SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    62001 1ww7:C (1.9) BS01 SO4 3.1.21.- GO:0004536 ... Q6WY08 16051274
    62002 1ww9:A (1.95) BS01 FE2 1.14.12.- GO:0051537 ... Q84II6 16005887
    62003 1ww9:A (1.95) BS02 FES 1.14.12.- GO:0051537 ... Q84II6 16005887
    62004 1wwd:A (-1.00) BS01 rna ? GO:0003676 ... P03332 15751950
    62005 1wwd:A (-1.00) BS02 ZN ? GO:0003676 ... P03332 15751950
    62006 1wwe:A (-1.00) BS01 rna ? GO:0003676 ... P03332 15751950
    62007 1wwe:A (-1.00) BS02 ZN ? GO:0003676 ... P03332 15751950
    62008 1wwf:A (-1.00) BS01 rna ? GO:0003676 ... P03332 15751950
    62009 1wwf:A (-1.00) BS02 ZN ? GO:0003676 ... P03332 15751950
    62010 1wwg:A (-1.00) BS01 rna ? GO:0003676 ... P03332 15751950
    62011 1wwg:A (-1.00) BS02 ZN ? GO:0003676 ... P03332 15751950
    62012 1wwk:A (1.9) BS01 NAD 1.1.1.95 GO:0016616 ... O50095 N/A
    62013 1wwk:B (1.9) BS01 NAD 1.1.1.95 GO:0016616 ... O50095 N/A
    62014 1wwr:A (1.8) BS01 ZN 3.5.4.33 GO:0002100 ... O67050 15677468
    62015 1wwr:B (1.8) BS01 ZN 3.5.4.33 GO:0002100 ... O67050 15677468
    62016 1wwr:C (1.8) BS01 ZN 3.5.4.33 GO:0002100 ... O67050 15677468
    62017 1wwr:D (1.8) BS01 ZN 3.5.4.33 GO:0002100 ... O67050 15677468
    62018 1wwz:A (1.75) BS01 ACO ? GO:0016747 ... O59596 N/A
    62019 1wwz:B (1.75) BS01 ACO ? GO:0016747 ... O59596 N/A
    62020 1wx2:A (1.8) BS01 CU 1.14.18.1 GO:0016491 ... Q83WS2 16436386
    62021 1wx2:A (1.8) BS02 CU 1.14.18.1 GO:0016491 ... Q83WS2 16436386
    62022 1wx2:A (1.8) BS03 PER 1.14.18.1 GO:0016491 ... Q83WS2 16436386
    62023 1wx4:A (1.5) BS01 CU 1.14.18.1 GO:0016491 ... Q83WS2 16436386
    62024 1wx4:A (1.5) BS02 CU 1.14.18.1 GO:0016491 ... Q83WS2 16436386
    62025 1wx4:A (1.5) BS03 PER 1.14.18.1 GO:0016491 ... Q83WS2 16436386
    62026 1wxe:A (1.9) BS01 MG 6.3.1.5 GO:0000287 ... P18843 15699042
    62027 1wxe:A (1.9) BS02 AMP 6.3.1.5 GO:0000287 ... P18843 15699042
    62028 1wxe:A (1.9) BS03 AMP 6.3.1.5 GO:0000287 ... P18843 15699042
    62029 1wxg:A (1.9) BS01 MG 6.3.1.5 GO:0000287 ... P18843 15699042
    62030 1wxg:A (1.9) BS02 DND 6.3.1.5 GO:0000287 ... P18843 15699042
    62031 1wxh:A (1.9) BS01 NAD 6.3.1.5 GO:0000287 ... P18843 15699042
    62032 1wxi:A (1.7) BS01 MG 6.3.1.5 GO:0000287 ... P18843 15699042
    62033 1wxi:A (1.7) BS02 AMP 6.3.1.5 GO:0000287 ... P18843 15699042
    62034 1wxi:A (1.7) BS03 AMP 6.3.1.5 GO:0000287 ... P18843 15699042
    62035 1wxo:A (1.88) BS01 ZN ? GO:0000166 ... O58307 16087889
    62036 1wxo:B (1.88) BS01 ZN ? GO:0000166 ... O58307 16087889
    62037 1wxo:C (1.88) BS01 ZN ? GO:0000166 ... O58307 16087889
    62038 1wxy:A (2.5) BS01 ZN 3.5.4.4 GO:0004000 ... P56658 16060665
    62039 1wxy:A (2.5) BS02 FRK 3.5.4.4 GO:0004000 ... P56658 16060665
    62040 1wxz:A (2.8) BS01 ZN 3.5.4.4 GO:0004000 ... P56658 16033254
    62041 1wxz:A (2.8) BS02 FRL 3.5.4.4 GO:0004000 ... P56658 16033254
    62042 1wy2:A (1.7) BS01 ZN 3.4.13.9 GO:0005737 ... O58885 N/A
    62043 1wy2:A (1.7) BS02 ZN 3.4.13.9 GO:0005737 ... O58885 N/A
    62044 1wy2:B (1.7) BS01 ZN 3.4.13.9 GO:0005737 ... O58885 N/A
    62045 1wy2:B (1.7) BS02 ZN 3.4.13.9 GO:0005737 ... O58885 N/A
    62046 1wy7:A (2.2) BS01 SAH 2.1.1.- GO:0003676 ... O59611 16245322
    62047 1wy7:B (2.2) BS01 SAH 2.1.1.- GO:0003676 ... O59611 16245322
    62048 1wy7:C (2.2) BS01 SAH 2.1.1.- GO:0003676 ... O59611 16245322
    62049 1wy7:D (2.2) BS01 SAH 2.1.1.- GO:0003676 ... O59611 16245322
    62050 1wy9:A (2.1) BS01 CA ? GO:0001726 ... O70200 17011575
    62051 1wyg:A (2.6) BS01 CA 1.17.1.4
    1.17.3.2
    GO:0000255 ... P22985 15878860
    62052 1wyg:A (2.6) BS02 FES 1.17.1.4
    1.17.3.2
    GO:0000255 ... P22985 15878860
    62053 1wyg:A (2.6) BS03 FES 1.17.1.4
    1.17.3.2
    GO:0000255 ... P22985 15878860
    62054 1wyg:A (2.6) BS04 FAD 1.17.1.4
    1.17.3.2
    GO:0000255 ... P22985 15878860
    62055 1wyh:A (-1.00) BS01 ZN ? N/A Q13643 N/A
    62056 1wyh:A (-1.00) BS02 ZN ? N/A Q13643 N/A
    62057 1wys:A (-1.00) BS01 ZN ? GO:0008270 ... Q8BFR6 N/A
    62058 1wys:A (-1.00) BS02 ZN ? GO:0008270 ... Q8BFR6 N/A
    62059 1wyu:A (2.1) BS01 PLP 1.4.4.2 GO:0004375 ... Q5SKW8 15791207
    62060 1wyu:B (2.1) BS01 PLP 1.4.4.2 GO:0004375 ... Q5SKW7 15791207
    62061 1wyu:C (2.1) BS01 PLP 1.4.4.2 GO:0004375 ... Q5SKW8 15791207
    62062 1wyu:D (2.1) BS01 PLP 1.4.4.2 GO:0004375 ... Q5SKW7 15791207
    62063 1wyu:E (2.1) BS01 PLP 1.4.4.2 GO:0004375 ... Q5SKW8 15791207
    62064 1wyu:F (2.1) BS01 PLP 1.4.4.2 GO:0004375 ... Q5SKW7 15791207
    62065 1wyu:G (2.1) BS01 PLP 1.4.4.2 GO:0004375 ... Q5SKW8 15791207
    62066 1wyu:H (2.1) BS01 PLP 1.4.4.2 GO:0004375 ... Q5SKW7 15791207
    62067 1wyv:A (2.4) BS01 PLP 1.4.4.2 GO:0004375 ... Q5SKW8 15791207
    62068 1wyv:A (2.4) BS02 AOA 1.4.4.2 GO:0004375 ... Q5SKW8 15791207
    62069 1wyv:B (2.4) BS01 PLP 1.4.4.2 GO:0004375 ... Q5SKW7 15791207
    62070 1wyv:C (2.4) BS01 PLP 1.4.4.2 GO:0004375 ... Q5SKW8 15791207
    62071 1wyv:C (2.4) BS02 AOA 1.4.4.2 GO:0004375 ... Q5SKW8 15791207
    62072 1wyv:D (2.4) BS01 PLP 1.4.4.2 GO:0004375 ... Q5SKW7 15791207
    62073 1wyv:E (2.4) BS01 PLP 1.4.4.2 GO:0004375 ... Q5SKW8 15791207
    62074 1wyv:E (2.4) BS02 AOA 1.4.4.2 GO:0004375 ... Q5SKW8 15791207
    62075 1wyv:F (2.4) BS01 PLP 1.4.4.2 GO:0004375 ... Q5SKW7 15791207
    62076 1wyv:G (2.4) BS01 PLP 1.4.4.2 GO:0004375 ... Q5SKW8 15791207
    62077 1wyv:G (2.4) BS02 AOA 1.4.4.2 GO:0004375 ... Q5SKW8 15791207
    62078 1wyv:H (2.4) BS01 PLP 1.4.4.2 GO:0004375 ... Q5SKW7 15791207
    62079 1wyw:A (2.1) BS01 MG 3.2.2.29 GO:0000700 ... Q13569 15959518
    62080 1wyw:A (2.1) BS02 MG 3.2.2.29 GO:0000700 ... Q13569 15959518
    62081 1wz1:H (1.85) BS01 DNS N/A N/A N/A 16019026
    62082 1wz2:A (3.21) BS01 rna 6.1.1.4 GO:0000166 ... O58698 N/A
    62083 1wz2:B (3.21) BS01 rna 6.1.1.4 GO:0000166 ... O58698 N/A
    62084 1wza:A (1.6) BS01 CA 3.2.1.1 GO:0004556 ... Q8GPL8 16647060
    62085 1wza:A (1.6) BS02 CA 3.2.1.1 GO:0004556 ... Q8GPL8 16647060
    62086 1wzb:A (1.5) BS01 peptide ? N/A Q80BK4 16313184
    62087 1wzb:A (1.5) BS02 peptide ? N/A Q80BK4 16313184
    62088 1wzc:A (1.9) BS01 MG 3.1.3.70 GO:0000287 ... O58690 19018103
    62089 1wzc:A (1.9) BS02 PO4 3.1.3.70 GO:0000287 ... O58690 19018103
    62090 1wzc:B (1.9) BS01 MG 3.1.3.70 GO:0000287 ... O58690 19018103
    62091 1wzc:B (1.9) BS02 PO4 3.1.3.70 GO:0000287 ... O58690 19018103
    62092 1wzd:A (1.35) BS01 YOK 1.14.14.18 GO:0004392 ... P71119 16769893
    62093 1wzd:B (1.35) BS01 YOK 1.14.14.18 GO:0004392 ... P71119 16769893
    62094 1wze:A (2.0) BS01 NAD 1.1.1.37 GO:0003824 ... P10584 N/A
    62095 1wze:B (2.0) BS01 NAD 1.1.1.37 GO:0003824 ... P10584 N/A
    62096 1wzf:A (1.85) BS01 YOL 1.14.14.18 GO:0004392 ... P71119 16769893
    62097 1wzf:B (1.85) BS01 YOL 1.14.14.18 GO:0004392 ... P71119 16769893
    62098 1wzg:A (1.75) BS01 YOM 1.14.14.18 GO:0004392 ... P71119 16769893
    62099 1wzg:B (1.75) BS01 YOM 1.14.14.18 GO:0004392 ... P71119 16769893
    62100 1wzi:A (2.0) BS01 NDP 1.1.1.37 GO:0003824 ... P10584 N/A
    62101 1wzi:B (2.0) BS01 NDP 1.1.1.37 GO:0003824 ... P10584 N/A
    62102 1wzk:A (2.3) BS01 CA 3.2.1.135 GO:0004553 ... Q08751 N/A
    62103 1wzk:B (2.3) BS01 CA 3.2.1.135 GO:0004553 ... Q08751 N/A
    62104 1wzl:A (2.0) BS01 CA 3.2.1.135 GO:0004553 ... Q08751 N/A
    62105 1wzl:B (2.0) BS01 CA 3.2.1.135 GO:0004553 ... Q08751 N/A
    62106 1wzm:A (3.2) BS01 CA 3.2.1.135 GO:0004553 ... Q08751 N/A
    62107 1wzm:B (3.2) BS01 CA 3.2.1.135 GO:0004553 ... Q08751 N/A
    62108 1wzn:A (1.9) BS01 SAH 2.1.1.- N/A O59000 N/A
    62109 1wzn:B (1.9) BS01 SAH 2.1.1.- N/A O59000 N/A
    62110 1wzn:C (1.9) BS01 SAH 2.1.1.- N/A O59000 N/A
    62111 1wzy:A (2.5) BS01 F29 2.7.11.24 GO:0000165 ... P28482 16242327 MOAD: ic50=0.56uM
    BindingDB: IC50=560nM
    62112 1x01:A (2.0) BS01 ATP 6.3.4.15 GO:0004077 ... O57883 18372281
    62113 1x01:B (2.0) BS01 ATP 6.3.4.15 GO:0004077 ... O57883 18372281
    62114 1x02:A (-1.00) BS01 CA ? GO:0005102 ... P0DP33 16511487
    62115 1x02:A (-1.00) BS02 CA ? GO:0005102 ... P0DP33 16511487
    62116 1x02:A (-1.00) BS03 CA ? GO:0005102 ... P0DP33 16511487
    62117 1x02:A (-1.00) BS04 CA ? GO:0005102 ... P0DP33 16511487
    62118 1x06:A (1.9) BS01 PO4 2.5.1.31 GO:0000287 ... P60472 15788389
    62119 1x06:A (1.9) BS02 FPS 2.5.1.31 GO:0000287 ... P60472 15788389
    62120 1x06:A (1.9) BS03 FPS 2.5.1.31 GO:0000287 ... P60472 15788389
    62121 1x07:A (2.2) BS01 PO4 2.5.1.31 GO:0000287 ... P60472 15788389
    62122 1x07:A (2.2) BS02 IPE 2.5.1.31 GO:0000287 ... P60472 15788389 MOAD: Kd=520uM
    62123 1x08:A (1.9) BS01 FPS 2.5.1.31 GO:0000287 ... P60472 15788389
    62124 1x08:A (1.9) BS02 FPS 2.5.1.31 GO:0000287 ... P60472 15788389
    62125 1x09:A (1.87) BS01 IPE 2.5.1.31 GO:0000287 ... P60472 15788389 MOAD: Kd=520uM
    62126 1x09:A (1.87) BS02 IPE 2.5.1.31 GO:0000287 ... P60472 15788389 MOAD: Kd=520uM
    62127 1x0f:A (-1.00) BS01 dna ? GO:0003676 ... Q14103 15734733
    62128 1x0g:A (2.5) BS01 FES ? GO:0005737 ... Q8DLM0 16730357
    62129 1x0g:B (2.5) BS01 FES ? GO:0005737 ... Q8DLM0 16730357
    62130 1x0g:C (2.5) BS01 FES ? GO:0005737 ... Q8DLM0 16730357
    62131 1x0i:1 (2.3) BS01 SO4 ? GO:0005216 ... P02945 16023672
    62132 1x0i:1 (2.3) BS02 RET ? GO:0005216 ... P02945 16023672
    62133 1x0k:1 (2.6) BS01 RET ? GO:0005216 ... P02945 16023672
    62134 1x0n:A (-1.00) BS01 DTF ? N/A P62993 N/A BindingDB: IC50=20nM
    62135 1x0p:A (2.0) BS01 FAD ? GO:0009785 ... Q8DMN3 15876364
    62136 1x0p:B (2.0) BS01 FAD ? GO:0009785 ... Q8DMN3 15876364
    62137 1x0p:C (2.0) BS01 FAD ? GO:0009785 ... Q8DMN3 15876364
    62138 1x0p:D (2.0) BS01 FAD ? GO:0009785 ... Q8DMN3 15876364
    62139 1x0p:E (2.0) BS01 FAD ? GO:0009785 ... Q8DMN3 15876364
    62140 1x0p:F (2.0) BS01 FAD ? GO:0009785 ... Q8DMN3 15876364
    62141 1x0p:G (2.0) BS01 FAD ? GO:0009785 ... Q8DMN3 15876364
    62142 1x0p:H (2.0) BS01 FAD ? GO:0009785 ... Q8DMN3 15876364
    62143 1x0p:I (2.0) BS01 FAD ? GO:0009785 ... Q8DMN3 15876364
    62144 1x0p:J (2.0) BS01 FAD ? GO:0009785 ... Q8DMN3 15876364
    62145 1x0s:A (2.5) BS01 RET ? GO:0005216 ... P02945 16084526
    62146 1x0t:A (1.6) BS01 ZN 3.1.26.5 GO:0001682 ... O59248 16142906
    62147 1x0v:A (2.3) BS01 SO4 1.1.1.8 GO:0005515 ... P21695 16460752
    62148 1x0v:A (2.3) BS02 SO4 1.1.1.8 GO:0005515 ... P21695 16460752
    62149 1x0v:A (2.3) BS03 SO4 1.1.1.8 GO:0005515 ... P21695 16460752
    62150 1x0v:A (2.3) BS04 SO4 1.1.1.8 GO:0005515 ... P21695 16460752
    62151 1x0v:A (2.3) BS05 SO4 1.1.1.8 GO:0005515 ... P21695 16460752
    62152 1x0v:B (2.3) BS01 SO4 1.1.1.8 GO:0005515 ... P21695 16460752
    62153 1x0v:B (2.3) BS02 SO4 1.1.1.8 GO:0005515 ... P21695 16460752
    62154 1x0v:B (2.3) BS03 SO4 1.1.1.8 GO:0005515 ... P21695 16460752
    62155 1x0x:A (2.75) BS01 SO4 1.1.1.8 GO:0005515 ... P21695 16460752
    62156 1x0x:A (2.75) BS02 SO4 1.1.1.8 GO:0005515 ... P21695 16460752
    62157 1x0x:A (2.75) BS03 SO4 1.1.1.8 GO:0005515 ... P21695 16460752
    62158 1x0x:A (2.75) BS04 NAD 1.1.1.8 GO:0005515 ... P21695 16460752
    62159 1x11:A (2.5) BS01 peptide ? N/A Q02410 9321393
    62160 1x11:B (2.5) BS01 peptide ? N/A Q02410 9321393
    62161 1x11:B (2.5) BS02 peptide ? N/A Q02410 9321393
    62162 1x14:B (1.94) BS01 NAD 7.1.1.1 GO:0016491 ... P07001 16083909
    62163 1x15:B (2.04) BS01 NAD 7.1.1.1 GO:0016491 ... P07001 16083909
    62164 1x1a:A (2.6) BS01 SAM 2.1.1.333 GO:0003824 ... Q8KGE0 16797589
    62165 1x1b:A (2.6) BS01 SAH 2.1.1.333 GO:0003824 ... Q8KGE0 16797589
    62166 1x1c:A (2.85) BS01 ZN 2.1.1.333 GO:0003824 ... Q8KGE0 16797589
    62167 1x1c:A (2.85) BS02 SAH 2.1.1.333 GO:0003824 ... Q8KGE0 16797589
    62168 1x1d:A (2.7) BS01 SAH 2.1.1.333 GO:0003824 ... Q8KGE0 16797589
    62169 1x1i:A (1.8) BS01 46M 4.2.2.12 GO:0005576 ... Q9AQS0 15979090
    62170 1x1j:A (2.1) BS01 46D 4.2.2.12 GO:0005576 ... Q9AQS0 15979090
    62171 1x1j:A (2.1) BS02 CA 4.2.2.12 GO:0005576 ... Q9AQS0 15979090
    62172 1x1r:A (1.3) BS01 GDP 3.6.5.2 GO:0003924 ... O08989 15994326
    62173 1x1s:A (2.2) BS01 GNP 3.6.5.2 GO:0003924 ... O08989 15994326
    62174 1x1t:A (1.52) BS01 CAC 1.1.1.30 GO:0003858 ... Q5KST5 16325199
    62175 1x1t:A (1.52) BS02 NAD 1.1.1.30 GO:0003858 ... Q5KST5 16325199
    62176 1x1v:A (2.45) BS01 MMA ? GO:0030246 ... Q8L5H4 15958419
    62177 1x1v:A (2.45) BS02 MMA ? GO:0030246 ... Q8L5H4 15958419
    62178 1x1v:A (2.45) BS03 MMA ? GO:0030246 ... Q8L5H4 15958419
    62179 1x1v:A (2.45) BS04 ZN ? GO:0030246 ... Q8L5H4 15958419
    62180 1x1v:B (2.45) BS01 MMA ? GO:0030246 ... Q8L5H4 15958419
    62181 1x1v:B (2.45) BS02 MMA ? GO:0030246 ... Q8L5H4 15958419
    62182 1x1v:B (2.45) BS03 ZN ? GO:0030246 ... Q8L5H4 15958419
    62183 1x1z:A (1.45) BS01 BMP 4.1.1.23 GO:0004590 ... O26232 16248642 MOAD: Ki=8.8pM
    62184 1x1z:A (1.45) BS02 BMP 4.1.1.23 GO:0004590 ... O26232 16248642 MOAD: Ki=8.8pM
    62185 1x1z:B (1.45) BS01 BMP 4.1.1.23 GO:0004590 ... O26232 16248642
    62186 1x1z:B (1.45) BS02 BMP 4.1.1.23 GO:0004590 ... O26232 16248642
    62187 1x27:A (2.7) BS01 peptide 2.7.10.2 N/A P06239 16245368
    62188 1x27:A (2.7) BS02 peptide 2.7.10.2 N/A P06239 16245368
    62189 1x27:B (2.7) BS01 peptide 2.7.10.2 N/A P06239 16245368
    62190 1x27:C (2.7) BS01 peptide 2.7.10.2 N/A P06239 16245368
    62191 1x27:D (2.7) BS01 peptide 2.7.10.2 N/A P06239 16245368
    62192 1x27:E (2.7) BS01 peptide 2.7.10.2 N/A P06239 16245368
    62193 1x27:F (2.7) BS01 peptide 2.7.10.2 N/A P06239 16245368
    62194 1x28:A (2.4) BS01 PGU 2.6.1.1 GO:0003824 ... P00509 15938611
    62195 1x28:A (2.4) BS02 PGU 2.6.1.1 GO:0003824 ... P00509 15938611
    62196 1x28:B (2.4) BS01 PGU 2.6.1.1 GO:0003824 ... P00509 15938611
    62197 1x28:B (2.4) BS02 PGU 2.6.1.1 GO:0003824 ... P00509 15938611
    62198 1x29:A (2.2) BS01 PMG 2.6.1.1 GO:0003824 ... P00509 15938611
    62199 1x29:A (2.2) BS02 PMG 2.6.1.1 GO:0003824 ... P00509 15938611
    62200 1x29:B (2.2) BS01 PMG 2.6.1.1 GO:0003824 ... P00509 15938611

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).