SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    6401 1c8i:A (2.0) BS02 CA 1.11.1.7 GO:0000302 ... P28313 10915789
    6402 1c8i:A (2.0) BS03 CA 1.11.1.7 GO:0000302 ... P28313 10915789
    6403 1c8i:A (2.0) BS04 HEM 1.11.1.7 GO:0000302 ... P28313 10915789
    6404 1c8i:A (2.0) BS05 HOA 1.11.1.7 GO:0000302 ... P28313 10915789
    6405 1c8j:A (2.1) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 N/A
    6406 1c8j:B (2.1) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 N/A
    6407 1c8k:A (1.76) BS01 PLP 2.4.1.1 GO:0004645 ... P00489 10924512
    6408 1c8k:A (1.76) BS02 CPB 2.4.1.1 GO:0004645 ... P00489 10924512 MOAD: ic50=1uM
    BindingDB: IC50=1200nM
    6409 1c8l:A (2.3) BS01 PLP 2.4.1.1 GO:0004645 ... P00489 11368311
    6410 1c8l:A (2.3) BS02 BIN 2.4.1.1 GO:0004645 ... P00489 11368311 MOAD: ic50=6.9nM
    6411 1c8l:A (2.3) BS03 CFF 2.4.1.1 GO:0004645 ... P00489 11368311 MOAD: ic50=0.45mM
    BindingDB: IC50=114000nM
    6412 1c8m:1 (2.8) BS01 peptide 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    N/A Q82122 N/A
    6413 1c8m:1 (2.8) BS02 W11 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    N/A Q82122 N/A
    6414 1c8m:3 (2.8) BS01 peptide 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0005198 ... Q82122 N/A
    6415 1c8n:A (2.25) BS01 CA ? GO:0005198 ... Q9IPS9 10864506
    6416 1c8n:A (2.25) BS02 CA ? GO:0005198 ... Q9IPS9 10864506
    6417 1c8n:A (2.25) BS03 CA ? GO:0005198 ... Q9IPS9 10864506
    6418 1c8n:B (2.25) BS01 CA ? GO:0005198 ... Q9IPS9 10864506
    6419 1c8n:B (2.25) BS02 CA ? GO:0005198 ... Q9IPS9 10864506
    6420 1c8n:C (2.25) BS01 CA ? GO:0005198 ... Q9IPS9 10864506
    6421 1c8n:C (2.25) BS02 CA ? GO:0005198 ... Q9IPS9 10864506
    6422 1c8n:C (2.25) BS03 CA ? GO:0005198 ... Q9IPS9 10864506
    6423 1c8q:A (2.3) BS01 CA 3.2.1.1 GO:0003824 ... P0DUB6 N/A
    6424 1c8r:A (1.8) BS01 RET ? GO:0005216 ... P02945 10514362
    6425 1c8s:A (2.0) BS01 RET ? GO:0005216 ... P02945 10514362
    6426 1c8t:A (2.6) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 10877850
    6427 1c8t:A (2.6) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 10877850
    6428 1c8t:A (2.6) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10877850
    6429 1c8t:A (2.6) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10877850
    6430 1c8t:A (2.6) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10877850
    6431 1c8t:A (2.6) BS06 TR1 3.4.24.17 GO:0004222 ... P08254 10877850
    6432 1c8t:B (2.6) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 10877850
    6433 1c8t:B (2.6) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 10877850
    6434 1c8t:B (2.6) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10877850
    6435 1c8t:B (2.6) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10877850
    6436 1c8t:B (2.6) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10877850
    6437 1c8t:B (2.6) BS06 TR1 3.4.24.17 GO:0004222 ... P08254 10877850
    6438 1c8v:A (2.2) BS01 HE1 4.2.1.20 GO:0000162 ... P00929 10504236 MOAD: ic50=472nM
    6439 1c8v:B (2.2) BS01 PLP 4.2.1.20 GO:0000162 ... P0A2K1 10504236
    6440 1c8y:A (2.0) BS01 ZN 3.2.1.96 GO:0005576 ... P04067 10595536
    6441 1c96:A (1.81) BS01 FLC 4.2.1.3 GO:0003994 ... P20004 10631981
    6442 1c96:A (1.81) BS02 SF4 4.2.1.3 GO:0003994 ... P20004 10631981
    6443 1c97:A (1.98) BS01 SF4 4.2.1.3 GO:0003994 ... P20004 10631981
    6444 1c97:A (1.98) BS02 O 4.2.1.3 GO:0003994 ... P20004 10631981
    6445 1c9b:A (2.65) BS01 dna 2.3.1.48 GO:0006352 ... Q00403 10619841
    6446 1c9b:A (2.65) BS02 dna 2.3.1.48 GO:0006352 ... Q00403 10619841
    6447 1c9b:A (2.65) BS03 dna 2.3.1.48 GO:0006352 ... Q00403 10619841
    6448 1c9b:A (2.65) BS04 dna 2.3.1.48 GO:0006352 ... Q00403 10619841
    6449 1c9b:B (2.65) BS01 dna ? GO:0003677 ... P20226 10619841
    6450 1c9b:B (2.65) BS02 dna ? GO:0003677 ... P20226 10619841
    6451 1c9b:E (2.65) BS01 dna 2.3.1.48 GO:0006352 ... Q00403 10619841
    6452 1c9b:E (2.65) BS02 dna 2.3.1.48 GO:0006352 ... Q00403 10619841
    6453 1c9b:E (2.65) BS03 dna 2.3.1.48 GO:0006352 ... Q00403 10619841
    6454 1c9b:E (2.65) BS04 dna 2.3.1.48 GO:0006352 ... Q00403 10619841
    6455 1c9b:F (2.65) BS01 dna ? GO:0003677 ... P20226 10619841
    6456 1c9b:F (2.65) BS02 dna ? GO:0003677 ... P20226 10619841
    6457 1c9b:I (2.65) BS01 dna 2.3.1.48 GO:0006352 ... Q00403 10619841
    6458 1c9b:I (2.65) BS02 dna 2.3.1.48 GO:0006352 ... Q00403 10619841
    6459 1c9b:I (2.65) BS03 dna 2.3.1.48 GO:0006352 ... Q00403 10619841
    6460 1c9b:J (2.65) BS01 dna ? GO:0003677 ... P20226 10619841
    6461 1c9b:J (2.65) BS02 dna ? GO:0003677 ... P20226 10619841
    6462 1c9b:M (2.65) BS01 dna 2.3.1.48 GO:0006352 ... Q00403 10619841
    6463 1c9b:M (2.65) BS02 dna 2.3.1.48 GO:0006352 ... Q00403 10619841
    6464 1c9b:M (2.65) BS03 dna 2.3.1.48 GO:0006352 ... Q00403 10619841
    6465 1c9b:N (2.65) BS01 dna ? GO:0003677 ... P20226 10619841
    6466 1c9b:N (2.65) BS02 dna ? GO:0003677 ... P20226 10619841
    6467 1c9b:Q (2.65) BS01 dna 2.3.1.48 GO:0006352 ... Q00403 10619841
    6468 1c9b:Q (2.65) BS02 dna 2.3.1.48 GO:0006352 ... Q00403 10619841
    6469 1c9b:R (2.65) BS01 dna ? GO:0003677 ... P20226 10619841
    6470 1c9b:R (2.65) BS02 dna ? GO:0003677 ... P20226 10619841
    6471 1c9c:A (2.4) BS01 PP3 2.6.1.1 GO:0003824 ... P00509 10858450
    6472 1c9d:A (2.3) BS01 HF1 4.2.1.20 GO:0000162 ... P00929 10504236 MOAD: ic50=499nM
    6473 1c9d:B (2.3) BS01 PLP 4.2.1.20 GO:0000162 ... P0A2K1 10504236
    6474 1c9e:A (2.3) BS01 MP1 4.99.1.9 GO:0004325 ... P32396 10704318
    6475 1c9h:A (2.0) BS01 RAP 5.2.1.8 GO:0003755 ... P68106 10713512 BindingDB: Kd=0.200000nM
    6476 1c9i:A (2.9) BS01 peptide ? GO:0005198 ... P11442 10655490
    6477 1c9i:B (2.9) BS01 peptide ? GO:0005198 ... P11442 10655490
    6478 1c9j:A (1.8) BS01 CA 3.4.21.62 GO:0004252 ... P29600 10493860
    6479 1c9j:A (1.8) BS02 CA 3.4.21.62 GO:0004252 ... P29600 10493860
    6480 1c9k:A (2.2) BS01 5GP 2.7.1.156
    2.7.7.62
    GO:0000166 ... Q05599 10529169
    6481 1c9k:B (2.2) BS01 5GP 2.7.1.156
    2.7.7.62
    GO:0000166 ... Q05599 10529169
    6482 1c9k:C (2.2) BS01 MG 2.7.1.156
    2.7.7.62
    GO:0000166 ... Q05599 10529169
    6483 1c9k:C (2.2) BS02 POP 2.7.1.156
    2.7.7.62
    GO:0000166 ... Q05599 10529169
    6484 1c9k:C (2.2) BS03 5GP 2.7.1.156
    2.7.7.62
    GO:0000166 ... Q05599 10529169
    6485 1c9l:A (2.9) BS01 peptide ? GO:0005198 ... P11442 10655490
    6486 1c9l:B (2.9) BS01 peptide ? GO:0005198 ... P11442 10655490
    6487 1c9m:A (1.67) BS01 CA 3.4.21.62 GO:0004252 ... P29600 10493860
    6488 1c9m:A (1.67) BS02 CA 3.4.21.62 GO:0004252 ... P29600 10493860
    6489 1c9n:A (1.5) BS01 CA 3.4.21.62 GO:0004252 ... P29600 10493860
    6490 1c9n:A (1.5) BS02 CA 3.4.21.62 GO:0004252 ... P29600 10493860
    6491 1c9o:A (1.17) BS01 NA ? GO:0003676 ... P41016 10736231
    6492 1c9o:B (1.17) BS01 NA ? GO:0003676 ... P41016 10736231
    6493 1c9p:A (2.8) BS01 CA 3.4.21.4 GO:0004252 ... P00761 10512718
    6494 1c9q:A (-1.00) BS01 ZN 2.3.2.27 N/A P98170 10548111
    6495 1c9s:A (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 10499579
    6496 1c9s:A (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    6497 1c9s:A (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 10499579
    6498 1c9s:B (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 10499579
    6499 1c9s:B (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    6500 1c9s:C (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 10499579
    6501 1c9s:C (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    6502 1c9s:D (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 10499579
    6503 1c9s:D (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    6504 1c9s:E (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 10499579
    6505 1c9s:E (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    6506 1c9s:F (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 10499579
    6507 1c9s:F (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    6508 1c9s:G (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 10499579
    6509 1c9s:G (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    6510 1c9s:H (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 10499579
    6511 1c9s:H (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    6512 1c9s:I (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 10499579
    6513 1c9s:I (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    6514 1c9s:J (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 10499579
    6515 1c9s:J (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    6516 1c9s:K (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 10499579
    6517 1c9s:K (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    6518 1c9s:L (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 10499579
    6519 1c9s:L (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    6520 1c9s:L (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 10499579
    6521 1c9s:M (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 10499579
    6522 1c9s:M (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    6523 1c9s:M (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 10499579
    6524 1c9s:N (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 10499579
    6525 1c9s:N (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    6526 1c9s:N (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 10499579
    6527 1c9s:O (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 10499579
    6528 1c9s:O (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    6529 1c9s:O (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 10499579
    6530 1c9s:P (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 10499579
    6531 1c9s:P (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    6532 1c9s:P (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 10499579
    6533 1c9s:Q (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 10499579
    6534 1c9s:Q (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    6535 1c9s:Q (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 10499579
    6536 1c9s:R (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 10499579
    6537 1c9s:R (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    6538 1c9s:R (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 10499579
    6539 1c9s:S (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 10499579
    6540 1c9s:S (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    6541 1c9s:S (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 10499579
    6542 1c9s:T (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 10499579
    6543 1c9s:T (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    6544 1c9s:T (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 10499579
    6545 1c9s:U (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 10499579
    6546 1c9s:U (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    6547 1c9s:U (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 10499579
    6548 1c9s:V (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 10499579
    6549 1c9s:V (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    6550 1c9s:V (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 10499579
    6551 1c9u:A (2.2) BS01 CA 1.1.5.2 GO:0008876 ... P13650 10508152
    6552 1c9u:A (2.2) BS02 CA 1.1.5.2 GO:0008876 ... P13650 10508152
    6553 1c9u:A (2.2) BS03 CA 1.1.5.2 GO:0008876 ... P13650 10508152
    6554 1c9u:A (2.2) BS04 PQQ 1.1.5.2 GO:0008876 ... P13650 10508152
    6555 1c9u:B (2.2) BS01 CA 1.1.5.2 GO:0008876 ... P13650 10508152
    6556 1c9u:B (2.2) BS02 CA 1.1.5.2 GO:0008876 ... P13650 10508152
    6557 1c9u:B (2.2) BS03 CA 1.1.5.2 GO:0008876 ... P13650 10508152
    6558 1c9u:B (2.2) BS04 PQQ 1.1.5.2 GO:0008876 ... P13650 10508152
    6559 1c9w:A (2.4) BS01 NAP 1.1.1.21 GO:0004032 ... O08782 10651037
    6560 1c9y:A (1.9) BS01 NVA 2.1.3.3 GO:0000050 ... P00480 10813810
    6561 1c9y:A (1.9) BS02 CP 2.1.3.3 GO:0000050 ... P00480 10813810
    6562 1ca0:B (2.1) BS01 peptide 3.4.21.1 GO:0004252 ... P00766 9300481
    6563 1ca0:C (2.1) BS01 peptide 3.4.21.1 GO:0004252 ... P00766 9300481
    6564 1ca0:G (2.1) BS01 peptide 3.4.21.1 GO:0004252 ... P00766 9300481
    6565 1ca0:H (2.1) BS01 peptide 3.4.21.1 GO:0004252 ... P00766 9300481
    6566 1ca1:A (1.9) BS01 ZN 3.1.4.3 GO:0004629 ... P0C216 9699639
    6567 1ca2:A (2.0) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 3151019
    6568 1ca3:A (2.3) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 N/A
    6569 1ca5:A (2.2) BS01 dna ? GO:0003677 ... P13123 11031116
    6570 1ca5:A (2.2) BS02 dna ? GO:0003677 ... P13123 11031116
    6571 1ca6:A (2.2) BS01 dna ? GO:0003677 ... P13123 11031116
    6572 1ca6:A (2.2) BS02 dna ? GO:0003677 ... P13123 11031116
    6573 1ca7:A (2.5) BS01 ENO 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 10353846
    6574 1ca7:A (2.5) BS02 ENO 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 10353846
    6575 1ca7:B (2.5) BS01 ENO 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 10353846
    6576 1ca7:B (2.5) BS02 ENO 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 10353846
    6577 1ca7:C (2.5) BS01 ENO 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 10353846
    6578 1ca7:C (2.5) BS02 ENO 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 10353846
    6579 1ca8:B (2.1) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 9724521
    6580 1ca8:B (2.1) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 9724521
    6581 1ca8:B (2.1) BS03 0KV 3.4.21.5 GO:0004252 ... P00734 9724521 BindingDB: IC50=0.67nM
    6582 1ca9:A (2.3) BS01 peptide 2.3.2.27 GO:0004842 ... Q12933 10206649
    6583 1ca9:B (2.3) BS01 peptide 2.3.2.27 GO:0004842 ... Q12933 10206649
    6584 1ca9:E (2.3) BS01 peptide 2.3.2.27 GO:0004842 ... Q12933 10206649
    6585 1caa:A (1.8) BS01 FE ? GO:0005506 ... P24297 1303768
    6586 1cad:A (1.8) BS01 FE ? GO:0005506 ... P24297 1303768
    6587 1cag:B (1.85) BS01 peptide N/A N/A N/A 7695699
    6588 1cag:B (1.85) BS02 peptide N/A N/A N/A 7695699
    6589 1cah:A (1.88) BS01 CO 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 1474587
    6590 1cah:A (1.88) BS02 BCT 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 1474587 BindingDB: Ki=85000000nM
    6591 1cai:A (1.8) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 7901850
    6592 1cai:A (1.8) BS02 SO4 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 7901850
    6593 1caj:A (1.9) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 7901850
    6594 1caj:A (1.9) BS02 SO4 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 7901850
    6595 1cak:A (1.9) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 7901850
    6596 1cak:A (1.9) BS02 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 7901850
    6597 1cak:A (1.9) BS03 SO4 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 7901850
    6598 1cal:A (2.2) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 7901850
    6599 1cam:A (1.7) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 7901850
    6600 1cam:A (1.7) BS02 BCT 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 7901850 BindingDB: Ki=85000000nM

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).