SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    7201 1ck7:A (2.8) BS05 CA 3.4.24.24 GO:0001525 ... P08253 10356396
    7202 1cka:A (1.5) BS01 peptide ? N/A Q64010 7735837
    7203 1ckb:A (1.9) BS01 peptide ? N/A Q64010 7735837
    7204 1ckj:A (2.46) BS01 WO4 2.7.11.1
    2.7.11.26
    GO:0004672 ... Q06486 8648628
    7205 1ckj:B (2.46) BS01 WO4 2.7.11.1
    2.7.11.26
    GO:0004672 ... Q06486 8648628
    7206 1ckk:A (-1.00) BS01 peptide ? GO:0005102 ... P0DP33 10467092
    7207 1ckk:A (-1.00) BS02 CA ? GO:0005102 ... P0DP33 10467092
    7208 1ckk:A (-1.00) BS03 CA ? GO:0005102 ... P0DP33 10467092
    7209 1ckk:A (-1.00) BS04 CA ? GO:0005102 ... P0DP33 10467092
    7210 1ckk:A (-1.00) BS05 CA ? GO:0005102 ... P0DP33 10467092
    7211 1ckl:A (3.1) BS01 CA ? N/A P15529 10357804
    7212 1ckl:B (3.1) BS01 CA ? N/A P15529 10357804
    7213 1ckl:D (3.1) BS01 CA ? N/A P15529 10357804
    7214 1ckl:E (3.1) BS01 CA ? N/A P15529 10357804
    7215 1ckl:F (3.1) BS01 CA ? N/A P15529 10357804
    7216 1ckm:A (2.5) BS01 GTP 2.7.7.50 GO:0000166 ... Q84424 9160746
    7217 1ckm:B (2.5) BS01 GTP 2.7.7.50 GO:0000166 ... Q84424 9160746
    7218 1ckn:A (2.5) BS01 GTP 2.7.7.50 GO:0000166 ... Q84424 9160746
    7219 1cko:A (3.1) BS01 GP3 2.7.7.50 GO:0000166 ... Q84424 9465045
    7220 1ckp:A (2.05) BS01 PVB 2.7.11.22 GO:0000082 ... P24941 9677190 BindingDB: IC50=6nM
    7221 1ckq:A (1.85) BS01 dna 3.1.21.4 GO:0000287 ... P00642 N/A
    7222 1ckt:A (2.5) BS01 dna ? GO:0003677 ... P63159 10385126
    7223 1ckt:A (2.5) BS02 dna ? GO:0003677 ... P63159 10385126
    7224 1cku:A (1.2) BS01 SF4 ? GO:0009055 ... P00260 10531472
    7225 1cku:B (1.2) BS01 SF4 ? GO:0009055 ... P00260 10531472
    7226 1cl0:A (2.5) BS01 FAD 1.8.1.9 GO:0004791 ... P0A9P4 10595539
    7227 1cl1:A (1.83) BS01 BCT 4.4.1.13
    4.4.1.28
    GO:0000096 ... P06721 8831789
    7228 1cl1:B (1.83) BS01 BCT 4.4.1.13
    4.4.1.28
    GO:0000096 ... P06721 8831789
    7229 1cl2:A (2.2) BS01 PPG 4.4.1.13
    4.4.1.28
    GO:0000096 ... P06721 9376370
    7230 1cl2:B (2.2) BS01 PPG 4.4.1.13
    4.4.1.28
    GO:0000096 ... P06721 9376370
    7231 1cl4:A (-1.00) BS01 ZN ? GO:0003676 ... P07567 9827993
    7232 1cl6:A (1.7) BS01 HEM 1.7.1.14 GO:0004497 ... P23295 10671516
    7233 1cl6:A (1.7) BS02 NO 1.7.1.14 GO:0004497 ... P23295 10671516
    7234 1cl8:A (1.8) BS01 dna 3.1.21.4 GO:0000287 ... P00642 N/A
    7235 1cla:A (2.34) BS01 CO 2.3.1.28 GO:0008811 ... P00484 2109633
    7236 1cla:A (2.34) BS02 CLM 2.3.1.28 GO:0008811 ... P00484 2109633
    7237 1clc:A (1.9) BS01 CA 3.2.1.4 GO:0000272 ... P0C2S4 N/A
    7238 1clc:A (1.9) BS02 CA 3.2.1.4 GO:0000272 ... P0C2S4 N/A
    7239 1clc:A (1.9) BS03 CA 3.2.1.4 GO:0000272 ... P0C2S4 N/A
    7240 1clc:A (1.9) BS04 ZN 3.2.1.4 GO:0000272 ... P0C2S4 N/A
    7241 1cld:A (-1.00) BS01 CD ? GO:0000981 ... P08657 7552715
    7242 1cld:A (-1.00) BS02 CD ? GO:0000981 ... P08657 7552715
    7243 1cle:A (2.0) BS01 CLL 3.1.1.3 GO:0004806 ... P32947 7788294
    7244 1cle:B (2.0) BS01 CLL 3.1.1.3 GO:0004806 ... P32947 7788294
    7245 1clf:A (-1.00) BS01 SF4 ? GO:0005737 ... P00195 7556151
    7246 1clf:A (-1.00) BS02 SF4 ? GO:0005737 ... P00195 7556151
    7247 1cli:A (2.5) BS01 SO4 6.3.3.1 GO:0004637 ... P08178 10508786
    7248 1cli:B (2.5) BS01 SO4 6.3.3.1 GO:0004637 ... P08178 10508786
    7249 1cli:C (2.5) BS01 SO4 6.3.3.1 GO:0004637 ... P08178 10508786
    7250 1cli:D (2.5) BS01 SO4 6.3.3.1 GO:0004637 ... P08178 10508786
    7251 1clk:A (1.9) BS01 MG 5.3.1.5 GO:0000287 ... P50910 10666592
    7252 1clk:A (1.9) BS02 CO 5.3.1.5 GO:0000287 ... P50910 10666592
    7253 1cll:A (1.7) BS01 CA ? GO:0000922 ... P0DP23 1474585
    7254 1cll:A (1.7) BS02 CA ? GO:0000922 ... P0DP23 1474585
    7255 1cll:A (1.7) BS03 CA ? GO:0000922 ... P0DP23 1474585
    7256 1cll:A (1.7) BS04 CA ? GO:0000922 ... P0DP23 1474585
    7257 1clm:A (1.8) BS01 CA ? GO:0005509 ... P07463 8453381
    7258 1clm:A (1.8) BS02 CA ? GO:0005509 ... P07463 8453381
    7259 1clm:A (1.8) BS03 CA ? GO:0005509 ... P07463 8453381
    7260 1clm:A (1.8) BS04 CA ? GO:0005509 ... P07463 8453381
    7261 1clq:A (2.7) BS01 dna 2.7.7.7
    3.1.11.-
    GO:0000166 ... Q38087 10535734
    7262 1clq:A (2.7) BS02 dna 2.7.7.7
    3.1.11.-
    GO:0000166 ... Q38087 10535734
    7263 1clq:A (2.7) BS03 CA 2.7.7.7
    3.1.11.-
    GO:0000166 ... Q38087 10535734
    7264 1clq:A (2.7) BS04 CA 2.7.7.7
    3.1.11.-
    GO:0000166 ... Q38087 10535734
    7265 1clq:A (2.7) BS05 CA 2.7.7.7
    3.1.11.-
    GO:0000166 ... Q38087 10535734
    7266 1clq:A (2.7) BS06 CA 2.7.7.7
    3.1.11.-
    GO:0000166 ... Q38087 10535734
    7267 1clq:A (2.7) BS07 GDP 2.7.7.7
    3.1.11.-
    GO:0000166 ... Q38087 10535734
    7268 1cls:A (1.9) BS01 HEM ? GO:0004601 ... P69905 8639491
    7269 1cls:B (1.9) BS01 HEM ? GO:0004601 ... P68871 8639491
    7270 1cls:C (1.9) BS01 HEM ? GO:0004601 ... P69905 8639491
    7271 1cls:D (1.9) BS01 HEM ? GO:0004601 ... P68871 8639491
    7272 1cls:D (1.9) BS02 DEC ? GO:0004601 ... P68871 8639491
    7273 1clu:A (1.7) BS01 DBG 3.6.5.2 GO:0003924 ... P01112 10359839 MOAD: Kd=5.4nM
    7274 1clv:A (2.0) BS01 CA 3.2.1.1 GO:0003824 ... P56634 10508777
    7275 1clx:A (1.8) BS01 CA 3.2.1.8 GO:0004553 ... P14768 15299710
    7276 1clx:B (1.8) BS01 CA 3.2.1.8 GO:0004553 ... P14768 15299710
    7277 1clx:C (1.8) BS01 CA 3.2.1.8 GO:0004553 ... P14768 15299710
    7278 1clx:D (1.8) BS01 CA 3.2.1.8 GO:0004553 ... P14768 15299710
    7279 1cly:H (2.5) BS01 GAL N/A N/A N/A 7664109
    7280 1cly:H (2.5) BS02 FUC N/A N/A N/A 7664109
    7281 1cly:H (2.5) BS03 NON N/A N/A N/A 7664109
    7282 1clz:H (2.8) BS01 GAL ? N/A P03987 7664109
    7283 1clz:H (2.8) BS02 FUC ? N/A P03987 7664109
    7284 1clz:H (2.8) BS03 NON ? N/A P03987 7664109
    7285 1cm0:A (2.3) BS01 COA 2.3.1.48
    2.3.1.57
    GO:0004402 ... Q92831 10393169 BindingDB: IC50=41910nM
    7286 1cm0:B (2.3) BS01 COA 2.3.1.48
    2.3.1.57
    GO:0004402 ... Q92831 10393169 BindingDB: IC50=41910nM
    7287 1cm1:A (2.0) BS01 peptide ? GO:0000922 ... P62157 9438860
    7288 1cm1:A (2.0) BS02 CA ? GO:0000922 ... P62157 9438860
    7289 1cm1:A (2.0) BS03 CA ? GO:0000922 ... P62157 9438860
    7290 1cm1:A (2.0) BS04 CA ? GO:0000922 ... P62157 9438860
    7291 1cm1:A (2.0) BS05 CA ? GO:0000922 ... P62157 9438860
    7292 1cm1:A (2.0) BS06 CA ? GO:0000922 ... P62157 9438860
    7293 1cm4:A (2.0) BS01 peptide ? GO:0000922 ... P62157 9438860
    7294 1cm4:A (2.0) BS02 CA ? GO:0000922 ... P62157 9438860
    7295 1cm4:A (2.0) BS03 CA ? GO:0000922 ... P62157 9438860
    7296 1cm4:A (2.0) BS04 CA ? GO:0000922 ... P62157 9438860
    7297 1cm4:A (2.0) BS05 CA ? GO:0000922 ... P62157 9438860
    7298 1cm4:A (2.0) BS06 CA ? GO:0000922 ... P62157 9438860
    7299 1cm4:A (2.0) BS07 CA ? GO:0000922 ... P62157 9438860
    7300 1cm4:A (2.0) BS08 CA ? GO:0000922 ... P62157 9438860
    7301 1cm4:A (2.0) BS09 CA ? GO:0000922 ... P62157 9438860
    7302 1cm4:A (2.0) BS10 CA ? GO:0000922 ... P62157 9438860
    7303 1cm4:A (2.0) BS11 CA ? GO:0000922 ... P62157 9438860
    7304 1cm4:A (2.0) BS12 CA ? GO:0000922 ... P62157 9438860
    7305 1cm4:A (2.0) BS13 CA ? GO:0000922 ... P62157 9438860
    7306 1cm4:A (2.0) BS14 CA ? GO:0000922 ... P62157 9438860
    7307 1cm4:A (2.0) BS15 CA ? GO:0000922 ... P62157 9438860
    7308 1cm4:A (2.0) BS16 CA ? GO:0000922 ... P62157 9438860
    7309 1cm4:A (2.0) BS17 CA ? GO:0000922 ... P62157 9438860
    7310 1cm4:A (2.0) BS18 CA ? GO:0000922 ... P62157 9438860
    7311 1cm5:A (2.3) BS01 CO3 2.3.1.54 GO:0003824 ... P09373 10504733
    7312 1cm5:B (2.3) BS01 CO3 2.3.1.54 GO:0003824 ... P09373 10504733
    7313 1cm8:A (2.4) BS01 ANP 2.7.11.24 GO:0000165 ... P53778 10508788
    7314 1cm8:B (2.4) BS01 ANP 2.7.11.24 GO:0000165 ... P53778 10508788
    7315 1cma:A (2.8) BS01 dna ? GO:0003700 ... P0A8U6 1406951
    7316 1cma:A (2.8) BS02 SAM ? GO:0003700 ... P0A8U6 1406951
    7317 1cma:A (2.8) BS03 SAM ? GO:0003700 ... P0A8U6 1406951
    7318 1cma:B (2.8) BS01 dna ? GO:0003700 ... P0A8U6 1406951
    7319 1cma:B (2.8) BS02 SAM ? GO:0003700 ... P0A8U6 1406951
    7320 1cma:B (2.8) BS03 SAM ? GO:0003700 ... P0A8U6 1406951
    7321 1cmc:A (1.8) BS01 MG ? GO:0003700 ... P0A8U6 2677753
    7322 1cmc:A (1.8) BS02 SAM ? GO:0003700 ... P0A8U6 2677753
    7323 1cmc:A (1.8) BS03 SAM ? GO:0003700 ... P0A8U6 2677753
    7324 1cmc:B (1.8) BS01 SAM ? GO:0003700 ... P0A8U6 2677753
    7325 1cmc:B (1.8) BS02 MG ? GO:0003700 ... P0A8U6 2677753
    7326 1cmc:B (1.8) BS03 SAM ? GO:0003700 ... P0A8U6 2677753
    7327 1cmi:A (2.5) BS01 peptide ? GO:0000776 ... P63167 10426949
    7328 1cmi:B (2.5) BS01 peptide ? GO:0000776 ... P63167 10426949
    7329 1cmj:A (1.7) BS01 HEM 1.7.1.14 GO:0004497 ... P23295 10671516
    7330 1cmk:E (2.9) BS01 peptide 2.7.11.11 GO:0001669 ... P36887 8251932
    7331 1cmk:E (2.9) BS02 MYR 2.7.11.11 GO:0001669 ... P36887 8251932
    7332 1cml:A (1.69) BS01 MLC 2.3.1.74 GO:0009058 ... P30074 10426957
    7333 1cml:A (1.69) BS02 PIN 2.3.1.74 GO:0009058 ... P30074 10426957
    7334 1cmn:A (1.7) BS01 HEM 1.7.1.14 GO:0004497 ... P23295 10671516
    7335 1cmp:A (1.9) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 8142383
    7336 1cmq:A (2.3) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 8142383
    7337 1cmt:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 8528082
    7338 1cmu:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 8528082
    7339 1cmx:C (2.25) BS01 peptide 3.4.19.12 GO:0004843 ... P35127 10406793
    7340 1cmy:A (3.0) BS01 HEM ? GO:0004601 ... P69905 1896430
    7341 1cmy:B (3.0) BS01 HEM ? GO:0004601 ... P68871 1896430
    7342 1cmy:C (3.0) BS01 HEM ? GO:0004601 ... P69905 1896430
    7343 1cmy:D (3.0) BS01 HEM ? GO:0004601 ... P68871 1896430
    7344 1cn3:A (2.2) BS01 peptide ? GO:0005198 ... P49302 9628860
    7345 1cn3:B (2.2) BS01 peptide ? GO:0005198 ... P49302 9628860
    7346 1cn3:D (2.2) BS01 peptide ? GO:0005198 ... P49302 9628860
    7347 1cn3:E (2.2) BS01 peptide ? GO:0005198 ... P49302 9628860
    7348 1cnb:A (2.35) BS01 BME 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 7803386
    7349 1cnc:A (2.2) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 7803386
    7350 1cne:A (3.0) BS01 FAD 1.7.1.1 GO:0016491 ... P17571 7760334
    7351 1cnf:A (2.7) BS01 FAD 1.7.1.1 GO:0016491 ... P17571 7760334
    7352 1cnf:A (2.7) BS02 ADP 1.7.1.1 GO:0016491 ... P17571 7760334
    7353 1cng:A (1.9) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 N/A
    7354 1cnh:A (2.05) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 N/A
    7355 1cni:A (1.8) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 N/A
    7356 1cnj:A (1.8) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 N/A
    7357 1cnk:A (2.15) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 N/A
    7358 1cnm:A (2.2) BS01 CA 3.4.21.64 GO:0004252 ... P06873 10737944
    7359 1cnm:A (2.2) BS02 CA 3.4.21.64 GO:0004252 ... P06873 10737944
    7360 1cno:A (2.2) BS01 HEC ? GO:0009055 ... P82903 10369779
    7361 1cno:B (2.2) BS01 HEC ? GO:0009055 ... P82903 10369779
    7362 1cno:C (2.2) BS01 HEC ? GO:0009055 ... P82903 10369779
    7363 1cno:D (2.2) BS01 HEC ? GO:0009055 ... P82903 10369779
    7364 1cno:E (2.2) BS01 HEC ? GO:0009055 ... P82903 10369779
    7365 1cno:F (2.2) BS01 HEC ? GO:0009055 ... P82903 10369779
    7366 1cno:G (2.2) BS01 HEC ? GO:0009055 ... P82903 10369779
    7367 1cno:G (2.2) BS02 HEC ? GO:0009055 ... P82903 10369779
    7368 1cno:H (2.2) BS01 HEC ? GO:0009055 ... P82903 10369779
    7369 1cnq:A (2.27) BS01 F6P 3.1.3.11 GO:0000122 ... P00636 9708979
    7370 1cnq:A (2.27) BS02 F6P 3.1.3.11 GO:0000122 ... P00636 9708979
    7371 1cnq:A (2.27) BS03 ZN 3.1.3.11 GO:0000122 ... P00636 9708979
    7372 1cnq:A (2.27) BS04 ZN 3.1.3.11 GO:0000122 ... P00636 9708979
    7373 1cnq:A (2.27) BS05 ZN 3.1.3.11 GO:0000122 ... P00636 9708979
    7374 1cnq:A (2.27) BS06 PO4 3.1.3.11 GO:0000122 ... P00636 9708979
    7375 1cnw:A (2.0) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 7608893
    7376 1cnw:A (2.0) BS02 EG1 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 7608893 MOAD: Kd=19nM
    7377 1cnx:A (1.9) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 7608893
    7378 1cnx:A (1.9) BS02 EG2 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 7608893 MOAD: Kd=43nM
    7379 1cny:A (2.3) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 7608893
    7380 1cny:A (2.3) BS02 EG3 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 7608893 MOAD: Kd=14nM
    7381 1cnz:A (1.76) BS01 MN 1.1.1.85 GO:0000287 ... P37412 9086278
    7382 1cnz:B (1.76) BS01 MN 1.1.1.85 GO:0000287 ... P37412 9086278
    7383 1co0:A (-1.00) BS01 dna ? GO:0003676 ... P0A881 N/A
    7384 1co0:A (-1.00) BS02 dna ? GO:0003676 ... P0A881 N/A
    7385 1co0:A (-1.00) BS03 TRP ? GO:0003676 ... P0A881 N/A
    7386 1co0:A (-1.00) BS04 TRP ? GO:0003676 ... P0A881 N/A
    7387 1co0:B (-1.00) BS01 dna ? GO:0003676 ... P0A881 N/A
    7388 1co0:B (-1.00) BS02 dna ? GO:0003676 ... P0A881 N/A
    7389 1co0:B (-1.00) BS03 TRP ? GO:0003676 ... P0A881 N/A
    7390 1co0:B (-1.00) BS04 TRP ? GO:0003676 ... P0A881 N/A
    7391 1co4:A (-1.00) BS01 ZN ? GO:0003677 ... P41772 9665167
    7392 1co6:A (1.6) BS01 HEC ? GO:0009055 ... P00083 7674304
    7393 1co7:E (1.9) BS01 CA 3.4.21.4 GO:0004252 ... P00763 N/A
    7394 1co8:A (1.8) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 11084036
    7395 1co9:A (1.6) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 11084036
    7396 1cob:A (2.0) BS01 CU 1.15.1.1 GO:0000209 ... P00442 1619651
    7397 1cob:A (2.0) BS02 CO 1.15.1.1 GO:0000209 ... P00442 1619651
    7398 1cob:B (2.0) BS01 CU 1.15.1.1 GO:0000209 ... P00442 1619651
    7399 1cob:B (2.0) BS02 CO 1.15.1.1 GO:0000209 ... P00442 1619651
    7400 1coh:A (2.9) BS01 HEM ? GO:0004601 ... P69905 2738915

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).