 12719434
    54921 1ud5:A (2.7) BS01 NA 3.2.1.1 GO:0004553 ... Q93I48 12719434
    54922 1ud5:A (2.7) BS02 NA 3.2.1.1 GO:0004553 ... Q93I48 12719434
    54923 1ud8:A (2.88) BS01 NA 3.2.1.1 GO:0004553 ... Q93I48 12719434
    54924 1ud8:A (2.88) BS02 NA 3.2.1.1 GO:0004553 ... Q93I48 12719434
    54925 1ud8:A (2.88) BS03 NA 3.2.1.1 GO:0004553 ... Q93I48 12719434
    54926 1ud9:A (1.68) BS01 ZN ? GO:0003677 ... Q975N2 N/A
    54927 1ud9:A (1.68) BS02 ZN ? GO:0003677 ... Q975N2 N/A
    54928 1ud9:A (1.68) BS03 ZN ? GO:0003677 ... Q975N2 N/A
    54929 1ud9:B (1.68) BS01 ZN ? GO:0003677 ... Q975N2 N/A
    54930 1ud9:B (1.68) BS02 ZN ? GO:0003677 ... Q975N2 N/A
    54931 1ud9:B (1.68) BS03 ZN ? GO:0003677 ... Q975N2 N/A
    54932 1ud9:C (1.68) BS01 ZN ? GO:0003677 ... Q975N2 N/A
    54933 1ud9:C (1.68) BS02 ZN ? GO:0003677 ... Q975N2 N/A
    54934 1ud9:D (1.68) BS01 ZN ? GO:0003677 ... Q975N2 N/A
    54935 1ud9:D (1.68) BS02 ZN ? GO:0003677 ... Q975N2 N/A
    54936 1ud9:D (1.68) BS03 ZN ? GO:0003677 ... Q975N2 N/A
    54937 1ud9:D (1.68) BS04 ZN ? GO:0003677 ... Q975N2 N/A
    54938 1uda:A (1.8) BS01 NAD 5.1.3.2 GO:0003978 ... P09147 9174344
    54939 1uda:A (1.8) BS02 UFG 5.1.3.2 GO:0003978 ... P09147 9174344 MOAD: Ki=1.4mM
    54940 1udb:A (1.65) BS01 NAD 5.1.3.2 GO:0003978 ... P09147 9174344
    54941 1udb:A (1.65) BS02 UFG 5.1.3.2 GO:0003978 ... P09147 9174344 MOAD: Ki=1.2mM
    54942 1udc:A (1.65) BS01 NAD 5.1.3.2 GO:0003978 ... P09147 9174344
    54943 1udc:A (1.65) BS02 UFM 5.1.3.2 GO:0003978 ... P09147 9174344
    54944 1udh:A (1.75) BS01 URA 3.2.2.27 GO:0004844 ... P10186 7845459
    54945 1udt:A (2.3) BS01 ZN 3.1.4.35 GO:0004114 ... O76074 12955149
    54946 1udt:A (2.3) BS02 VIA 3.1.4.35 GO:0004114 ... O76074 12955149 MOAD: Kd~0.5nM
    BindingDB: IC50=2.2nM, Ki=1.9nM, EC50=8.7nM
    54947 1udu:A (2.83) BS01 ZN 3.1.4.35 GO:0004114 ... O76074 12955149
    54948 1udu:A (2.83) BS02 CIA 3.1.4.35 GO:0004114 ... O76074 12955149 BindingDB: IC50=4nM, Ki=10nM
    54949 1udu:B (2.83) BS01 ZN 3.1.4.35 GO:0004114 ... O76074 12955149
    54950 1udu:B (2.83) BS02 MG 3.1.4.35 GO:0004114 ... O76074 12955149
    54951 1udu:B (2.83) BS03 CIA 3.1.4.35 GO:0004114 ... O76074 12955149 BindingDB: IC50=4nM, Ki=10nM
    54952 1udv:A (1.85) BS01 ZN ? GO:0003676 ... Q97ZF4 12837780
    54953 1udw:A (2.6) BS01 CTP 2.7.1.48 GO:0004849 ... Q9BZX2 15130468
    54954 1udw:B (2.6) BS01 CTP 2.7.1.48 GO:0004849 ... Q9BZX2 15130468
    54955 1udy:A (2.4) BS01 FAD 1.3.8.7 GO:0003995 ... P41367 12966080
    54956 1udy:A (2.4) BS02 CS8 1.3.8.7 GO:0003995 ... P41367 12966080
    54957 1udy:A (2.4) BS03 FAD 1.3.8.7 GO:0003995 ... P41367 12966080
    54958 1udy:B (2.4) BS01 FAD 1.3.8.7 GO:0003995 ... P41367 12966080
    54959 1udy:B (2.4) BS02 FAD 1.3.8.7 GO:0003995 ... P41367 12966080
    54960 1udy:B (2.4) BS03 CS8 1.3.8.7 GO:0003995 ... P41367 12966080
    54961 1udy:C (2.4) BS01 FAD 1.3.8.7 GO:0003995 ... P41367 12966080
    54962 1udy:C (2.4) BS02 CS8 1.3.8.7 GO:0003995 ... P41367 12966080
    54963 1udy:C (2.4) BS03 FAD 1.3.8.7 GO:0003995 ... P41367 12966080
    54964 1udy:D (2.4) BS01 FAD 1.3.8.7 GO:0003995 ... P41367 12966080
    54965 1udy:D (2.4) BS02 FAD 1.3.8.7 GO:0003995 ... P41367 12966080
    54966 1udy:D (2.4) BS03 CS8 1.3.8.7 GO:0003995 ... P41367 12966080
    54967 1ue0:A (2.0) BS01 VAL 6.1.1.5 GO:0002161 ... P56690 14672940
    54968 1ue8:A (3.0) BS01 HEM 1.14.-.- GO:0004497 ... Q972I2 15219985
    54969 1uea:A (2.8) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 9288970
    54970 1uea:A (2.8) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 9288970
    54971 1uea:A (2.8) BS03 CA 3.4.24.17 GO:0004222 ... P08254 9288970
    54972 1uea:A (2.8) BS04 CA 3.4.24.17 GO:0004222 ... P08254 9288970
    54973 1uea:A (2.8) BS05 CA 3.4.24.17 GO:0004222 ... P08254 9288970
    54974 1uea:C (2.8) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 9288970
    54975 1uea:C (2.8) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 9288970
    54976 1uea:C (2.8) BS03 CA 3.4.24.17 GO:0004222 ... P08254 9288970
    54977 1uea:C (2.8) BS04 CA 3.4.24.17 GO:0004222 ... P08254 9288970
    54978 1uea:C (2.8) BS05 CA 3.4.24.17 GO:0004222 ... P08254 9288970
    54979 1ued:A (1.9) BS01 HEM 1.14.-.- GO:0004497 ... Q8RN03 12888556
    54980 1ued:B (1.9) BS01 HEM 1.14.-.- GO:0004497 ... Q8RN03 12888556
    54981 1uef:A (2.5) BS01 peptide ? N/A P97465 14607833
    54982 1uef:B (2.5) BS01 peptide ? N/A P97465 14607833
    54983 1ueh:A (1.73) BS01 SO4 2.5.1.31 GO:0000287 ... P60472 12756244
    54984 1ueh:A (1.73) BS02 SO4 2.5.1.31 GO:0000287 ... P60472 12756244
    54985 1ueh:B (1.73) BS01 SO4 2.5.1.31 GO:0000287 ... P60472 12756244
    54986 1ueh:B (1.73) BS02 SO4 2.5.1.31 GO:0000287 ... P60472 12756244
    54987 1ueh:B (1.73) BS03 OXN 2.5.1.31 GO:0000287 ... P60472 12756244
    54988 1ueh:B (1.73) BS04 OXN 2.5.1.31 GO:0000287 ... P60472 12756244
    54989 1uei:A (2.6) BS01 UTP 2.7.1.48 GO:0004849 ... Q9BZX2 15130468
    54990 1uei:B (2.6) BS01 UTP 2.7.1.48 GO:0004849 ... Q9BZX2 15130468
    54991 1uej:A (2.61) BS01 CTN 2.7.1.48 GO:0004849 ... Q9BZX2 15130468
    54992 1uej:B (2.61) BS01 CTN 2.7.1.48 GO:0004849 ... Q9BZX2 15130468
    54993 1uer:A (1.6) BS01 FE 1.15.1.1 GO:0004784 ... P19665 12962504
    54994 1uer:B (1.6) BS01 FE 1.15.1.1 GO:0004784 ... P19665 12962504
    54995 1uer:C (1.6) BS01 FE 1.15.1.1 GO:0004784 ... P19665 12962504
    54996 1uer:D (1.6) BS01 FE 1.15.1.1 GO:0004784 ... P19665 12962504
    54997 1ues:A (1.6) BS01 MN 1.15.1.1 GO:0004784 ... P19665 12962504
    54998 1ues:B (1.6) BS01 MN 1.15.1.1 GO:0004784 ... P19665 12962504
    54999 1ues:C (1.6) BS01 MN 1.15.1.1 GO:0004784 ... P19665 12962504
    55000 1ues:D (1.6) BS01 MN 1.15.1.1 GO:0004784 ... P19665 12962504

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).