SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 3985 3986 3987 3988 3989 3990 3991 3992 3993 3994 3995 3996 3997 3998 3999 4000 4001 4002 4003 4004 4005 > >>
    Go to page

    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    798801 8ekb:2i (2.7) BS01 rna ? GO:0003723 ... P80374 36546783
    798802 8ekb:2i (2.7) BS02 rna ? GO:0003723 ... P80374 36546783
    798803 8ekb:2j (2.7) BS01 rna ? GO:0000049 ... Q5SHN7 36546783
    798804 8ekb:2k (2.7) BS01 rna ? GO:0003735 ... P80376 36546783
    798805 8ekb:2k (2.7) BS02 MG ? GO:0003735 ... P80376 36546783
    798806 8ekb:2l (2.7) BS01 rna ? GO:0000049 ... Q5SHN3 36546783
    798807 8ekb:2l (2.7) BS02 MG ? GO:0000049 ... Q5SHN3 36546783
    798808 8ekb:2m (2.7) BS01 rna ? GO:0000049 ... P80377 36546783
    798809 8ekb:2m (2.7) BS02 rna ? GO:0000049 ... P80377 36546783
    798810 8ekb:2n (2.7) BS01 rna ? GO:0003735 ... P0DOY6 36546783
    798811 8ekb:2n (2.7) BS02 ZN ? GO:0003735 ... P0DOY6 36546783
    798812 8ekb:2o (2.7) BS01 rna ? GO:0003735 ... Q5SJ76 36546783
    798813 8ekb:2o (2.7) BS02 rna ? GO:0003735 ... Q5SJ76 36546783
    798814 8ekb:2p (2.7) BS01 rna ? GO:0003735 ... Q5SJH3 36546783
    798815 8ekb:2q (2.7) BS01 rna ? GO:0003735 ... P0DOY7 36546783
    798816 8ekb:2q (2.7) BS02 MG ? GO:0003735 ... P0DOY7 36546783
    798817 8ekb:2r (2.7) BS01 rna ? GO:0003735 ... Q5SLQ0 36546783
    798818 8ekb:2s (2.7) BS01 rna ? GO:0000028 ... Q5SHP2 36546783
    798819 8ekb:2t (2.7) BS01 rna ? GO:0003723 ... P80380 36546783
    798820 8ekc:1 (2.7) BS01 rna ? GO:0000027 ... P0A7M6 36546783
    798821 8ekc:2 (2.7) BS01 rna ? GO:0000027 ... P0AG51 36546783
    798822 8ekc:3 (2.7) BS01 rna ? GO:0002181 ... P0A7M9 36546783
    798823 8ekc:3 (2.7) BS02 ZN ? GO:0002181 ... P0A7M9 36546783
    798824 8ekc:4 (2.7) BS01 rna ? GO:0000027 ... P0A7N4 36546783
    798825 8ekc:5 (2.7) BS01 rna ? GO:0000027 ... P0A7N9 36546783
    798826 8ekc:6 (2.7) BS01 rna ? GO:0002181 ... P0A7P5 36546783
    798827 8ekc:7 (2.7) BS01 rna ? GO:0002181 ... P0A7Q1 36546783
    798828 8ekc:8 (2.7) BS01 rna ? GO:0002181 ... P0A7Q6 36546783
    798829 8ekc:8 (2.7) BS02 ZN ? GO:0002181 ... P0A7Q6 36546783
    798830 8ekc:C (2.7) BS01 rna ? GO:0000027 ... P60422 36546783
    798831 8ekc:C (2.7) BS02 MG ? GO:0000027 ... P60422 36546783
    798832 8ekc:D (2.7) BS01 rna ? GO:0000027 ... P60438 36546783
    798833 8ekc:D (2.7) BS02 MG ? GO:0000027 ... P60438 36546783
    798834 8ekc:E (2.7) BS01 rna ? GO:0001070 ... P60723 36546783
    798835 8ekc:F (2.7) BS01 rna ? GO:0000027 ... P62399 36546783
    798836 8ekc:F (2.7) BS02 rna ? GO:0000027 ... P62399 36546783
    798837 8ekc:G (2.7) BS01 rna ? GO:0000027 ... P0AG55 36546783
    798838 8ekc:H (2.7) BS01 rna ? GO:0002181 ... P0A7R1 36546783
    798839 8ekc:L (2.7) BS01 rna ? GO:0002181 ... P0AA10 36546783
    798840 8ekc:M (2.7) BS01 rna ? GO:0002181 ... P0ADY3 36546783
    798841 8ekc:M (2.7) BS02 rna ? GO:0002181 ... P0ADY3 36546783
    798842 8ekc:N (2.7) BS01 rna ? GO:0002181 ... P02413 36546783
    798843 8ekc:O (2.7) BS01 rna ? GO:0000027 ... P0ADY7 36546783
    798844 8ekc:O (2.7) BS02 rna ? GO:0000027 ... P0ADY7 36546783
    798845 8ekc:P (2.7) BS01 rna ? GO:0000027 ... P0AG44 36546783
    798846 8ekc:Q (2.7) BS01 rna ? GO:0002181 ... P0C018 36546783
    798847 8ekc:Q (2.7) BS02 rna ? GO:0002181 ... P0C018 36546783
    798848 8ekc:R (2.7) BS01 rna ? GO:0000027 ... P0A7K6 36546783
    798849 8ekc:R (2.7) BS02 rna ? GO:0000027 ... P0A7K6 36546783
    798850 8ekc:S (2.7) BS01 rna ? GO:0000027 ... P0A7L3 36546783
    798851 8ekc:T (2.7) BS01 rna ? GO:0002181 ... P0AG48 36546783
    798852 8ekc:U (2.7) BS01 rna ? GO:0002181 ... P61175 36546783
    798853 8ekc:V (2.7) BS01 rna ? GO:0000027 ... P0ADZ0 36546783
    798854 8ekc:W (2.7) BS01 rna ? GO:0000027 ... P60624 36546783
    798855 8ekc:X (2.7) BS01 rna ? GO:0000027 ... P68919 36546783
    798856 8ekc:Y (2.7) BS01 rna ? GO:0000027 ... P0A7L8 36546783
    798857 8ekc:Z (2.7) BS01 rna ? GO:0000027 ... P0A7M2 36546783
    798858 8ekc:b (2.7) BS01 rna ? GO:0000028 ... P0A7V0 36546783
    798859 8ekc:c (2.7) BS01 rna ? GO:0000028 ... P0A7V3 36546783
    798860 8ekc:d (2.7) BS01 rna ? GO:0000028 ... P0A7V8 36546783
    798861 8ekc:e (2.7) BS01 rna ? GO:0000028 ... P0A7W1 36546783
    798862 8ekc:f (2.7) BS01 rna ? GO:0002181 ... P02358 36546783
    798863 8ekc:g (2.7) BS01 rna ? GO:0003723 ... P02359 36546783
    798864 8ekc:h (2.7) BS01 rna ? GO:0000028 ... P0A7W7 36546783
    798865 8ekc:i (2.7) BS01 rna ? GO:0002181 ... P0A7X3 36546783
    798866 8ekc:i (2.7) BS02 rna ? GO:0002181 ... P0A7X3 36546783
    798867 8ekc:j (2.7) BS01 rna ? GO:0000049 ... P0A7R5 36546783
    798868 8ekc:k (2.7) BS01 rna ? GO:0002181 ... P0A7R9 36546783
    798869 8ekc:l (2.7) BS01 rna ? GO:0000049 ... P0A7S3 36546783
    798870 8ekc:m (2.7) BS01 rna ? GO:0000049 ... P0A7S9 36546783
    798871 8ekc:m (2.7) BS02 rna ? GO:0000049 ... P0A7S9 36546783
    798872 8ekc:n (2.7) BS01 rna ? GO:0000028 ... P0AG59 36546783
    798873 8ekc:o (2.7) BS01 rna ? GO:0000028 ... P0ADZ4 36546783
    798874 8ekc:o (2.7) BS02 rna ? GO:0000028 ... P0ADZ4 36546783
    798875 8ekc:p (2.7) BS01 rna ? GO:0000028 ... P0A7T3 36546783
    798876 8ekc:q (2.7) BS01 rna ? GO:0000028 ... P0AG63 36546783
    798877 8ekc:r (2.7) BS01 rna ? GO:0002181 ... P0A7T7 36546783
    798878 8ekc:s (2.7) BS01 rna ? GO:0002181 ... P0A7U3 36546783
    798879 8ekc:t (2.7) BS01 rna ? GO:0000028 ... P0A7U7 36546783
    798880 8ekc:u (2.7) BS01 rna ? GO:0000028 ... P68679 36546783
    798881 8ekf:HHH (1.9) BS01 peptide N/A N/A N/A 37507365
    798882 8ekf:LLL (1.9) BS01 peptide N/A N/A N/A 37507365
    798883 8ekg:A (2.65) BS01 CA 3.1.1.102 GO:0009279 ... A0A0K8P8E7 38885634
    798884 8ekg:A (2.65) BS02 EDO 3.1.1.102 GO:0009279 ... A0A0K8P8E7 38885634
    798885 8ekg:B (2.65) BS01 CA 3.1.1.102 GO:0009279 ... A0A0K8P8E7 38885634
    798886 8ekg:B (2.65) BS02 EDO 3.1.1.102 GO:0009279 ... A0A0K8P8E7 38885634
    798887 8ekg:B (2.65) BS03 EDO 3.1.1.102 GO:0009279 ... A0A0K8P8E7 38885634
    798888 8ekg:B (2.65) BS04 EDO 3.1.1.102 GO:0009279 ... A0A0K8P8E7 38885634
    798889 8ekg:C (2.65) BS01 CA 3.1.1.102 GO:0009279 ... A0A0K8P8E7 38885634
    798890 8ekg:D (2.65) BS01 CA 3.1.1.102 GO:0009279 ... A0A0K8P8E7 38885634
    798891 8ekg:E (2.65) BS01 EDO 3.1.1.102 GO:0009279 ... A0A0K8P8E7 38885634
    798892 8ekg:E (2.65) BS02 CA 3.1.1.102 GO:0009279 ... A0A0K8P8E7 38885634
    798893 8ekg:F (2.65) BS01 CA 3.1.1.102 GO:0009279 ... A0A0K8P8E7 38885634
    798894 8ekj:F (1.54) BS01 dna ? GO:0003700 ... P17947 37352101
    798895 8ekj:F (1.54) BS02 dna ? GO:0003700 ... P17947 37352101
    798896 8ekk:A (3.28) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    798897 8ekk:A (3.28) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    798898 8ekk:B (3.28) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    798899 8ekk:B (3.28) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    798900 8ekk:C (3.28) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    798901 8ekk:C (3.28) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    798902 8ekk:D (3.28) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    798903 8ekk:D (3.28) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    798904 8ekk:E (3.28) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    798905 8ekk:E (3.28) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    798906 8ekk:F (3.28) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    798907 8ekk:F (3.28) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    798908 8ekk:G (3.28) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    798909 8ekk:G (3.28) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    798910 8ekl:A (3.06) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    798911 8ekl:A (3.06) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    798912 8ekl:B (3.06) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    798913 8ekl:B (3.06) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    798914 8ekl:C (3.06) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    798915 8ekl:C (3.06) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    798916 8ekl:D (3.06) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    798917 8ekl:D (3.06) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    798918 8ekl:E (3.06) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    798919 8ekl:E (3.06) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    798920 8ekl:F (3.06) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    798921 8ekl:F (3.06) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    798922 8ekl:G (3.06) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    798923 8ekl:G (3.06) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    798924 8ekm:A (3.56) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    798925 8ekm:A (3.56) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    798926 8ekm:B (3.56) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    798927 8ekm:B (3.56) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    798928 8ekm:C (3.56) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    798929 8ekm:C (3.56) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    798930 8ekm:D (3.56) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    798931 8ekm:D (3.56) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    798932 8ekm:E (3.56) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    798933 8ekm:E (3.56) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    798934 8ekm:F (3.56) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    798935 8ekm:F (3.56) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    798936 8ekm:G (3.56) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    798937 8ekm:G (3.56) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    798938 8ekn:A (2.29) BS01 WLQ 3.2.1.106 GO:0004573 ... G0SFD1 36762932
    798939 8ekn:A (2.29) BS02 WLQ 3.2.1.106 GO:0004573 ... G0SFD1 36762932
    798940 8ekn:B (2.29) BS01 WLQ 3.2.1.106 GO:0004573 ... G0SFD1 36762932
    798941 8eko:A (1.34) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 36215733
    798942 8ekt:A (2.29) BS01 HEM 1.14.13.70 GO:0004497 ... L8GJB3 38683753
    798943 8ekt:A (2.29) BS02 VT1 1.14.13.70 GO:0004497 ... L8GJB3 38683753
    798944 8ekt:B (2.29) BS01 HEM 1.14.13.70 GO:0004497 ... L8GJB3 38683753
    798945 8ekt:B (2.29) BS02 VT1 1.14.13.70 GO:0004497 ... L8GJB3 38683753
    798946 8ekt:C (2.29) BS01 HEM 1.14.13.70 GO:0004497 ... L8GJB3 38683753
    798947 8ekt:C (2.29) BS02 VT1 1.14.13.70 GO:0004497 ... L8GJB3 38683753
    798948 8ekt:D (2.29) BS01 HEM 1.14.13.70 GO:0004497 ... L8GJB3 38683753
    798949 8ekt:D (2.29) BS02 VT1 1.14.13.70 GO:0004497 ... L8GJB3 38683753
    798950 8ekt:E (2.29) BS01 HEM 1.14.13.70 GO:0004497 ... L8GJB3 38683753
    798951 8ekt:E (2.29) BS02 VT1 1.14.13.70 GO:0004497 ... L8GJB3 38683753
    798952 8ekt:F (2.29) BS01 HEM 1.14.13.70 GO:0004497 ... L8GJB3 38683753
    798953 8ekt:F (2.29) BS02 VT1 1.14.13.70 GO:0004497 ... L8GJB3 38683753
    798954 8eku:F (1.52) BS01 dna ? GO:0003700 ... P17947 37352101
    798955 8eku:F (1.52) BS02 dna ? GO:0003700 ... P17947 37352101
    798956 8ekv:F (1.62) BS01 dna ? GO:0003700 ... P17947 37352101
    798957 8ekv:F (1.62) BS02 dna ? GO:0003700 ... P17947 37352101
    798958 8ekx:A (1.55) BS01 GLC ? GO:0005515 ... P0AEX9
    Q07820
    37880389
    798959 8ekx:A (1.55) BS02 GLC ? GO:0005515 ... P0AEX9
    Q07820
    37880389
    798960 8ekx:A (1.55) BS03 OK5 ? GO:0005515 ... P0AEX9
    Q07820
    37880389
    798961 8ekz:F (1.42) BS01 dna ? GO:0003700 ... P17947 37352101
    798962 8ekz:F (1.42) BS02 dna ? GO:0003700 ... P17947 37352101
    798963 8el0:A (1.917) BS01 GLC ? GO:0005515 ... P0AEX9
    Q07820
    37880389
    798964 8el0:A (1.917) BS02 GLC ? GO:0005515 ... P0AEX9
    Q07820
    37880389
    798965 8el0:A (1.917) BS03 WLW ? GO:0005515 ... P0AEX9
    Q07820
    37880389
    798966 8el1:A (2.406) BS01 GLC ? GO:0005515 ... P0AEX9
    Q07820
    37880389
    798967 8el1:A (2.406) BS02 GLC ? GO:0005515 ... P0AEX9
    Q07820
    37880389
    798968 8el1:A (2.406) BS03 WME ? GO:0005515 ... P0AEX9
    Q07820
    37880389
    798969 8el1:B (2.406) BS01 GLC ? GO:0005515 ... P0AEX9
    Q07820
    37880389
    798970 8el1:B (2.406) BS02 GLC ? GO:0005515 ... P0AEX9
    Q07820
    37880389
    798971 8el1:B (2.406) BS03 WME ? GO:0005515 ... P0AEX9
    Q07820
    37880389
    798972 8el1:C (2.406) BS01 GLC ? GO:0005515 ... P0AEX9
    Q07820
    37880389
    798973 8el1:C (2.406) BS02 GLC ? GO:0005515 ... P0AEX9
    Q07820
    37880389
    798974 8el1:C (2.406) BS03 WME ? GO:0005515 ... P0AEX9
    Q07820
    37880389
    798975 8el1:D (2.406) BS01 GLC ? GO:0005515 ... P0AEX9
    Q07820
    37880389
    798976 8el1:D (2.406) BS02 GLC ? GO:0005515 ... P0AEX9
    Q07820
    37880389
    798977 8el1:D (2.406) BS03 WME ? GO:0005515 ... P0AEX9
    Q07820
    37880389
    798978 8el3:A (1.57) BS01 PEB ? GO:0030089 ... U5TBU5 37957226
    798979 8el3:A (1.57) BS02 AX9 ? GO:0030089 ... U5TBU5 37957226
    798980 8el3:A (1.57) BS03 PEB ? GO:0030089 ... U5TBU5 37957226
    798981 8el3:A (1.57) BS04 PEB ? GO:0030089 ... U5TBU5 37957226
    798982 8el3:A (1.57) BS05 PEB ? GO:0030089 ... U5TBU5 37957226
    798983 8el3:A (1.57) BS06 PEB ? GO:0030089 ... U5TBU5 37957226
    798984 8el3:A (1.57) BS07 PEB ? GO:0030089 ... U5TBU5 37957226
    798985 8el3:B (1.57) BS01 AX9 ? GO:0009535 ... U5T8W0 37957226
    798986 8el3:B (1.57) BS02 PEB ? GO:0009535 ... U5T8W0 37957226
    798987 8el3:B (1.57) BS03 PEB ? GO:0009535 ... U5T8W0 37957226
    798988 8el3:B (1.57) BS04 PEB ? GO:0009535 ... U5T8W0 37957226
    798989 8el3:B (1.57) BS05 PEB ? GO:0009535 ... U5T8W0 37957226
    798990 8el3:C (1.57) BS01 PEB ? GO:0030089 ... U5TBJ3 37957226
    798991 8el3:C (1.57) BS02 PEB ? GO:0030089 ... U5TBJ3 37957226
    798992 8el3:C (1.57) BS03 AX9 ? GO:0030089 ... U5TBJ3 37957226
    798993 8el3:C (1.57) BS04 PEB ? GO:0030089 ... U5TBJ3 37957226
    798994 8el3:C (1.57) BS05 PEB ? GO:0030089 ... U5TBJ3 37957226
    798995 8el3:C (1.57) BS06 PEB ? GO:0030089 ... U5TBJ3 37957226
    798996 8el3:C (1.57) BS07 PEB ? GO:0030089 ... U5TBJ3 37957226
    798997 8el3:D (1.57) BS01 AX9 ? GO:0009535 ... U5T8W0 37957226
    798998 8el3:D (1.57) BS02 PEB ? GO:0009535 ... U5T8W0 37957226
    798999 8el3:D (1.57) BS03 PEB ? GO:0009535 ... U5T8W0 37957226
    799000 8el3:E (1.57) BS01 PEB ? GO:0030089 ... U5TBJ3 37957226

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).