SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    62601 1xbr:B (2.5) BS01 dna ? GO:0000978 ... P24781 9349824
    62602 1xbr:B (2.5) BS02 dna ? GO:0000978 ... P24781 9349824
    62603 1xbt:A (2.4) BS01 ZN 2.7.1.21 GO:0004797 ... P04183 15611477
    62604 1xbt:A (2.4) BS02 TTP 2.7.1.21 GO:0004797 ... P04183 15611477
    62605 1xbt:B (2.4) BS01 ZN 2.7.1.21 GO:0004797 ... P04183 15611477
    62606 1xbt:B (2.4) BS02 TTP 2.7.1.21 GO:0004797 ... P04183 15611477
    62607 1xbt:C (2.4) BS01 ZN 2.7.1.21 GO:0004797 ... P04183 15611477
    62608 1xbt:C (2.4) BS02 TTP 2.7.1.21 GO:0004797 ... P04183 15611477
    62609 1xbt:D (2.4) BS01 ZN 2.7.1.21 GO:0004797 ... P04183 15611477
    62610 1xbt:D (2.4) BS02 TTP 2.7.1.21 GO:0004797 ... P04183 15611477
    62611 1xbt:E (2.4) BS01 ZN 2.7.1.21 GO:0004797 ... P04183 15611477
    62612 1xbt:E (2.4) BS02 TTP 2.7.1.21 GO:0004797 ... P04183 15611477
    62613 1xbt:F (2.4) BS01 ZN 2.7.1.21 GO:0004797 ... P04183 15611477
    62614 1xbt:F (2.4) BS02 TTP 2.7.1.21 GO:0004797 ... P04183 15611477
    62615 1xbt:G (2.4) BS01 ZN 2.7.1.21 GO:0004797 ... P04183 15611477
    62616 1xbt:G (2.4) BS02 TTP 2.7.1.21 GO:0004797 ... P04183 15611477
    62617 1xbt:H (2.4) BS01 ZN 2.7.1.21 GO:0004797 ... P04183 15611477
    62618 1xbt:H (2.4) BS02 TTP 2.7.1.21 GO:0004797 ... P04183 15611477
    62619 1xbu:A (1.2) BS01 ZN 3.4.11.24 GO:0004177 ... P80561 N/A
    62620 1xbu:A (1.2) BS02 ZN 3.4.11.24 GO:0004177 ... P80561 N/A
    62621 1xbu:A (1.2) BS03 CA 3.4.11.24 GO:0004177 ... P80561 N/A
    62622 1xbu:A (1.2) BS04 IOY 3.4.11.24 GO:0004177 ... P80561 N/A
    62623 1xbv:A (1.66) BS01 5RP 4.1.1.85 GO:0000287 ... P39304 15697207
    62624 1xbv:A (1.66) BS02 MG 4.1.1.85 GO:0000287 ... P39304 15697207
    62625 1xbv:B (1.66) BS01 5RP 4.1.1.85 GO:0000287 ... P39304 15697207
    62626 1xbv:B (1.66) BS02 MG 4.1.1.85 GO:0000287 ... P39304 15697207
    62627 1xbx:A (1.81) BS01 HMS 4.1.1.85 GO:0000287 ... P39304 15697207
    62628 1xbx:A (1.81) BS02 MG 4.1.1.85 GO:0000287 ... P39304 15697207
    62629 1xbx:B (1.81) BS01 5RP 4.1.1.85 GO:0000287 ... P39304 15697207
    62630 1xbx:B (1.81) BS02 MG 4.1.1.85 GO:0000287 ... P39304 15697207
    62631 1xby:A (1.58) BS01 5RP 4.1.1.85 GO:0000287 ... P39304 15697207
    62632 1xby:A (1.58) BS02 MG 4.1.1.85 GO:0000287 ... P39304 15697207
    62633 1xby:B (1.58) BS01 5RP 4.1.1.85 GO:0000287 ... P39304 15697207
    62634 1xby:B (1.58) BS02 MG 4.1.1.85 GO:0000287 ... P39304 15697207
    62635 1xbz:A (1.8) BS01 MG 4.1.1.85 GO:0000287 ... P39304 15697207
    62636 1xbz:A (1.8) BS02 MG 4.1.1.85 GO:0000287 ... P39304 15697207
    62637 1xbz:A (1.8) BS03 LX1 4.1.1.85 GO:0000287 ... P39304 15697207
    62638 1xbz:B (1.8) BS01 LX1 4.1.1.85 GO:0000287 ... P39304 15697207
    62639 1xc1:A (1.51) BS01 ZRC ? GO:0055085 ... P17259 15472987
    62640 1xc1:B (1.51) BS01 ZRC ? GO:0055085 ... P17259 15472987
    62641 1xc1:C (1.51) BS01 ZRC ? GO:0055085 ... P17259 15472987
    62642 1xc1:D (1.51) BS01 ZRC ? GO:0055085 ... P17259 15472987
    62643 1xc1:E (1.51) BS01 ZRC ? GO:0055085 ... P17259 15472987
    62644 1xc1:F (1.51) BS01 ZRC ? GO:0055085 ... P17259 15472987
    62645 1xc1:G (1.51) BS01 ZRC ? GO:0055085 ... P17259 15472987
    62646 1xc1:H (1.51) BS01 ZRC ? GO:0055085 ... P17259 15472987
    62647 1xc1:I (1.51) BS01 ZRC ? GO:0055085 ... P17259 15472987
    62648 1xc3:A (2.1) BS01 ZN 2.7.1.4 GO:0008865 ... O05510 21185308
    62649 1xc4:A (2.8) BS01 SO4 4.2.1.20 GO:0000162 ... P0A877 15451433
    62650 1xc4:A (2.8) BS02 GOL 4.2.1.20 GO:0000162 ... P0A877 15451433
    62651 1xc4:B (2.8) BS01 SO4 4.2.1.20 GO:0000162 ... P0A877 15451433
    62652 1xc4:B (2.8) BS02 GOL 4.2.1.20 GO:0000162 ... P0A877 15451433
    62653 1xc6:A (2.1) BS01 MAN 3.2.1.23 GO:0004553 ... Q700S9 15491613
    62654 1xc6:A (2.1) BS02 MAN 3.2.1.23 GO:0004553 ... Q700S9 15491613
    62655 1xc6:A (2.1) BS03 MAN 3.2.1.23 GO:0004553 ... Q700S9 15491613
    62656 1xc6:A (2.1) BS04 GAL 3.2.1.23 GO:0004553 ... Q700S9 15491613
    62657 1xc7:A (1.83) BS01 GL6 2.4.1.1 GO:0004645 ... P00489 15653344 MOAD: Ki=5.1mM
    BindingDB: Ki=5900000nM
    62658 1xc7:A (1.83) BS02 PLP 2.4.1.1 GO:0004645 ... P00489 15653344
    62659 1xc8:A (1.95) BS01 dna 3.2.2.23
    4.2.99.18
    GO:0003676 ... P42371 15249553
    62660 1xc8:A (1.95) BS02 dna 3.2.2.23
    4.2.99.18
    GO:0003676 ... P42371 15249553
    62661 1xc8:A (1.95) BS03 ZN 3.2.2.23
    4.2.99.18
    GO:0003676 ... P42371 15249553
    62662 1xc9:A (1.9) BS01 dna 2.7.7.7 GO:0003676 ... P52026 15548515
    62663 1xc9:A (1.9) BS02 dna 2.7.7.7 GO:0003676 ... P52026 15548515
    62664 1xc9:A (1.9) BS03 GLC 2.7.7.7 GO:0003676 ... P52026 15548515
    62665 1xc9:A (1.9) BS04 FRU 2.7.7.7 GO:0003676 ... P52026 15548515
    62666 1xc9:A (1.9) BS05 BAP 2.7.7.7 GO:0003676 ... P52026 15548515
    62667 1xcb:A (2.9) BS01 NAD ? GO:0003677 ... Q9X2V5 15642260
    62668 1xcb:A (2.9) BS02 NAD ? GO:0003677 ... Q9X2V5 15642260
    62669 1xcb:B (2.9) BS01 NAD ? GO:0003677 ... Q9X2V5 15642260
    62670 1xcb:B (2.9) BS02 NAD ? GO:0003677 ... Q9X2V5 15642260
    62671 1xcb:C (2.9) BS01 NAD ? GO:0003677 ... Q9X2V5 15642260
    62672 1xcb:C (2.9) BS02 NAD ? GO:0003677 ... Q9X2V5 15642260
    62673 1xcb:D (2.9) BS01 NAD ? GO:0003677 ... Q9X2V5 15642260
    62674 1xcb:D (2.9) BS02 CA ? GO:0003677 ... Q9X2V5 15642260
    62675 1xcb:D (2.9) BS03 NAD ? GO:0003677 ... Q9X2V5 15642260
    62676 1xcb:E (2.9) BS01 NAD ? GO:0003677 ... Q9X2V5 15642260
    62677 1xcb:F (2.9) BS01 NAD ? GO:0003677 ... Q9X2V5 15642260
    62678 1xcb:F (2.9) BS02 NAD ? GO:0003677 ... Q9X2V5 15642260
    62679 1xcb:G (2.9) BS01 NAD ? GO:0003677 ... Q9X2V5 15642260
    62680 1xch:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0003009 ... P68082 9300804
    62681 1xcj:A (2.0) BS01 SAH 2.1.1.2 GO:0005634 ... P10868 15533043
    62682 1xcj:A (2.0) BS02 NMG 2.1.1.2 GO:0005634 ... P10868 15533043
    62683 1xcl:A (2.0) BS01 SAH 2.1.1.2 GO:0005634 ... P10868 15533043
    62684 1xcl:A (2.0) BS02 GAI 2.1.1.2 GO:0005634 ... P10868 15533043
    62685 1xcm:A (1.84) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 N/A
    62686 1xco:A (2.85) BS01 UVW 2.3.1.8 GO:0005737 ... P39646 16283428
    62687 1xco:A (2.85) BS02 UVW 2.3.1.8 GO:0005737 ... P39646 16283428
    62688 1xco:A (2.85) BS03 UVW 2.3.1.8 GO:0005737 ... P39646 16283428
    62689 1xco:A (2.85) BS04 UVW 2.3.1.8 GO:0005737 ... P39646 16283428
    62690 1xco:B (2.85) BS01 UVW 2.3.1.8 GO:0005737 ... P39646 16283428
    62691 1xco:B (2.85) BS02 UVW 2.3.1.8 GO:0005737 ... P39646 16283428
    62692 1xco:B (2.85) BS03 UVW 2.3.1.8 GO:0005737 ... P39646 16283428
    62693 1xco:B (2.85) BS04 UVW 2.3.1.8 GO:0005737 ... P39646 16283428
    62694 1xco:B (2.85) BS05 UVW 2.3.1.8 GO:0005737 ... P39646 16283428
    62695 1xco:C (2.85) BS01 UVW 2.3.1.8 GO:0005737 ... P39646 16283428
    62696 1xco:C (2.85) BS02 UVW 2.3.1.8 GO:0005737 ... P39646 16283428
    62697 1xco:C (2.85) BS03 UVW 2.3.1.8 GO:0005737 ... P39646 16283428
    62698 1xco:C (2.85) BS04 UVW 2.3.1.8 GO:0005737 ... P39646 16283428
    62699 1xco:D (2.85) BS01 UVW 2.3.1.8 GO:0005737 ... P39646 16283428
    62700 1xco:D (2.85) BS02 UVW 2.3.1.8 GO:0005737 ... P39646 16283428
    62701 1xco:D (2.85) BS03 UVW 2.3.1.8 GO:0005737 ... P39646 16283428
    62702 1xco:D (2.85) BS04 UVW 2.3.1.8 GO:0005737 ... P39646 16283428
    62703 1xco:E (2.85) BS01 UVW 2.3.1.8 GO:0005737 ... P39646 16283428
    62704 1xco:E (2.85) BS02 UVW 2.3.1.8 GO:0005737 ... P39646 16283428
    62705 1xco:E (2.85) BS03 UVW 2.3.1.8 GO:0005737 ... P39646 16283428
    62706 1xco:F (2.85) BS01 UVW 2.3.1.8 GO:0005737 ... P39646 16283428
    62707 1xco:F (2.85) BS02 UVW 2.3.1.8 GO:0005737 ... P39646 16283428
    62708 1xco:F (2.85) BS03 UVW 2.3.1.8 GO:0005737 ... P39646 16283428
    62709 1xcp:A (3.2) BS01 MG 1.18.6.1 GO:0005524 ... P00459 15650336
    62710 1xcp:A (3.2) BS02 ADP 1.18.6.1 GO:0005524 ... P00459 15650336
    62711 1xcp:A (3.2) BS03 SF4 1.18.6.1 GO:0005524 ... P00459 15650336
    62712 1xcp:B (3.2) BS01 MG 1.18.6.1 GO:0005524 ... P00459 15650336
    62713 1xcp:B (3.2) BS02 SF4 1.18.6.1 GO:0005524 ... P00459 15650336
    62714 1xcp:B (3.2) BS03 ADP 1.18.6.1 GO:0005524 ... P00459 15650336
    62715 1xcp:C (3.2) BS01 MG 1.18.6.1 GO:0005524 ... P00459 15650336
    62716 1xcp:C (3.2) BS02 SF4 1.18.6.1 GO:0005524 ... P00459 15650336
    62717 1xcp:C (3.2) BS03 ADP 1.18.6.1 GO:0005524 ... P00459 15650336
    62718 1xcp:D (3.2) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 15650336
    62719 1xcp:D (3.2) BS02 MG 1.18.6.1 GO:0005524 ... P00459 15650336
    62720 1xcp:D (3.2) BS03 ADP 1.18.6.1 GO:0005524 ... P00459 15650336
    62721 1xcq:B (3.5) BS01 peptide N/A N/A N/A 15930632
    62722 1xcq:E (3.5) BS01 peptide N/A N/A N/A 15930632
    62723 1xcq:F (3.5) BS01 peptide N/A N/A N/A 15930632
    62724 1xcr:A (1.7) BS01 ZN 3.1.-.- GO:0005515 ... Q9H0W9 16522806
    62725 1xcr:B (1.7) BS01 ZN 3.1.-.- GO:0005515 ... Q9H0W9 16522806
    62726 1xct:C (3.05) BS01 peptide N/A N/A N/A 15930632
    62727 1xct:D (3.05) BS01 peptide N/A N/A N/A 15930632
    62728 1xcw:A (2.0) BS01 GLC 3.2.1.1 GO:0003824 ... P04746 15736945
    62729 1xcw:A (2.0) BS02 AC1 3.2.1.1 GO:0003824 ... P04746 15736945
    62730 1xcw:A (2.0) BS03 CA 3.2.1.1 GO:0003824 ... P04746 15736945
    62731 1xcx:A (1.9) BS01 GLC 3.2.1.1 GO:0003824 ... P04746 15736945
    62732 1xcx:A (1.9) BS02 AC1 3.2.1.1 GO:0003824 ... P04746 15736945
    62733 1xcx:A (1.9) BS03 CA 3.2.1.1 GO:0003824 ... P04746 15736945
    62734 1xd0:A (2.0) BS01 ARE 3.2.1.1 GO:0003824 ... P04746 15736945 MOAD: Ki=0.075uM
    62735 1xd0:A (2.0) BS02 CA 3.2.1.1 GO:0003824 ... P04746 15736945
    62736 1xd1:A (2.2) BS01 6SA 3.2.1.1 GO:0003824 ... P04746 15736945 MOAD: Ki=0.012uM
    BindingDB: Ki=12nM
    62737 1xd1:A (2.2) BS02 CA 3.2.1.1 GO:0003824 ... P04746 15736945
    62738 1xd2:A (2.7) BS01 MG 3.6.5.2 GO:0003924 ... P01112 15507210
    62739 1xd2:A (2.7) BS02 GDP 3.6.5.2 GO:0003924 ... P01112 15507210
    62740 1xd3:A (1.45) BS01 MG 3.4.19.12 GO:0004843 ... P15374 15531586
    62741 1xd3:A (1.45) BS02 MG 3.4.19.12 GO:0004843 ... P15374 15531586
    62742 1xd3:A (1.45) BS03 GVE 3.4.19.12 GO:0004843 ... P15374 15531586
    62743 1xd3:C (1.45) BS01 MG 3.4.19.12 GO:0004843 ... P15374 15531586
    62744 1xd3:C (1.45) BS02 MG 3.4.19.12 GO:0004843 ... P15374 15531586
    62745 1xd3:C (1.45) BS03 GVE 3.4.19.12 GO:0004843 ... P15374 15531586
    62746 1xd8:A (2.7) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 15549494
    62747 1xd8:B (2.7) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 15549494
    62748 1xd9:A (2.8) BS01 MG 1.18.6.1 GO:0005524 ... P00459 15549494
    62749 1xd9:A (2.8) BS02 SF4 1.18.6.1 GO:0005524 ... P00459 15549494
    62750 1xd9:A (2.8) BS03 ADP 1.18.6.1 GO:0005524 ... P00459 15549494
    62751 1xd9:B (2.8) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 15549494
    62752 1xd9:B (2.8) BS02 MG 1.18.6.1 GO:0005524 ... P00459 15549494
    62753 1xd9:B (2.8) BS03 ADP 1.18.6.1 GO:0005524 ... P00459 15549494
    62754 1xdb:A (2.8) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 15549494
    62755 1xdb:B (2.8) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 15549494
    62756 1xdc:A (1.85) BS01 MN 1.15.1.1 GO:0004784 ... P04179 16150974
    62757 1xdc:B (1.85) BS01 MN 1.15.1.1 GO:0004784 ... P04179 16150974
    62758 1xdd:A (2.2) BS01 MG ? N/A P20701 15304496
    62759 1xdd:A (2.2) BS02 AAY ? N/A P20701 15304496 MOAD: ic50=0.2uM
    62760 1xdd:A (2.2) BS03 AAY ? N/A P20701 15304496 MOAD: ic50=0.2uM
    62761 1xdd:B (2.2) BS01 AAY ? N/A P20701 15304496 MOAD: ic50=0.2uM
    62762 1xdd:B (2.2) BS02 MG ? N/A P20701 15304496
    62763 1xdd:B (2.2) BS03 AAY ? N/A P20701 15304496 MOAD: ic50=0.2uM
    62764 1xdg:A (2.1) BS01 MG ? N/A P20701 15304496
    62765 1xdg:A (2.1) BS02 AB8 ? N/A P20701 15304496 MOAD: ic50=0.05uM
    BindingDB: IC50=50nM
    62766 1xdg:A (2.1) BS03 AB8 ? N/A P20701 15304496 MOAD: ic50=0.05uM
    BindingDB: IC50=50nM
    62767 1xdg:B (2.1) BS01 AB8 ? N/A P20701 15304496 MOAD: ic50=0.05uM
    BindingDB: IC50=50nM
    62768 1xdg:B (2.1) BS02 MG ? N/A P20701 15304496
    62769 1xdg:B (2.1) BS03 AB8 ? N/A P20701 15304496 MOAD: ic50=0.05uM
    BindingDB: IC50=50nM
    62770 1xdh:A (1.7) BS01 peptide 3.4.23.39 GO:0004190 ... P46925 N/A
    62771 1xdh:B (1.7) BS01 peptide 3.4.23.39 GO:0004190 ... P46925 N/A
    62772 1xdi:A (2.81) BS01 FAD 1.6.5.2 GO:0003955 ... P9WHH7 15456792
    62773 1xdi:B (2.81) BS01 FAD 1.6.5.2 GO:0003955 ... P9WHH7 15456792
    62774 1xdj:A (2.2) BS01 ZN 2.1.1.14 GO:0003871 ... Q9X112 15630480
    62775 1xdj:A (2.2) BS02 MRY 2.1.1.14 GO:0003871 ... Q9X112 15630480
    62776 1xdj:B (2.2) BS01 ZN 2.1.1.14 GO:0003871 ... Q9X112 15630480
    62777 1xdj:B (2.2) BS02 MRY 2.1.1.14 GO:0003871 ... Q9X112 15630480
    62778 1xdk:A (2.9) BS01 peptide ? GO:0003677 ... P28700 15528208
    62779 1xdk:A (2.9) BS02 9CR ? GO:0003677 ... P28700 15528208 BindingDB: IC50=82nM, Kd=32nM, EC50=200nM
    62780 1xdk:B (2.9) BS01 peptide ? GO:0003677 ... P22605 15528208
    62781 1xdk:B (2.9) BS02 9CR ? GO:0003677 ... P22605 15528208 BindingDB: Kd=7nM
    62782 1xdk:E (2.9) BS01 peptide ? GO:0003677 ... P28700 15528208
    62783 1xdk:E (2.9) BS02 9CR ? GO:0003677 ... P28700 15528208 BindingDB: IC50=82nM, Kd=32nM, EC50=200nM
    62784 1xdk:F (2.9) BS01 peptide ? GO:0003677 ... P22605 15528208
    62785 1xdk:F (2.9) BS02 9CR ? GO:0003677 ... P22605 15528208 BindingDB: Kd=7nM
    62786 1xdn:A (1.2) BS01 ATP 6.5.1.3 GO:0003972 ... P86927 15465048
    62787 1xdp:A (2.5) BS01 MG 2.7.4.1 GO:0003824 ... P0A7B1 15947782
    62788 1xdp:A (2.5) BS02 MG 2.7.4.1 GO:0003824 ... P0A7B1 15947782
    62789 1xdp:A (2.5) BS03 ATP 2.7.4.1 GO:0003824 ... P0A7B1 15947782
    62790 1xdp:B (2.5) BS01 ATP 2.7.4.1 GO:0003824 ... P0A7B1 15947782
    62791 1xdq:A (2.55) BS01 O 1.8.5.- GO:0016491 ... P76342 15355966
    62792 1xdq:B (2.55) BS01 MO 1.8.5.- GO:0016491 ... P76342 15355966
    62793 1xdq:B (2.55) BS02 O 1.8.5.- GO:0016491 ... P76342 15355966
    62794 1xdq:C (2.55) BS01 O 1.8.5.- GO:0016491 ... P76342 15355966
    62795 1xdq:D (2.55) BS01 O 1.8.5.- GO:0016491 ... P76342 15355966
    62796 1xdq:E (2.55) BS01 O 1.8.5.- GO:0016491 ... P76342 15355966
    62797 1xds:A (2.3) BS01 SAM 4.1.1.- GO:0003824 ... Q54527 15548527
    62798 1xds:A (2.3) BS02 DRA 4.1.1.- GO:0003824 ... Q54527 15548527
    62799 1xds:B (2.3) BS01 SAM 4.1.1.- GO:0003824 ... Q54527 15548527
    62800 1xds:B (2.3) BS02 DRA 4.1.1.- GO:0003824 ... Q54527 15548527

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).