SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    753001 7yfh:B (3.0) BS02 IWB ? GO:0005216 ... Q00961 36959261
    753002 7yfh:C (3.0) BS01 GLY ? GO:0005216 ... P35439 36959261
    753003 7yfh:D (3.0) BS01 GLU ? GO:0005216 ... Q00961 36959261
    753004 7yfi:A (3.3) BS01 GLY ? GO:0005216 ... P35439 36959261
    753005 7yfi:B (3.3) BS01 GLU ? GO:0005216 ... G3V9C5 36959261
    753006 7yfi:C (3.3) BS01 GLY ? GO:0005216 ... P35439 36959261
    753007 7yfi:D (3.3) BS01 GLU ? GO:0005216 ... Q00961 36959261
    753008 7yfk:A (2.1) BS01 G3L 2.3.1.48 GO:0003677 ... O75469
    Q15788
    37291126
    753009 7yfk:B (2.1) BS01 G3L 2.3.1.48 GO:0003677 ... O75469
    Q15788
    37291126
    753010 7yfl:A (3.9) BS01 GLY ? GO:0015276 ... Q05586 36959261
    753011 7yfl:B (3.9) BS01 GLU ? GO:0005216 ... O15399 36959261
    753012 7yfl:C (3.9) BS01 GLY ? GO:0015276 ... Q05586 36959261
    753013 7yfl:D (3.9) BS01 GLU ? GO:0005216 ... O15399 36959261
    753014 7yfn:B (3.8) BS01 ATP ? GO:0000785 ... P80428 36417436
    753015 7yfp:B (4.0) BS01 ATP ? GO:0000785 ... P80428 36417436
    753016 7yfq:A (3.2) BS01 rna ? GO:0003676 ... D5MRY8 38658622
    753017 7yfq:A (3.2) BS02 rna ? GO:0003676 ... D5MRY8 38658622
    753018 7yfq:A (3.2) BS03 MG ? GO:0003676 ... D5MRY8 38658622
    753019 7yfq:A (3.2) BS04 MG ? GO:0003676 ... D5MRY8 38658622
    753020 7yfr:A (5.1) BS01 GLY ? GO:0015276 ... Q05586 36959261
    753021 7yfr:B (5.1) BS01 GLU ? GO:0005216 ... O15399 36959261
    753022 7yfr:C (5.1) BS01 GLY ? GO:0015276 ... Q05586 36959261
    753023 7yfr:D (5.1) BS01 GLU ? GO:0005216 ... O15399 36959261
    753024 7yft:A (2.0) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 36417593
    753025 7yft:A (2.0) BS02 16N 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 36417593
    753026 7yft:A (2.0) BS03 IRV 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 36417593
    753027 7yft:B (2.0) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 36417593
    753028 7yft:B (2.0) BS02 16N 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 36417593
    753029 7yft:B (2.0) BS03 IRV 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 36417593
    753030 7yfx:A (3.4) BS01 rna 3.1.26.- GO:0003676 ... Q8TC59 38658622
    753031 7yfx:A (3.4) BS02 MG 3.1.26.- GO:0003676 ... Q8TC59 38658622
    753032 7yfx:A (3.4) BS03 MG 3.1.26.- GO:0003676 ... Q8TC59 38658622
    753033 7yfy:A (3.4) BS01 rna 3.1.26.- GO:0003676 ... Q8CDG1 38658622
    753034 7yfy:A (3.4) BS02 rna 3.1.26.- GO:0003676 ... Q8CDG1 38658622
    753035 7yfy:A (3.4) BS03 MG 3.1.26.- GO:0003676 ... Q8CDG1 38658622
    753036 7yfy:A (3.4) BS04 MG 3.1.26.- GO:0003676 ... Q8CDG1 38658622
    753037 7yg3:A (1.5) BS01 peptide ? N/A F4NBP7 35964029
    753038 7yg5:A (3.0) BS01 Y01 ? GO:0005216 ... Q15878 38901222
    753039 7yg5:A (3.0) BS02 Y01 ? GO:0005216 ... Q15878 38901222
    753040 7yg5:A (3.0) BS03 Y01 ? GO:0005216 ... Q15878 38901222
    753041 7yg5:A (3.0) BS04 Y01 ? GO:0005216 ... Q15878 38901222
    753042 7yg5:A (3.0) BS05 Y01 ? GO:0005216 ... Q15878 38901222
    753043 7yg5:A (3.0) BS06 Y01 ? GO:0005216 ... Q15878 38901222
    753044 7yg5:A (3.0) BS07 Y01 ? GO:0005216 ... Q15878 38901222
    753045 7yg5:A (3.0) BS08 Y01 ? GO:0005216 ... Q15878 38901222
    753046 7yg5:A (3.0) BS09 CA ? GO:0005216 ... Q15878 38901222
    753047 7yg5:A (3.0) BS10 TOR ? GO:0005216 ... Q15878 38901222
    753048 7yg5:A (3.0) BS11 Y01 ? GO:0005216 ... Q15878 38901222
    753049 7yg5:D (3.0) BS01 CA ? N/A P54289 38901222
    753050 7yg6:A (3.2) BS01 rna ? GO:0003676 ... D5MRY8 38658622
    753051 7yg6:A (3.2) BS02 MG ? GO:0003676 ... D5MRY8 38658622
    753052 7yg6:A (3.2) BS03 MG ? GO:0003676 ... D5MRY8 38658622
    753053 7yg7:A (3.7) BS01 rna ? GO:0003723 ... Q91DS3 36943056
    753054 7yg7:B (3.7) BS01 rna ? GO:0003723 ... Q91DS3 36943056
    753055 7yg7:C (3.7) BS01 rna ? GO:0003723 ... Q91DS3 36943056
    753056 7yg7:D (3.7) BS01 rna ? GO:0003723 ... Q91DS3 36943056
    753057 7yg7:E (3.7) BS01 rna ? GO:0003723 ... Q91DS3 36943056
    753058 7yg7:F (3.7) BS01 rna ? GO:0003723 ... Q91DS3 36943056
    753059 7yg7:G (3.7) BS01 rna ? GO:0003723 ... Q91DS3 36943056
    753060 7yg7:H (3.7) BS01 rna ? GO:0003723 ... Q91DS3 36943056
    753061 7yg7:I (3.7) BS01 rna ? GO:0003723 ... Q91DS3 36943056
    753062 7yg7:J (3.7) BS01 rna ? GO:0003723 ... Q91DS3 36943056
    753063 7yg7:K (3.7) BS01 rna ? GO:0003723 ... Q91DS3 36943056
    753064 7ygf:A (2.08) BS01 SO4 ? GO:0005737 ... Q8RFW9 35897955
    753065 7ygf:B (2.08) BS01 SO4 ? GO:0005737 ... Q8RFW9 35897955
    753066 7ygf:C (2.08) BS01 SO4 ? GO:0005737 ... Q8RFW9 35897955
    753067 7ygh:A (3.11) BS01 rna 4.6.1.- GO:0005737 ... Q7LYJ6 36807980
    753068 7ygh:B (3.11) BS01 rna 4.6.1.- GO:0005737 ... Q7LYJ6 36807980
    753069 7ygi:A (2.1) BS01 ZN ? GO:0000976 ... P04637 36650277
    753070 7ygi:B (2.1) BS01 ZN ? GO:0000976 ... P04637 36650277
    753071 7ygl:A (2.5) BS01 rna 4.6.1.- GO:0005737 ... Q7LYJ6 36807980
    753072 7ygl:B (2.5) BS01 rna 4.6.1.- GO:0005737 ... Q7LYJ6 36807980
    753073 7ygn:A (3.0) BS01 rna 3.1.26.- GO:0003676 ... Q8CDG1 38658622
    753074 7ygn:A (3.0) BS02 MG 3.1.26.- GO:0003676 ... Q8CDG1 38658622
    753075 7ygq:A (2.04) BS01 HUR 2.7.7.50
    3.4.19.12
    3.4.22.-
    3.4.22.69
    GO:0008233 ... P0C6U8 36146880
    753076 7ygq:B (2.04) BS01 HUR 2.7.7.50
    3.4.19.12
    3.4.22.-
    3.4.22.69
    GO:0008233 ... P0C6U8 36146880
    753077 7ygv:A (2.8) BS01 CA ? GO:0005509 ... Q9D4J1 36862489
    753078 7ygv:A (2.8) BS02 CA ? GO:0005509 ... Q9D4J1 36862489
    753079 7ygv:A (2.8) BS03 ZN ? GO:0005509 ... Q9D4J1 36862489
    753080 7ygw:A (1.72) BS01 ZN ? GO:0005509 ... Q9D4J1 36862489
    753081 7ygw:A (1.72) BS02 ZN ? GO:0005509 ... Q9D4J1 36862489
    753082 7ygw:A (1.72) BS03 ZN ? GO:0005509 ... Q9D4J1 36862489
    753083 7ygy:A (2.6) BS01 ZN ? GO:0005509 ... Q96C19 36862489
    753084 7ygy:A (2.6) BS02 ZN ? GO:0005509 ... Q96C19 36862489
    753085 7ygy:A (2.6) BS03 ZN ? GO:0005509 ... Q96C19 36862489
    753086 7yh2:A (1.91) BS01 ZN ? GO:0046872 ... A0A1Q9P883 38472392
    753087 7yh2:B (1.91) BS01 ZN ? GO:0046872 ... A0A1Q9P883 38472392
    753088 7yh3:A (1.7) BS01 ZN ? GO:0046872 ... A0A135VRB8 38472392
    753089 7yh3:B (1.7) BS01 ZN ? GO:0046872 ... A0A135VRB8 38472392
    753090 7yh3:C (1.7) BS01 ZN ? GO:0046872 ... A0A135VRB8 38472392
    753091 7yh3:D (1.7) BS01 ZN ? GO:0046872 ... A0A135VRB8 38472392
    753092 7yh4:A (2.03) BS01 ZN 3.4.13.4 GO:0004180 ... Q8IYS1 N/A
    753093 7yh4:A (2.03) BS02 ZN 3.4.13.4 GO:0004180 ... Q8IYS1 N/A
    753094 7yh5:A (2.7) BS01 MG 3.6.1.8 N/A P96379 36937295
    753095 7yh5:B (2.7) BS01 MG 3.6.1.8 N/A P96379 36937295
    753096 7yh5:C (2.7) BS01 MG 3.6.1.8 N/A P96379 36937295
    753097 7yh5:E (2.7) BS01 MG 3.6.1.8 N/A P96379 36937295
    753098 7yh5:F (2.7) BS01 MG 3.6.1.8 N/A P96379 36937295
    753099 7yh8:A (2.2) BS01 peptide N/A N/A N/A N/A
    753100 7yh8:C (2.2) BS01 peptide N/A N/A N/A N/A
    753101 7yh9:A (2.39) BS01 ZN 3.5.2.6 GO:0008270 ... Q79MP6 37209449
    753102 7yh9:A (2.39) BS02 ZN 3.5.2.6 GO:0008270 ... Q79MP6 37209449
    753103 7yh9:A (2.39) BS03 IT0 3.5.2.6 GO:0008270 ... Q79MP6 37209449
    753104 7yh9:A (2.39) BS04 IT0 3.5.2.6 GO:0008270 ... Q79MP6 37209449
    753105 7yh9:B (2.39) BS01 ZN 3.5.2.6 GO:0008270 ... Q79MP6 37209449
    753106 7yh9:B (2.39) BS02 ZN 3.5.2.6 GO:0008270 ... Q79MP6 37209449
    753107 7yh9:B (2.39) BS03 IT0 3.5.2.6 GO:0008270 ... Q79MP6 37209449
    753108 7yh9:C (2.39) BS01 ZN 3.5.2.6 GO:0008270 ... Q79MP6 37209449
    753109 7yh9:C (2.39) BS02 ZN 3.5.2.6 GO:0008270 ... Q79MP6 37209449
    753110 7yh9:C (2.39) BS03 IT0 3.5.2.6 GO:0008270 ... Q79MP6 37209449
    753111 7yh9:D (2.39) BS01 ZN 3.5.2.6 GO:0008270 ... Q79MP6 37209449
    753112 7yh9:D (2.39) BS02 ZN 3.5.2.6 GO:0008270 ... Q79MP6 37209449
    753113 7yh9:D (2.39) BS03 IT0 3.5.2.6 GO:0008270 ... Q79MP6 37209449
    753114 7yh9:E (2.39) BS01 ZN 3.5.2.6 GO:0008270 ... Q79MP6 37209449
    753115 7yh9:E (2.39) BS02 ZN 3.5.2.6 GO:0008270 ... Q79MP6 37209449
    753116 7yh9:E (2.39) BS03 IT0 3.5.2.6 GO:0008270 ... Q79MP6 37209449
    753117 7yh9:F (2.39) BS01 IT0 3.5.2.6 GO:0008270 ... Q79MP6 37209449
    753118 7yh9:F (2.39) BS02 ZN 3.5.2.6 GO:0008270 ... Q79MP6 37209449
    753119 7yh9:F (2.39) BS03 ZN 3.5.2.6 GO:0008270 ... Q79MP6 37209449
    753120 7yh9:F (2.39) BS04 IT0 3.5.2.6 GO:0008270 ... Q79MP6 37209449
    753121 7yha:A (2.135) BS01 ZN 3.5.2.6 GO:0008270 ... Q79MP6 37209449
    753122 7yha:A (2.135) BS02 ZN 3.5.2.6 GO:0008270 ... Q79MP6 37209449
    753123 7yha:A (2.135) BS03 ITK 3.5.2.6 GO:0008270 ... Q79MP6 37209449
    753124 7yha:A (2.135) BS04 ITK 3.5.2.6 GO:0008270 ... Q79MP6 37209449
    753125 7yha:B (2.135) BS01 ZN 3.5.2.6 GO:0008270 ... Q79MP6 37209449
    753126 7yha:B (2.135) BS02 ZN 3.5.2.6 GO:0008270 ... Q79MP6 37209449
    753127 7yha:B (2.135) BS03 ITK 3.5.2.6 GO:0008270 ... Q79MP6 37209449
    753128 7yha:B (2.135) BS04 ITK 3.5.2.6 GO:0008270 ... Q79MP6 37209449
    753129 7yha:C (2.135) BS01 ZN 3.5.2.6 GO:0008270 ... Q79MP6 37209449
    753130 7yha:C (2.135) BS02 ZN 3.5.2.6 GO:0008270 ... Q79MP6 37209449
    753131 7yha:C (2.135) BS03 ITK 3.5.2.6 GO:0008270 ... Q79MP6 37209449
    753132 7yha:C (2.135) BS04 ITK 3.5.2.6 GO:0008270 ... Q79MP6 37209449
    753133 7yha:D (2.135) BS01 ZN 3.5.2.6 GO:0008270 ... Q79MP6 37209449
    753134 7yha:D (2.135) BS02 ZN 3.5.2.6 GO:0008270 ... Q79MP6 37209449
    753135 7yha:D (2.135) BS03 ITK 3.5.2.6 GO:0008270 ... Q79MP6 37209449
    753136 7yha:D (2.135) BS04 ITK 3.5.2.6 GO:0008270 ... Q79MP6 37209449
    753137 7yhb:A (1.43) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 37209449
    753138 7yhb:A (1.43) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 37209449
    753139 7yhb:A (1.43) BS03 ITV 3.5.2.6 GO:0016787 ... Q9K2N0 37209449
    753140 7yhb:B (1.43) BS01 ITV 3.5.2.6 GO:0016787 ... Q9K2N0 37209449
    753141 7yhb:B (1.43) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 37209449
    753142 7yhb:B (1.43) BS03 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 37209449
    753143 7yhb:B (1.43) BS04 ITV 3.5.2.6 GO:0016787 ... Q9K2N0 37209449
    753144 7yhc:A (2.153) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 37209449
    753145 7yhc:A (2.153) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 37209449
    753146 7yhc:A (2.153) BS03 IU3 3.5.2.6 GO:0016787 ... Q9K2N0 37209449
    753147 7yhc:B (2.153) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 37209449
    753148 7yhc:B (2.153) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 37209449
    753149 7yhc:B (2.153) BS03 IU3 3.5.2.6 GO:0016787 ... Q9K2N0 37209449
    753150 7yhc:C (2.153) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 37209449
    753151 7yhc:C (2.153) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 37209449
    753152 7yhc:C (2.153) BS03 IU3 3.5.2.6 GO:0016787 ... Q9K2N0 37209449
    753153 7yhc:D (2.153) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 37209449
    753154 7yhc:D (2.153) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 37209449
    753155 7yhc:D (2.153) BS03 IU3 3.5.2.6 GO:0016787 ... Q9K2N0 37209449
    753156 7yhc:E (2.153) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 37209449
    753157 7yhc:E (2.153) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 37209449
    753158 7yhc:E (2.153) BS03 IU3 3.5.2.6 GO:0016787 ... Q9K2N0 37209449
    753159 7yhc:F (2.153) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 37209449
    753160 7yhc:F (2.153) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 37209449
    753161 7yhc:F (2.153) BS03 IU3 3.5.2.6 GO:0016787 ... Q9K2N0 37209449
    753162 7yhc:G (2.153) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 37209449
    753163 7yhc:G (2.153) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 37209449
    753164 7yhc:G (2.153) BS03 IU3 3.5.2.6 GO:0016787 ... Q9K2N0 37209449
    753165 7yhc:H (2.153) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 37209449
    753166 7yhc:H (2.153) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 37209449
    753167 7yhc:H (2.153) BS03 IU3 3.5.2.6 GO:0016787 ... Q9K2N0 37209449
    753168 7yhd:A (1.696) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 37209449
    753169 7yhd:A (1.696) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 37209449
    753170 7yhd:A (1.696) BS03 IU7 3.5.2.6 GO:0016787 ... Q9K2N0 37209449
    753171 7yhe:A (1.67) BS01 AKG ? GO:0005506 ... A6YEH4 36176888
    753172 7yhe:A (1.67) BS02 FE ? GO:0005506 ... A6YEH4 36176888
    753173 7yhe:B (1.67) BS01 AKG ? GO:0005506 ... A6YEH4 36176888
    753174 7yhg:A (-1.00) BS01 MAN 3.2.1.91 GO:0005576 ... P62694 37666405
    753175 7yhh:A (-1.00) BS01 MAN 3.2.1.91 GO:0005576 ... P62694 37666405
    753176 7yhi:A (-1.00) BS01 MAN 3.2.1.91 GO:0005576 ... P62694 37666405
    753177 7yhl:A (2.7) BS01 PO4 4.6.1.- GO:0005737 ... Q7LYJ6 36807980
    753178 7yhl:B (2.7) BS01 PO4 4.6.1.- GO:0005737 ... Q7LYJ6 36807980
    753179 7yhn:A (2.6) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 36511661
    753180 7yhn:A (2.6) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 36511661
    753181 7yhn:A (2.6) BS03 IUK 3.6.5.- GO:0000226 ... Q2XVP4 36511661
    753182 7yhn:B (2.6) BS01 GDP ? GO:0000226 ... P02554 36511661
    753183 7yhn:B (2.6) BS02 IUK ? GO:0000226 ... P02554 36511661
    753184 7yhn:C (2.6) BS01 MG 3.6.5.- GO:0000226 ... Q2XVP4 36511661
    753185 7yhn:C (2.6) BS02 GTP 3.6.5.- GO:0000226 ... Q2XVP4 36511661
    753186 7yhn:C (2.6) BS03 MG 3.6.5.- GO:0000226 ... Q2XVP4 36511661
    753187 7yhn:D (2.6) BS01 GTP ? GO:0000226 ... P02554 36511661
    753188 7yhn:D (2.6) BS02 IUK ? GO:0000226 ... P02554 36511661
    753189 7yho:A (3.3) BS01 dna 4.2.99.18 GO:0003824 ... Q05066
    Q9SJQ6
    36624257
    753190 7yho:A (3.3) BS02 dna 4.2.99.18 GO:0003824 ... Q05066
    Q9SJQ6
    36624257
    753191 7yho:A (3.3) BS03 SF4 4.2.99.18 GO:0003824 ... Q05066
    Q9SJQ6
    36624257
    753192 7yhp:A (3.1) BS01 dna 4.2.99.18 GO:0003824 ... Q05066
    Q9SJQ6
    36624257
    753193 7yhp:A (3.1) BS02 dna 4.2.99.18 GO:0003824 ... Q05066
    Q9SJQ6
    36624257
    753194 7yhp:A (3.1) BS03 SF4 4.2.99.18 GO:0003824 ... Q05066
    Q9SJQ6
    36624257
    753195 7yhq:A (3.9) BS01 dna 4.2.99.18 GO:0003824 ... Q05066
    Q9SJQ6
    36624257
    753196 7yhq:A (3.9) BS02 dna 4.2.99.18 GO:0003824 ... Q05066
    Q9SJQ6
    36624257
    753197 7yhq:A (3.9) BS03 SF4 4.2.99.18 GO:0003824 ... Q05066
    Q9SJQ6
    36624257
    753198 7yhs:A (3.37) BS01 rna ? N/A A0A3A8DDU9 36209819
    753199 7yhs:A (3.37) BS02 dna ? N/A A0A3A8DDU9 36209819
    753200 7yhs:C (3.37) BS01 rna N/A N/A N/A 36209819

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).