SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    846201 8oj3:R (3.5) BS01 rna N/A GO:0000028 ... A0A1D8PK22 N/A
    846202 8oj3:R (3.5) BS02 rna N/A GO:0000028 ... A0A1D8PK22 N/A
    846203 8oj3:S (3.5) BS01 rna N/A GO:0000462 ... A0A1D8PCW6 N/A
    846204 8oj3:T (3.5) BS01 rna N/A GO:0003735 ... A0A1D8PEY9 N/A
    846205 8oj3:T (3.5) BS02 MG N/A GO:0003735 ... A0A1D8PEY9 N/A
    846206 8oj3:U (3.5) BS01 rna N/A GO:0005737 ... A0A1D8PQQ5 N/A
    846207 8oj3:V (3.5) BS01 rna N/A GO:0000028 ... A0A1D8PK61 N/A
    846208 8oj3:W (3.5) BS01 rna N/A GO:0003735 ... Q5A389 N/A
    846209 8oj3:Y (3.5) BS01 rna N/A GO:0003735 ... Q96W54 N/A
    846210 8oj3:Y (3.5) BS02 MG N/A GO:0003735 ... Q96W54 N/A
    846211 8oj3:Z (3.5) BS01 rna N/A GO:0003735 ... A0A1D8PDU3 N/A
    846212 8oj3:a (3.5) BS01 rna N/A GO:0005737 ... Q5A7K0 N/A
    846213 8oj3:b (3.5) BS01 rna N/A GO:0003735 ... A0A1D8PNQ6 N/A
    846214 8oj3:c (3.5) BS01 rna N/A GO:0003729 ... Q5ALV6 N/A
    846215 8oj3:c (3.5) BS02 ZN N/A GO:0003729 ... Q5ALV6 N/A
    846216 8oj3:d (3.5) BS01 rna N/A GO:0000028 ... A0A1D8PTI7 N/A
    846217 8oj3:e (3.5) BS01 rna N/A GO:0000028 ... A0A1D8PQN0 N/A
    846218 8oj3:f (3.5) BS01 rna N/A GO:0002181 ... A0A1D8PTR4 N/A
    846219 8oj3:f (3.5) BS02 ZN N/A GO:0002181 ... A0A1D8PTR4 N/A
    846220 8oj3:g (3.5) BS01 rna N/A GO:0005737 ... A0A1D8PSK2 N/A
    846221 8oj3:h (3.5) BS01 rna N/A GO:0003735 ... Q5A109 N/A
    846222 8oj3:i (3.5) BS01 rna N/A GO:0000723 ... A0A1D8PK71 N/A
    846223 8oj3:i (3.5) BS02 rna N/A GO:0000723 ... A0A1D8PK71 N/A
    846224 8oj3:j (3.5) BS01 rna N/A GO:0002181 ... A0A1D8PF08 N/A
    846225 8oj3:j (3.5) BS02 rna N/A GO:0002181 ... A0A1D8PF08 N/A
    846226 8oj3:j (3.5) BS03 MG N/A GO:0002181 ... A0A1D8PF08 N/A
    846227 8oj3:j (3.5) BS04 MG N/A GO:0002181 ... A0A1D8PF08 N/A
    846228 8oj3:k (3.5) BS01 rna N/A GO:0000027 ... Q59LS1 N/A
    846229 8oj3:k (3.5) BS02 MG N/A GO:0000027 ... Q59LS1 N/A
    846230 8oj3:k (3.5) BS03 MG N/A GO:0000027 ... Q59LS1 N/A
    846231 8oj3:l (3.5) BS01 rna N/A GO:0003723 ... A0A1D8PFV1 N/A
    846232 8oj3:l (3.5) BS02 rna N/A GO:0003723 ... A0A1D8PFV1 N/A
    846233 8oj3:l (3.5) BS03 MG N/A GO:0003723 ... A0A1D8PFV1 N/A
    846234 8oj3:m (3.5) BS01 rna N/A GO:0000027 ... Q5AGZ7 N/A
    846235 8oj3:m (3.5) BS02 rna N/A GO:0000027 ... Q5AGZ7 N/A
    846236 8oj3:n (3.5) BS01 rna N/A GO:0002181 ... A0A1D8PCX8 N/A
    846237 8oj3:o (3.5) BS01 rna N/A GO:0000463 ... A0A1D8PDL6 N/A
    846238 8oj3:o (3.5) BS02 rna N/A GO:0000463 ... A0A1D8PDL6 N/A
    846239 8oj3:p (3.5) BS01 rna N/A GO:0000470 ... Q5ANA1 N/A
    846240 8oj3:p (3.5) BS02 rna N/A GO:0000470 ... Q5ANA1 N/A
    846241 8oj3:q (3.5) BS01 rna N/A GO:0002181 ... Q5AEN2 N/A
    846242 8oj3:r (3.5) BS01 rna N/A GO:0003735 ... Q5AIB8 N/A
    846243 8oj3:r (3.5) BS02 rna N/A GO:0003735 ... Q5AIB8 N/A
    846244 8oj3:r (3.5) BS03 MG N/A GO:0003735 ... Q5AIB8 N/A
    846245 8oj3:s (3.5) BS01 rna N/A GO:0003723 ... A0A1D8PHW1 N/A
    846246 8oj3:s (3.5) BS02 rna N/A GO:0003723 ... A0A1D8PHW1 N/A
    846247 8oj3:t (3.5) BS01 rna N/A GO:0003723 ... O59931 N/A
    846248 8oj3:t (3.5) BS02 rna N/A GO:0003723 ... O59931 N/A
    846249 8oj3:u (3.5) BS01 rna N/A GO:0003723 ... A0A1D8PFL9 N/A
    846250 8oj3:v (3.5) BS01 rna N/A GO:0002181 ... Q5A6R1 N/A
    846251 8oj3:v (3.5) BS02 rna N/A GO:0002181 ... Q5A6R1 N/A
    846252 8oj3:v (3.5) BS03 MG N/A GO:0002181 ... Q5A6R1 N/A
    846253 8oj3:v (3.5) BS04 MG N/A GO:0002181 ... Q5A6R1 N/A
    846254 8oj3:w (3.5) BS01 rna N/A GO:0003729 ... Q5AB87 N/A
    846255 8oj3:w (3.5) BS02 MG N/A GO:0003729 ... Q5AB87 N/A
    846256 8oj3:x (3.5) BS01 rna N/A GO:0002181 ... Q59TE0 N/A
    846257 8oj3:x (3.5) BS02 rna N/A GO:0002181 ... Q59TE0 N/A
    846258 8oj3:y (3.5) BS01 rna N/A GO:0003723 ... A0A1D8PK43 N/A
    846259 8oj3:z (3.5) BS01 rna N/A GO:0003723 ... A0A1D8PK40 N/A
    846260 8oj3:z (3.5) BS02 rna N/A GO:0003723 ... A0A1D8PK40 N/A
    846261 8oj5:A (2.9) BS01 rna 2.3.2.- GO:0000077 ... O94874 38383785
    846262 8oj5:B (2.9) BS01 rna ? GO:0000079 ... Q96JB5 38383785
    846263 8oj5:C (2.9) BS01 rna ? GO:0005515 ... Q96HY6 38383785
    846264 8oj5:LA (2.9) BS01 rna ? GO:0002181 ... P62917 38383785
    846265 8oj5:LB (2.9) BS01 rna ? GO:0002181 ... P39023 38383785
    846266 8oj5:LC (2.9) BS01 rna ? GO:0002181 ... P36578 38383785
    846267 8oj5:LC (2.9) BS02 rna ? GO:0002181 ... P36578 38383785
    846268 8oj5:LD (2.9) BS01 rna ? GO:0000027 ... P46777 38383785
    846269 8oj5:LD (2.9) BS02 rna ? GO:0000027 ... P46777 38383785
    846270 8oj5:LE (2.9) BS01 rna ? GO:0002181 ... Q02878 38383785
    846271 8oj5:LF (2.9) BS01 rna ? GO:0000463 ... P18124 38383785
    846272 8oj5:LF (2.9) BS02 rna ? GO:0000463 ... P18124 38383785
    846273 8oj5:LG (2.9) BS01 rna ? GO:0000470 ... P62424 38383785
    846274 8oj5:LG (2.9) BS02 rna ? GO:0000470 ... P62424 38383785
    846275 8oj5:LH (2.9) BS01 rna ? GO:0002181 ... P32969 38383785
    846276 8oj5:LI (2.9) BS01 rna ? GO:0000027 ... Q96L21 38383785
    846277 8oj5:LI (2.9) BS02 rna ? GO:0000027 ... Q96L21 38383785
    846278 8oj5:LJ (2.9) BS01 rna ? GO:0000027 ... P62913 38383785
    846279 8oj5:LJ (2.9) BS02 rna ? GO:0000027 ... P62913 38383785
    846280 8oj5:LL (2.9) BS01 rna ? GO:0001824 ... P26373 38383785
    846281 8oj5:LL (2.9) BS02 rna ? GO:0001824 ... P26373 38383785
    846282 8oj5:LM (2.9) BS01 rna ? GO:0002181 ... P50914 38383785
    846283 8oj5:LN (2.9) BS01 rna ? GO:0002181 ... P61313 38383785
    846284 8oj5:LN (2.9) BS02 rna ? GO:0002181 ... P61313 38383785
    846285 8oj5:LO (2.9) BS01 rna ? GO:0002181 ... P40429 38383785
    846286 8oj5:LP (2.9) BS01 rna ? GO:0002181 ... P18621 38383785
    846287 8oj5:LP (2.9) BS02 rna ? GO:0002181 ... P18621 38383785
    846288 8oj5:LQ (2.9) BS01 rna ? GO:0002181 ... Q07020 38383785
    846289 8oj5:LR (2.9) BS01 rna ? GO:0002181 ... P84098 38383785
    846290 8oj5:LS (2.9) BS01 rna ? GO:0002181 ... Q02543 38383785
    846291 8oj5:LS (2.9) BS02 rna ? GO:0002181 ... Q02543 38383785
    846292 8oj5:LT (2.9) BS01 rna ? GO:0002181 ... P46778 38383785
    846293 8oj5:LT (2.9) BS02 rna ? GO:0002181 ... P46778 38383785
    846294 8oj5:LU (2.9) BS01 rna ? GO:0002181 ... P35268 38383785
    846295 8oj5:LV (2.9) BS01 rna ? GO:0000122 ... P62829 38383785
    846296 8oj5:LW (2.9) BS01 rna ? GO:0000027 ... P83731 38383785
    846297 8oj5:LX (2.9) BS01 rna ? GO:0002181 ... P62750 38383785
    846298 8oj5:LX (2.9) BS02 rna ? GO:0002181 ... P62750 38383785
    846299 8oj5:LY (2.9) BS01 rna ? GO:0002181 ... P61254 38383785
    846300 8oj5:LY (2.9) BS02 rna ? GO:0002181 ... P61254 38383785
    846301 8oj5:LZ (2.9) BS01 rna ? GO:0002181 ... P61353 38383785
    846302 8oj5:La (2.9) BS01 rna ? GO:0002181 ... P46776 38383785
    846303 8oj5:Lb (2.9) BS01 rna ? GO:0002181 ... P47914 38383785
    846304 8oj5:Lc (2.9) BS01 rna ? GO:0002181 ... P62888 38383785
    846305 8oj5:Ld (2.9) BS01 rna ? GO:0002181 ... P62899 38383785
    846306 8oj5:Le (2.9) BS01 rna ? GO:0002181 ... P62910 38383785
    846307 8oj5:Lf (2.9) BS01 rna ? GO:0000049 ... P18077 38383785
    846308 8oj5:Lg (2.9) BS01 rna ? GO:0002181 ... P49207 38383785
    846309 8oj5:Lg (2.9) BS02 ZN ? GO:0002181 ... P49207 38383785
    846310 8oj5:Lh (2.9) BS01 rna ? GO:0000463 ... P42766 38383785
    846311 8oj5:Lh (2.9) BS02 rna ? GO:0000463 ... P42766 38383785
    846312 8oj5:Li (2.9) BS01 rna ? GO:0002181 ... Q9Y3U8 38383785
    846313 8oj5:Lj (2.9) BS01 rna ? GO:0002181 ... P61927 38383785
    846314 8oj5:Lj (2.9) BS02 rna ? GO:0002181 ... P61927 38383785
    846315 8oj5:Lj (2.9) BS03 ZN ? GO:0002181 ... P61927 38383785
    846316 8oj5:Lk (2.9) BS01 rna ? GO:0001501 ... P63173 38383785
    846317 8oj5:Ll (2.9) BS01 rna ? GO:0002181 ... P62891 38383785
    846318 8oj5:Ll (2.9) BS02 rna ? GO:0002181 ... P62891 38383785
    846319 8oj5:Lm (2.9) BS01 rna ? GO:0002181 ... P62987 38383785
    846320 8oj5:Lm (2.9) BS02 ZN ? GO:0002181 ... P62987 38383785
    846321 8oj5:Lo (2.9) BS01 rna ? GO:0002181 ... P83881 38383785
    846322 8oj5:Lo (2.9) BS02 ZN ? GO:0002181 ... P83881 38383785
    846323 8oj5:Lp (2.9) BS01 rna ? GO:0002181 ... P61513 38383785
    846324 8oj5:Lp (2.9) BS02 ZN ? GO:0002181 ... P61513 38383785
    846325 8oj5:Lr (2.9) BS01 rna ? GO:0002181 ... P46779 38383785
    846326 8oj5:Lz (2.9) BS01 rna ? GO:0002181 ... P62906 38383785
    846327 8oj6:A (2.41) BS01 dna 2.7.7.7
    3.1.26.4
    GO:0000166 ... P04293 38806233
    846328 8oj6:A (2.41) BS02 dna 2.7.7.7
    3.1.26.4
    GO:0000166 ... P04293 38806233
    846329 8oj6:A (2.41) BS03 MG 2.7.7.7
    3.1.26.4
    GO:0000166 ... P04293 38806233
    846330 8oj6:B (2.41) BS01 dna ? GO:0003677 ... P10226 38806233
    846331 8oj7:A (2.46) BS01 dna 2.7.7.7
    3.1.26.4
    GO:0000166 ... P04293 38806233
    846332 8oj7:A (2.46) BS02 dna 2.7.7.7
    3.1.26.4
    GO:0000166 ... P04293 38806233
    846333 8oj7:A (2.46) BS03 MG 2.7.7.7
    3.1.26.4
    GO:0000166 ... P04293 38806233
    846334 8oj7:A (2.46) BS04 DTP 2.7.7.7
    3.1.26.4
    GO:0000166 ... P04293 38806233
    846335 8oj7:B (2.46) BS01 dna ? GO:0003677 ... P10226 38806233
    846336 8oj8:1 (3.3) BS01 peptide ? GO:0005048 ... P38377 38383785
    846337 8oj8:1 (3.3) BS02 rna ? GO:0005048 ... P38377 38383785
    846338 8oj8:A (3.3) BS01 rna 2.3.2.- GO:0000077 ... O94874 38383785
    846339 8oj8:K (3.3) BS01 rna ? GO:0000054 ... P56537 38383785
    846340 8oj8:LA (3.3) BS01 rna ? GO:0002181 ... P62917 38383785
    846341 8oj8:LB (3.3) BS01 rna ? GO:0002181 ... P39023 38383785
    846342 8oj8:LC (3.3) BS01 rna ? GO:0002181 ... P36578 38383785
    846343 8oj8:LC (3.3) BS02 rna ? GO:0002181 ... P36578 38383785
    846344 8oj8:LD (3.3) BS01 rna ? GO:0000027 ... P46777 38383785
    846345 8oj8:LD (3.3) BS02 rna ? GO:0000027 ... P46777 38383785
    846346 8oj8:LE (3.3) BS01 rna ? GO:0002181 ... Q02878 38383785
    846347 8oj8:LF (3.3) BS01 rna ? GO:0000463 ... P18124 38383785
    846348 8oj8:LF (3.3) BS02 rna ? GO:0000463 ... P18124 38383785
    846349 8oj8:LG (3.3) BS01 rna ? GO:0000470 ... P62424 38383785
    846350 8oj8:LG (3.3) BS02 rna ? GO:0000470 ... P62424 38383785
    846351 8oj8:LH (3.3) BS01 rna ? GO:0002181 ... P32969 38383785
    846352 8oj8:LI (3.3) BS01 rna ? GO:0000027 ... Q96L21 38383785
    846353 8oj8:LI (3.3) BS02 rna ? GO:0000027 ... Q96L21 38383785
    846354 8oj8:LJ (3.3) BS01 rna ? GO:0000027 ... P62913 38383785
    846355 8oj8:LJ (3.3) BS02 rna ? GO:0000027 ... P62913 38383785
    846356 8oj8:LL (3.3) BS01 rna ? GO:0001824 ... P26373 38383785
    846357 8oj8:LL (3.3) BS02 rna ? GO:0001824 ... P26373 38383785
    846358 8oj8:LM (3.3) BS01 rna ? GO:0002181 ... P50914 38383785
    846359 8oj8:LN (3.3) BS01 rna ? GO:0002181 ... P61313 38383785
    846360 8oj8:LN (3.3) BS02 rna ? GO:0002181 ... P61313 38383785
    846361 8oj8:LO (3.3) BS01 rna ? GO:0002181 ... P40429 38383785
    846362 8oj8:LP (3.3) BS01 rna ? GO:0002181 ... P18621 38383785
    846363 8oj8:LP (3.3) BS02 rna ? GO:0002181 ... P18621 38383785
    846364 8oj8:LQ (3.3) BS01 rna ? GO:0002181 ... Q07020 38383785
    846365 8oj8:LR (3.3) BS01 rna ? GO:0002181 ... P84098 38383785
    846366 8oj8:LS (3.3) BS01 rna ? GO:0002181 ... Q02543 38383785
    846367 8oj8:LS (3.3) BS02 rna ? GO:0002181 ... Q02543 38383785
    846368 8oj8:LT (3.3) BS01 rna ? GO:0002181 ... P46778 38383785
    846369 8oj8:LT (3.3) BS02 rna ? GO:0002181 ... P46778 38383785
    846370 8oj8:LU (3.3) BS01 rna ? GO:0002181 ... P35268 38383785
    846371 8oj8:LV (3.3) BS01 rna ? GO:0000122 ... P62829 38383785
    846372 8oj8:LW (3.3) BS01 rna ? GO:0000027 ... P83731 38383785
    846373 8oj8:LX (3.3) BS01 rna ? GO:0002181 ... P62750 38383785
    846374 8oj8:LX (3.3) BS02 rna ? GO:0002181 ... P62750 38383785
    846375 8oj8:LY (3.3) BS01 rna ? GO:0002181 ... P61254 38383785
    846376 8oj8:LY (3.3) BS02 rna ? GO:0002181 ... P61254 38383785
    846377 8oj8:LZ (3.3) BS01 rna ? GO:0002181 ... P61353 38383785
    846378 8oj8:La (3.3) BS01 rna ? GO:0002181 ... P46776 38383785
    846379 8oj8:Lb (3.3) BS01 rna ? GO:0002181 ... P47914 38383785
    846380 8oj8:Lc (3.3) BS01 rna ? GO:0002181 ... P62888 38383785
    846381 8oj8:Ld (3.3) BS01 rna ? GO:0002181 ... P62899 38383785
    846382 8oj8:Le (3.3) BS01 rna ? GO:0002181 ... P62910 38383785
    846383 8oj8:Lf (3.3) BS01 rna ? GO:0000049 ... P18077 38383785
    846384 8oj8:Lg (3.3) BS01 rna ? GO:0002181 ... P49207 38383785
    846385 8oj8:Lg (3.3) BS02 ZN ? GO:0002181 ... P49207 38383785
    846386 8oj8:Lh (3.3) BS01 rna ? GO:0000463 ... P42766 38383785
    846387 8oj8:Lh (3.3) BS02 rna ? GO:0000463 ... P42766 38383785
    846388 8oj8:Li (3.3) BS01 rna ? GO:0002181 ... Q9Y3U8 38383785
    846389 8oj8:Lj (3.3) BS01 rna ? GO:0002181 ... P61927 38383785
    846390 8oj8:Lj (3.3) BS02 rna ? GO:0002181 ... P61927 38383785
    846391 8oj8:Lj (3.3) BS03 ZN ? GO:0002181 ... P61927 38383785
    846392 8oj8:Lk (3.3) BS01 rna ? GO:0001501 ... P63173 38383785
    846393 8oj8:Ll (3.3) BS01 rna ? GO:0002181 ... P62891 38383785
    846394 8oj8:Ll (3.3) BS02 rna ? GO:0002181 ... P62891 38383785
    846395 8oj8:Lm (3.3) BS01 rna ? GO:0002181 ... P62987 38383785
    846396 8oj8:Lm (3.3) BS02 ZN ? GO:0002181 ... P62987 38383785
    846397 8oj8:Lo (3.3) BS01 rna ? GO:0002181 ... P83881 38383785
    846398 8oj8:Lo (3.3) BS02 ZN ? GO:0002181 ... P83881 38383785
    846399 8oj8:Lp (3.3) BS01 rna ? GO:0002181 ... P61513 38383785
    846400 8oj8:Lp (3.3) BS02 ZN ? GO:0002181 ... P61513 38383785

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).