SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    67001 1ysz:A (2.65) BS01 NEC ? GO:0005524 ... P41148 15951571
    67002 1yt0:A (2.4) BS01 ADP ? GO:0005524 ... P41148 15951571
    67003 1yt3:A (1.6) BS01 ZN 3.1.13.5 GO:0000166 ... P09155 16004870
    67004 1yt7:A (2.3) BS01 3FC 3.4.22.38 GO:0006508 ... P43235 15982880 BindingDB: IC50=130nM
    67005 1yt8:A (1.9) BS01 SO3 2.8.1.1 GO:0004792 ... Q9I0N4 N/A
    67006 1yt9:A (3.0) BS01 OIS 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P03366 15837308
    67007 1yt9:B (3.0) BS01 OIS 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P03366 15837308
    67008 1ytb:A (1.8) BS01 dna ? GO:0003677 ... P13393 8413604
    67009 1ytb:B (1.8) BS01 dna ? GO:0003677 ... P13393 8413604
    67010 1ytc:A (1.8) BS01 HEC ? GO:0005739 ... P00045 8639684
    67011 1yte:A (2.75) BS01 PCP 6.3.4.21 GO:0004514 ... Q9HJ28 15753098
    67012 1ytf:A (2.5) BS01 dna ? GO:0003677 ... P13393 8610010
    67013 1ytf:A (2.5) BS02 dna ? GO:0003677 ... P13393 8610010
    67014 1ytf:C (2.5) BS01 dna ? GO:0005672 ... P32773 8610010
    67015 1ytg:B (2.3) BS01 peptide 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P03369 8841139
    67016 1yth:A (2.2) BS01 peptide 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P03369 8841139
    67017 1yth:B (2.2) BS01 peptide 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P03369 8841139
    67018 1yti:A (2.2) BS01 peptide 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P05896 8841139
    67019 1ytj:A (2.5) BS01 peptide 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P05896 8841139
    67020 1ytk:A (2.65) BS01 NCN 6.3.4.21 GO:0004514 ... Q9HJ28 15753098
    67021 1ytm:A (2.2) BS01 MN 4.1.1.49 GO:0004611 ... O09460 15890557
    67022 1ytm:A (2.2) BS02 ATP 4.1.1.49 GO:0004611 ... O09460 15890557
    67023 1ytm:A (2.2) BS03 OXD 4.1.1.49 GO:0004611 ... O09460 15890557
    67024 1ytm:B (2.2) BS01 MN 4.1.1.49 GO:0004611 ... O09460 15890557
    67025 1ytm:B (2.2) BS02 ATP 4.1.1.49 GO:0004611 ... O09460 15890557
    67026 1ytm:B (2.2) BS03 OXD 4.1.1.49 GO:0004611 ... O09460 15890557
    67027 1ytn:A (2.4) BS01 NO3 3.1.3.48 GO:0004725 ... P15273 8702535
    67028 1yts:A (2.5) BS01 SO4 3.1.3.48 GO:0004725 ... P15273 8528087
    67029 1yts:A (2.5) BS02 SO4 3.1.3.48 GO:0004725 ... P15273 8528087
    67030 1ytu:A (2.5) BS01 rna ? GO:0003676 ... O28951 15800629
    67031 1ytu:A (2.5) BS02 rna ? GO:0003676 ... O28951 15800629
    67032 1ytu:A (2.5) BS03 MG ? GO:0003676 ... O28951 15800629
    67033 1ytu:B (2.5) BS01 rna ? GO:0003676 ... O28951 15800629
    67034 1ytu:B (2.5) BS02 rna ? GO:0003676 ... O28951 15800629
    67035 1ytu:B (2.5) BS03 MG ? GO:0003676 ... O28951 15800629
    67036 1ytv:A (1.8) BS01 peptide ? GO:0005515 ... P0AEX9 16511036
    67037 1ytv:A (1.8) BS02 GLC ? GO:0005515 ... P0AEX9 16511036
    67038 1ytv:A (1.8) BS03 GLC ? GO:0005515 ... P0AEX9 16511036
    67039 1ytv:B (1.8) BS01 peptide ? GO:0005515 ... P0AEX9 16511036
    67040 1ytv:B (1.8) BS02 GLC ? GO:0005515 ... P0AEX9 16511036
    67041 1ytv:B (1.8) BS03 GLC ? GO:0005515 ... P0AEX9 16511036
    67042 1ytw:A (2.4) BS01 WO4 3.1.3.48 GO:0004725 ... P15273 8702535
    67043 1yty:A (2.29) BS01 rna ? GO:0003676 ... P05455 16387655
    67044 1yty:A (2.29) BS02 rna ? GO:0003676 ... P05455 16387655
    67045 1yty:B (2.29) BS01 rna ? GO:0003676 ... P05455 16387655
    67046 1yty:B (2.29) BS02 rna ? GO:0003676 ... P05455 16387655
    67047 1ytz:C (3.0) BS01 CA ? GO:0003009 ... P02588 15784741
    67048 1ytz:C (3.0) BS02 CA ? GO:0003009 ... P02588 15784741
    67049 1ytz:C (3.0) BS03 CA ? GO:0003009 ... P02588 15784741
    67050 1ytz:C (3.0) BS04 CA ? GO:0003009 ... P02588 15784741
    67051 1ytz:C (3.0) BS05 DR6 ? GO:0003009 ... P02588 15784741
    67052 1ytz:I (3.0) BS01 DR6 ? GO:0003009 ... P68246 15784741
    67053 1ytz:I (3.0) BS02 DR6 ? GO:0003009 ... P68246 15784741
    67054 1ytz:T (3.0) BS01 DR6 ? GO:0005861 ... P12620 15784741
    67055 1yu0:A (1.56) BS01 CA ? GO:0005515 ... Q775D6 16170324
    67056 1yu4:A (1.87) BS01 MG ? GO:0005515 ... Q775D6 16170324
    67057 1yu4:B (1.87) BS01 MG ? GO:0005515 ... Q775D6 16170324
    67058 1yu4:C (1.87) BS01 MG ? GO:0005515 ... Q775D6 16170324
    67059 1yu6:A (1.55) BS01 CA 3.4.21.62 GO:0004252 ... P00780 15858268
    67060 1yu6:B (1.55) BS01 CA 3.4.21.62 GO:0004252 ... P00780 15858268
    67061 1yu9:A (2.07) BS01 MG 3.6.5.2 GO:0003924 ... P20338 16034420
    67062 1yu9:A (2.07) BS02 GNP 3.6.5.2 GO:0003924 ... P20338 16034420
    67063 1yuc:A (1.9) BS01 peptide ? GO:0003677 ... O00482 15723037
    67064 1yuc:A (1.9) BS02 EPH ? GO:0003677 ... O00482 15723037
    67065 1yuc:A (1.9) BS03 EPH ? GO:0003677 ... O00482 15723037
    67066 1yuc:B (1.9) BS01 peptide ? GO:0003677 ... O00482 15723037
    67067 1yuc:B (1.9) BS02 EPH ? GO:0003677 ... O00482 15723037
    67068 1yuh:B (3.0) BS01 NP N/A N/A N/A 8544863
    67069 1yuh:H (3.0) BS01 NP N/A N/A N/A 8544863
    67070 1yuh:L (3.0) BS01 NP N/A N/A N/A 8544863
    67071 1yui:A (-1.00) BS01 dna ? N/A Q08605 9033593
    67072 1yui:A (-1.00) BS02 dna ? N/A Q08605 9033593
    67073 1yui:A (-1.00) BS03 ZN ? N/A Q08605 9033593
    67074 1yuj:A (-1.00) BS01 dna ? N/A Q08605 9033593
    67075 1yuj:A (-1.00) BS02 dna ? N/A Q08605 9033593
    67076 1yuj:A (-1.00) BS03 ZN ? N/A Q08605 9033593
    67077 1yum:A (1.7) BS01 NCN 2.7.7.18 GO:0000309 ... Q9HX21 16009375
    67078 1yum:B (1.7) BS01 NCN 2.7.7.18 GO:0000309 ... Q9HX21 16009375
    67079 1yum:C (1.7) BS01 NCN 2.7.7.18 GO:0000309 ... Q9HX21 16009375
    67080 1yum:D (1.7) BS01 NCN 2.7.7.18 GO:0000309 ... Q9HX21 16009375
    67081 1yun:A (2.0) BS01 ATP 2.7.7.18 GO:0000309 ... Q9HX21 16009375
    67082 1yun:B (2.0) BS01 MG 2.7.7.18 GO:0000309 ... Q9HX21 16009375
    67083 1yun:B (2.0) BS02 ATP 2.7.7.18 GO:0000309 ... Q9HX21 16009375
    67084 1yut:A (-1.00) BS01 CA ? GO:0001819 ... Q99584 16145699
    67085 1yut:A (-1.00) BS02 CA ? GO:0001819 ... Q99584 16145699
    67086 1yut:B (-1.00) BS01 CA ? GO:0001819 ... Q99584 16145699
    67087 1yut:B (-1.00) BS02 CA ? GO:0001819 ... Q99584 16145699
    67088 1yuu:A (-1.00) BS01 CA ? GO:0001819 ... Q99584 16145699
    67089 1yuu:A (-1.00) BS02 CA ? GO:0001819 ... Q99584 16145699
    67090 1yuu:B (-1.00) BS01 CA ? GO:0001819 ... Q99584 16145699
    67091 1yuu:B (-1.00) BS02 CA ? GO:0001819 ... Q99584 16145699
    67092 1yux:A (1.6) BS01 FE ? GO:0005506 ... P30820 15895271
    67093 1yux:A (1.6) BS02 FE2 ? GO:0005506 ... P30820 15895271
    67094 1yux:A (1.6) BS03 FE ? GO:0005506 ... P30820 15895271
    67095 1yux:B (1.6) BS01 FE ? GO:0005506 ... P30820 15895271
    67096 1yux:B (1.6) BS02 FE2 ? GO:0005506 ... P30820 15895271
    67097 1yux:B (1.6) BS03 FE ? GO:0005506 ... P30820 15895271
    67098 1yuz:A (1.4) BS01 FE ? GO:0005506 ... P30820 15895271
    67099 1yuz:A (1.4) BS02 FE2 ? GO:0005506 ... P30820 15895271
    67100 1yuz:A (1.4) BS03 FE ? GO:0005506 ... P30820 15895271
    67101 1yuz:B (1.4) BS01 FE ? GO:0005506 ... P30820 15895271
    67102 1yuz:B (1.4) BS02 FE2 ? GO:0005506 ... P30820 15895271
    67103 1yuz:B (1.4) BS03 FE ? GO:0005506 ... P30820 15895271
    67104 1yv0:C (7.0) BS01 MG ? GO:0003009 ... P02588 15784741
    67105 1yv0:C (7.0) BS02 MG ? GO:0003009 ... P02588 15784741
    67106 1yv1:A (1.5) BS01 FE2 ? GO:0005506 ... P30820 15895271
    67107 1yv1:A (1.5) BS02 FE2 ? GO:0005506 ... P30820 15895271
    67108 1yv1:A (1.5) BS03 FE2 ? GO:0005506 ... P30820 15895271
    67109 1yv1:B (1.5) BS01 FE2 ? GO:0005506 ... P30820 15895271
    67110 1yv1:B (1.5) BS02 FE2 ? GO:0005506 ... P30820 15895271
    67111 1yv1:B (1.5) BS03 FE2 ? GO:0005506 ... P30820 15895271
    67112 1yv3:A (2.0) BS01 MG ? GO:0003774 ... P08799 15750603
    67113 1yv3:A (2.0) BS02 ADP ? GO:0003774 ... P08799 15750603
    67114 1yv3:A (2.0) BS03 BIT ? GO:0003774 ... P08799 15750603 BindingDB: IC50=4900nM
    67115 1yv5:A (2.0) BS01 MG 2.5.1.1
    2.5.1.10
    GO:0004659 ... P14324 16684881
    67116 1yv5:A (2.0) BS02 MG 2.5.1.1
    2.5.1.10
    GO:0004659 ... P14324 16684881
    67117 1yv5:A (2.0) BS03 PO4 2.5.1.1
    2.5.1.10
    GO:0004659 ... P14324 16684881
    67118 1yv5:A (2.0) BS04 PO4 2.5.1.1
    2.5.1.10
    GO:0004659 ... P14324 16684881
    67119 1yv5:A (2.0) BS05 RIS 2.5.1.1
    2.5.1.10
    GO:0004659 ... P14324 16684881 BindingDB: IC50=11nM, Ki=82.2nM
    67120 1yvd:A (1.93) BS01 MG ? GO:0003924 ... P35285 16034420
    67121 1yvd:A (1.93) BS02 GNP ? GO:0003924 ... P35285 16034420
    67122 1yve:I (1.65) BS01 MG 1.1.1.86 GO:0004455 ... Q01292 9218783
    67123 1yve:I (1.65) BS02 NDP 1.1.1.86 GO:0004455 ... Q01292 9218783
    67124 1yve:I (1.65) BS03 HIO 1.1.1.86 GO:0004455 ... Q01292 9218783
    67125 1yve:J (1.65) BS01 MG 1.1.1.86 GO:0004455 ... Q01292 9218783
    67126 1yve:J (1.65) BS02 HIO 1.1.1.86 GO:0004455 ... Q01292 9218783
    67127 1yve:J (1.65) BS03 NDP 1.1.1.86 GO:0004455 ... Q01292 9218783
    67128 1yve:K (1.65) BS01 MG 1.1.1.86 GO:0004455 ... Q01292 9218783
    67129 1yve:K (1.65) BS02 NDP 1.1.1.86 GO:0004455 ... Q01292 9218783
    67130 1yve:K (1.65) BS03 HIO 1.1.1.86 GO:0004455 ... Q01292 9218783
    67131 1yve:L (1.65) BS01 NDP 1.1.1.86 GO:0004455 ... Q01292 9218783
    67132 1yve:L (1.65) BS02 MG 1.1.1.86 GO:0004455 ... Q01292 9218783
    67133 1yve:L (1.65) BS03 HIO 1.1.1.86 GO:0004455 ... Q01292 9218783
    67134 1yvf:A (2.5) BS01 PH7 3.4.21.98
    3.6.1.15
    3.6.4.13
    GO:0003723 ... O93077 15863301 MOAD: ic50=0.1uM
    67135 1yvg:A (2.6) BS01 ZN 3.4.24.68 GO:0004222 ... P04958 15904688
    67136 1yvh:A (2.05) BS01 peptide 2.3.2.27 GO:0001784 ... P22681 15737992
    67137 1yvh:A (2.05) BS02 MG 2.3.2.27 GO:0001784 ... P22681 15737992
    67138 1yvj:A (2.55) BS01 4ST 2.7.10.2 GO:0004672 ... P52333 15831699
    67139 1yvk:A (3.01) BS01 COA 2.3.1.- GO:0008080 ... O32248 N/A
    67140 1yvk:B (3.01) BS01 COA 2.3.1.- GO:0008080 ... O32248 N/A
    67141 1yvk:C (3.01) BS01 COA 2.3.1.- GO:0008080 ... O32248 N/A
    67142 1yvk:D (3.01) BS01 COA 2.3.1.- GO:0008080 ... O32248 N/A
    67143 1yvl:A (3.0) BS01 peptide ? GO:0000122 ... P42224 15780933
    67144 1yvl:B (3.0) BS01 peptide ? GO:0000122 ... P42224 15780933
    67145 1yvm:A (1.6) BS01 CO 3.4.11.18 GO:0004239 ... P0AE18 15880695
    67146 1yvm:A (1.6) BS02 CO 3.4.11.18 GO:0004239 ... P0AE18 15880695
    67147 1yvm:A (1.6) BS03 TMG 3.4.11.18 GO:0004239 ... P0AE18 15880695 MOAD: Ki=0.4uM
    BindingDB: IC50=472nM
    67148 1yvn:A (2.1) BS01 ATP 3.6.4.- GO:0000011 ... P60010 N/A
    67149 1yvn:G (2.1) BS01 CA ? GO:0051015 ... P06396 N/A
    67150 1yvp:A (2.2) BS01 rna ? GO:0003723 ... P42700 15907467
    67151 1yvp:A (2.2) BS02 rna ? GO:0003723 ... P42700 15907467
    67152 1yvp:A (2.2) BS03 rna ? GO:0003723 ... P42700 15907467
    67153 1yvp:A (2.2) BS04 MG ? GO:0003723 ... P42700 15907467
    67154 1yvp:B (2.2) BS01 rna ? GO:0003723 ... P42700 15907467
    67155 1yvp:B (2.2) BS02 rna ? GO:0003723 ... P42700 15907467
    67156 1yvp:B (2.2) BS03 rna ? GO:0003723 ... P42700 15907467
    67157 1yvp:B (2.2) BS04 MG ? GO:0003723 ... P42700 15907467
    67158 1yvq:A (1.8) BS01 HEM ? GO:0004601 ... P69905 N/A
    67159 1yvq:B (1.8) BS01 HEM ? GO:0004601 ... P68871 N/A
    67160 1yvq:C (1.8) BS01 HEM ? GO:0004601 ... P69905 N/A
    67161 1yvq:D (1.8) BS01 HEM ? GO:0004601 ... P68871 N/A
    67162 1yvt:A (1.8) BS01 HEM ? GO:0004601 ... P69905 N/A
    67163 1yvt:B (1.8) BS01 HEM ? GO:0004601 ... P68871 N/A
    67164 1yvu:A (2.9) BS01 CA 3.1.26.- GO:0003676 ... O67434 16061186
    67165 1yvx:A (2.0) BS01 IPC 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0003723 ... P26660 15746101 MOAD: ic50=8uM
    67166 1yvz:A (2.2) BS01 JPC 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0003723 ... P26660 15746101 MOAD: ic50=4.4uM
    67167 1yw0:A (2.7) BS01 MG 1.13.11.11 GO:0004833 ... Q8PDA8 N/A
    67168 1yw0:B (2.7) BS01 MG 1.13.11.11 GO:0004833 ... Q8PDA8 N/A
    67169 1yw0:C (2.7) BS01 MG 1.13.11.11 GO:0004833 ... Q8PDA8 N/A
    67170 1yw0:C (2.7) BS02 MG 1.13.11.11 GO:0004833 ... Q8PDA8 N/A
    67171 1yw1:A (2.81) BS01 GLC 1.14.14.- GO:0004497 ... O34974 N/A
    67172 1yw1:A (2.81) BS02 FMN 1.14.14.- GO:0004497 ... O34974 N/A
    67173 1yw2:A (2.01) BS01 PGJ 2.7.11.24 GO:0000077 ... P47811 15837333 MOAD: ic50=141nM
    67174 1yw4:A (2.0) BS01 ZN 3.5.1.96 GO:0008270 ... Q7NU26 N/A
    67175 1yw4:B (2.0) BS01 ZN 3.5.1.96 GO:0008270 ... Q7NU26 N/A
    67176 1yw7:A (1.85) BS01 MN 3.4.11.18 GO:0006508 ... P50579 16789740
    67177 1yw7:A (1.85) BS02 MN 3.4.11.18 GO:0006508 ... P50579 16789740
    67178 1yw7:A (1.85) BS03 A41 3.4.11.18 GO:0006508 ... P50579 16789740 MOAD: ic50=1.4uM
    BindingDB: IC50=1400nM
    67179 1yw8:A (2.65) BS01 MN 3.4.11.18 GO:0006508 ... P50579 16789740
    67180 1yw8:A (2.65) BS02 MN 3.4.11.18 GO:0006508 ... P50579 16789740
    67181 1yw8:A (2.65) BS03 A75 3.4.11.18 GO:0006508 ... P50579 16789740 BindingDB: IC50=10nM
    67182 1yw9:A (1.64) BS01 MN 3.4.11.18 GO:0006508 ... P50579 16789740
    67183 1yw9:A (1.64) BS02 MN 3.4.11.18 GO:0006508 ... P50579 16789740
    67184 1yw9:A (1.64) BS03 A84 3.4.11.18 GO:0006508 ... P50579 16789740 MOAD: ic50=0.019uM
    BindingDB: IC50=19nM
    67185 1ywa:A (0.89) BS01 HEM 1.7.6.1 GO:0005576 ... Q94734 16171383
    67186 1ywb:A (0.97) BS01 HEM 1.7.6.1 GO:0005576 ... Q94734 16171383
    67187 1ywc:A (1.0) BS01 HEM 1.7.6.1 GO:0005576 ... Q94734 16171383
    67188 1ywd:A (1.08) BS01 HEM 1.7.6.1 GO:0005576 ... Q94734 16171383
    67189 1ywf:A (1.71) BS01 PO4 ? GO:0004438 ... P96830 16271885
    67190 1ywg:O (2.6) BS01 NAD 1.2.1.12 GO:0004365 ... Q8T6B1 16131754
    67191 1ywg:P (2.6) BS01 NAD 1.2.1.12 GO:0004365 ... Q8T6B1 16131754
    67192 1ywg:Q (2.6) BS01 NAD 1.2.1.12 GO:0004365 ... Q8T6B1 16131754
    67193 1ywg:R (2.6) BS01 NAD 1.2.1.12 GO:0004365 ... Q8T6B1 16131754
    67194 1ywh:A (2.7) BS01 peptide ? GO:0001934 ... Q03405 15861141
    67195 1ywh:A (2.7) BS02 peptide ? GO:0001934 ... Q03405 15861141
    67196 1ywh:A (2.7) BS03 FUC ? GO:0001934 ... Q03405 15861141
    67197 1ywh:C (2.7) BS01 peptide ? GO:0001934 ... Q03405 15861141
    67198 1ywh:C (2.7) BS02 peptide ? GO:0001934 ... Q03405 15861141
    67199 1ywh:E (2.7) BS01 peptide ? GO:0001934 ... Q03405 15861141
    67200 1ywh:E (2.7) BS02 peptide ? GO:0001934 ... Q03405 15861141

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).