SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    846201 8k2d:SV (3.2) BS01 rna N/A GO:0000447 ... P0C0V8 38942792
    846202 8k2d:SW (3.2) BS01 rna N/A GO:0002181 ... P0C0W1 38942792
    846203 8k2d:SX (3.2) BS01 rna N/A GO:0000462 ... P0CX29 38942792
    846204 8k2d:SY (3.2) BS01 rna N/A GO:0000462 ... P0CX31 38942792
    846205 8k2d:SZ (3.2) BS01 rna N/A GO:0002181 ... Q3E792 38942792
    846206 8k2d:Sa (3.2) BS01 rna N/A GO:0000054 ... P39939 38942792
    846207 8k2d:Sa (3.2) BS02 ZN N/A GO:0000054 ... P39939 38942792
    846208 8k2d:Sb (3.2) BS01 rna N/A GO:0000028 ... P35997 38942792
    846209 8k2d:Sc (3.2) BS01 rna N/A GO:0000028 ... Q3E7X9 38942792
    846210 8k2d:Sd (3.2) BS01 rna N/A GO:0002181 ... P41057 38942792
    846211 8k2d:Se (3.2) BS01 rna N/A GO:0002181 ... P0CX33 38942792
    846212 8k2d:Sf (3.2) BS01 rna N/A GO:0000028 ... P05759 38942792
    846213 8k2d:Sg (3.2) BS01 rna N/A GO:0001965 ... P38011 38942792
    846214 8k2e:A (1.6) BS01 VIM N/A GO:0003723 ... Q96MU7 N/A
    846215 8k2e:B (1.6) BS01 VIM N/A GO:0003723 ... Q96MU7 N/A
    846216 8k2h:A (2.2) BS01 GNL ? GO:0003674 ... Q7Y231 38730244
    846217 8k2h:B (2.2) BS01 GNL ? GO:0003674 ... Q7Y231 38730244
    846218 8k2i:A (2.5) BS01 NGT ? GO:0003674 ... Q7Y231 38730244
    846219 8k2i:B (2.5) BS01 NGT ? GO:0003674 ... Q7Y231 38730244
    846220 8k2k:A (1.75) BS01 GNL N/A N/A N/A 38730244
    846221 8k2m:A (1.65) BS01 GNL N/A N/A A0AAT8XUB3 38730244
    846222 8k2v:A (3.52) BS01 BTI N/A GO:0004075 ... Q96RQ3 39223421
    846223 8k2v:B (3.52) BS01 BTI N/A GO:0004075 ... Q96RQ3 39223421
    846224 8k2v:C (3.52) BS01 BTI N/A GO:0004075 ... Q96RQ3 39223421
    846225 8k2v:D (3.52) BS01 BTI N/A GO:0004075 ... Q96RQ3 39223421
    846226 8k2v:E (3.52) BS01 BTI N/A GO:0004075 ... Q96RQ3 39223421
    846227 8k2v:F (3.52) BS01 BTI N/A GO:0004075 ... Q96RQ3 39223421
    846228 8k2v:G (3.52) BS01 BTI N/A GO:0004485 ... Q9HCC0 39223421
    846229 8k2v:G (3.52) BS02 ACO N/A GO:0004485 ... Q9HCC0 39223421
    846230 8k2v:H (3.52) BS01 BTI N/A GO:0004485 ... Q9HCC0 39223421
    846231 8k2v:H (3.52) BS02 ACO N/A GO:0004485 ... Q9HCC0 39223421
    846232 8k2v:I (3.52) BS01 BTI N/A GO:0004485 ... Q9HCC0 39223421
    846233 8k2v:I (3.52) BS02 BTI N/A GO:0004485 ... Q9HCC0 39223421
    846234 8k2v:I (3.52) BS03 ACO N/A GO:0004485 ... Q9HCC0 39223421
    846235 8k2v:J (3.52) BS01 BTI N/A GO:0004485 ... Q9HCC0 39223421
    846236 8k2v:J (3.52) BS02 ACO N/A GO:0004485 ... Q9HCC0 39223421
    846237 8k2v:K (3.52) BS01 ACO N/A GO:0004485 ... Q9HCC0 39223421
    846238 8k2v:L (3.52) BS01 ACO N/A GO:0004485 ... Q9HCC0 39223421
    846239 8k2w:R (3.0) BS01 CLR ? GO:0002685 ... P0ABE7
    P41145
    P49682
    38012179
    846240 8k2w:R (3.0) BS02 LPC ? GO:0002685 ... P0ABE7
    P41145
    P49682
    38012179
    846241 8k2w:R (3.0) BS03 FI6 ? GO:0002685 ... P0ABE7
    P41145
    P49682
    38012179
    846242 8k2x:R (3.2) BS01 peptide 1.13.12.13 GO:0002685 ... P0ABE7
    P49682
    Q9GV45
    38012179
    846243 8k2x:R (3.2) BS02 CLR 1.13.12.13 GO:0002685 ... P0ABE7
    P49682
    Q9GV45
    38012179
    846244 8k31:B (-1.00) BS01 ZN N/A GO:0003700 ... Q8S8P5 38734744
    846245 8k32:A (2.12) BS01 NAI N/A GO:0000287 ... D7CJ24 N/A
    846246 8k32:A (2.12) BS02 MG N/A GO:0000287 ... D7CJ24 N/A
    846247 8k32:A (2.12) BS03 MG N/A GO:0000287 ... D7CJ24 N/A
    846248 8k32:B (2.12) BS01 NAI N/A GO:0000287 ... D7CJ24 N/A
    846249 8k32:B (2.12) BS02 MG N/A GO:0000287 ... D7CJ24 N/A
    846250 8k32:B (2.12) BS03 MG N/A GO:0000287 ... D7CJ24 N/A
    846251 8k32:C (2.12) BS01 NAI N/A GO:0000287 ... D7CJ24 N/A
    846252 8k32:C (2.12) BS02 MG N/A GO:0000287 ... D7CJ24 N/A
    846253 8k32:C (2.12) BS03 MG N/A GO:0000287 ... D7CJ24 N/A
    846254 8k32:D (2.12) BS01 NAI N/A GO:0000287 ... D7CJ24 N/A
    846255 8k32:D (2.12) BS02 MG N/A GO:0000287 ... D7CJ24 N/A
    846256 8k32:D (2.12) BS03 MG N/A GO:0000287 ... D7CJ24 N/A
    846257 8k33:A (2.13) BS01 ZN N/A GO:0000303 ... P00441 41350409
    846258 8k33:C (2.13) BS01 ZN N/A GO:0000303 ... P00441 41350409
    846259 8k33:E (2.13) BS01 ZN N/A GO:0000303 ... P00441 41350409
    846260 8k33:G (2.13) BS01 ZN N/A GO:0000303 ... P00441 41350409
    846261 8k33:I (2.13) BS01 ZN N/A GO:0000303 ... P00441 41350409
    846262 8k33:K (2.13) BS01 ZN N/A GO:0000303 ... P00441 41350409
    846263 8k33:L (2.13) BS01 ZN N/A GO:0000303 ... P00441 41350409
    846264 8k33:N (2.13) BS01 ZN N/A GO:0000303 ... P00441 41350409
    846265 8k33:P (2.13) BS01 ZN N/A GO:0000303 ... P00441 41350409
    846266 8k33:U (2.13) BS01 ZN N/A GO:0000303 ... P00441 41350409
    846267 8k33:W (2.13) BS01 ZN N/A GO:0000303 ... P00441 41350409
    846268 8k33:Y (2.13) BS01 ZN N/A GO:0000303 ... P00441 41350409
    846269 8k34:B (2.81) BS01 rna ? GO:0003676 ... A0A1I7NFD7 37932528
    846270 8k34:B (2.81) BS02 MG ? GO:0003676 ... A0A1I7NFD7 37932528
    846271 8k35:G (3.44) BS01 SF4 ? GO:0030430 ... P03738 38096144
    846272 8k35:J (3.44) BS01 SF4 ? GO:0030430 ... P03738 38096144
    846273 8k35:N (3.44) BS01 SF4 ? GO:0030430 ... P03738 38096144
    846274 8k3a:A (2.74) BS01 ZN N/A GO:0000303 ... P00441 41350409
    846275 8k3b:A (1.9) BS01 ELE ? GO:0003677 ... A0A071KWR3 N/A
    846276 8k3d:A (2.3) BS01 dna ? GO:0003700 ... Q16656 38055835
    846277 8k3f:A (2.603) BS01 ZN ? GO:0003677 ... Q9PN35 37629127
    846278 8k3f:B (2.603) BS01 ZN ? GO:0003677 ... Q9PN35 37629127
    846279 8k3f:C (2.603) BS01 ZN ? GO:0003677 ... Q9PN35 37629127
    846280 8k3f:D (2.603) BS01 ZN ? GO:0003677 ... Q9PN35 37629127
    846281 8k3h:A (2.86) BS01 NAD N/A GO:0006520 ... A0AAX7FLQ7 N/A
    846282 8k3h:A (2.86) BS02 NAD N/A GO:0006520 ... A0AAX7FLQ7 N/A
    846283 8k3h:B (2.86) BS01 NAD N/A GO:0006520 ... A0AAX7FLQ7 N/A
    846284 8k3h:B (2.86) BS02 NAD N/A GO:0006520 ... A0AAX7FLQ7 N/A
    846285 8k3l:A (2.3) BS01 CU N/A GO:0000303 ... P00441 41350409
    846286 8k3l:A (2.3) BS02 ZN N/A GO:0000303 ... P00441 41350409
    846287 8k3l:C (2.3) BS01 CU N/A GO:0000303 ... P00441 41350409
    846288 8k3l:C (2.3) BS02 ZN N/A GO:0000303 ... P00441 41350409
    846289 8k3l:E (2.3) BS01 CU N/A GO:0000303 ... P00441 41350409
    846290 8k3l:E (2.3) BS02 ZN N/A GO:0000303 ... P00441 41350409
    846291 8k3l:G (2.3) BS01 CU N/A GO:0000303 ... P00441 41350409
    846292 8k3l:G (2.3) BS02 ZN N/A GO:0000303 ... P00441 41350409
    846293 8k3o:B (3.88) BS01 rna N/A GO:0000028 ... P0A7V0 39588766
    846294 8k3o:C (3.88) BS01 rna N/A GO:0000028 ... P0A7V3 39588766
    846295 8k3o:D (3.88) BS01 rna N/A GO:0000028 ... P0A7V8 39588766
    846296 8k3o:E (3.88) BS01 rna N/A GO:0000028 ... P0A7W1 39588766
    846297 8k3o:E (3.88) BS02 rna N/A GO:0000028 ... P0A7W1 39588766
    846298 8k3o:F (3.88) BS01 rna N/A GO:0002181 ... P02358 39588766
    846299 8k3o:G (3.88) BS01 rna N/A GO:0000028 ... P02359 39588766
    846300 8k3o:H (3.88) BS01 rna N/A GO:0000028 ... P0A7W7 39588766
    846301 8k3o:I (3.88) BS01 rna N/A GO:0002181 ... P0A7X3 39588766
    846302 8k3o:J (3.88) BS01 rna N/A GO:0000049 ... P0A7R5 39588766
    846303 8k3o:K (3.88) BS01 rna N/A GO:0002181 ... P0A7R9 39588766
    846304 8k3o:L (3.88) BS01 rna N/A GO:0000049 ... P0A7S3 39588766
    846305 8k3o:M (3.88) BS01 rna N/A GO:0000049 ... P0A7S9 39588766
    846306 8k3o:N (3.88) BS01 rna N/A GO:0000028 ... P0AG59 39588766
    846307 8k3o:O (3.88) BS01 rna N/A GO:0000028 ... P0ADZ4 39588766
    846308 8k3o:P (3.88) BS01 rna N/A GO:0000028 ... P0A7T3 39588766
    846309 8k3o:Q (3.88) BS01 rna N/A GO:0000028 ... P0AG63 39588766
    846310 8k3o:R (3.88) BS01 rna N/A GO:0002181 ... P0A7T7 39588766
    846311 8k3o:S (3.88) BS01 rna N/A GO:0002181 ... P0A7U3 39588766
    846312 8k3o:T (3.88) BS01 rna N/A GO:0000028 ... P0A7U7 39588766
    846313 8k3p:A (3.64) BS01 VDG 2.4.1.16 GO:0000920 ... P08004 37553334
    846314 8k3p:B (3.64) BS01 VDG 2.4.1.16 GO:0000920 ... P08004 37553334
    846315 8k3t:A (3.57) BS01 UDP 2.4.1.16 GO:0000920 ... P08004 37553334
    846316 8k3t:B (3.57) BS01 UDP 2.4.1.16 GO:0000920 ... P08004 37553334
    846317 8k3u:A (3.06) BS01 UDP 2.4.1.16 GO:0000920 ... P08004 37553334
    846318 8k3u:B (3.06) BS01 UDP 2.4.1.16 GO:0000920 ... P08004 37553334
    846319 8k3v:A (3.1) BS01 UD1 2.4.1.16 GO:0000920 ... P08004 37553334
    846320 8k3v:B (3.1) BS01 UD1 2.4.1.16 GO:0000920 ... P08004 37553334
    846321 8k3w:A (2.91) BS01 UD1 2.4.1.16 GO:0000920 ... P08004 37553334
    846322 8k3w:B (2.91) BS01 UD1 2.4.1.16 GO:0000920 ... P08004 37553334
    846323 8k3x:A (2.86) BS01 BGI 2.4.1.16 GO:0000920 ... P08004 37553334
    846324 8k3x:B (2.86) BS01 BGI 2.4.1.16 GO:0000920 ... P08004 37553334
    846325 8k3y:B (4.42) BS01 ADP 3.4.21.53 GO:0004176 ... A0A059VAZ3 37957149
    846326 8k3y:C (4.42) BS01 ADP 3.4.21.53 GO:0004176 ... A0A059VAZ3 37957149
    846327 8k3y:D (4.42) BS01 ADP 3.4.21.53 GO:0004176 ... A0A059VAZ3 37957149
    846328 8k3y:E (4.42) BS01 ADP 3.4.21.53 GO:0004176 ... A0A059VAZ3 37957149
    846329 8k40:A (2.6) BS01 FAD ? GO:0016491 ... A0A934NG65 37857791
    846330 8k40:B (2.6) BS01 FAD ? GO:0016491 ... A0A934NG65 37857791
    846331 8k41:A (2.39) BS01 NDP ? GO:0016491 ... A0A934NG65 37857791
    846332 8k41:A (2.39) BS02 FAD ? GO:0016491 ... A0A934NG65 37857791
    846333 8k42:R (2.64) BS01 peptide ? N/A B4Y048 38480794
    846334 8k42:S (2.64) BS01 peptide ? N/A B4Y048 38480794
    846335 8k42:T (2.64) BS01 peptide ? N/A B4Y048 38480794
    846336 8k42:U (2.64) BS01 peptide ? N/A B4Y048 38480794
    846337 8k42:V (2.64) BS01 peptide ? N/A B4Y048 38480794
    846338 8k42:V (2.64) BS02 peptide ? N/A B4Y048 38480794
    846339 8k42:W (2.64) BS01 peptide ? N/A B4Y048 38480794
    846340 8k49:R (2.9) BS01 peptide ? N/A B4Y048 38480794
    846341 8k49:S (2.9) BS01 peptide ? N/A B4Y048 38480794
    846342 8k49:S (2.9) BS02 peptide ? N/A B4Y048 38480794
    846343 8k49:T (2.9) BS01 peptide ? N/A B4Y048 38480794
    846344 8k4b:A (3.9) BS01 ATP 3.4.22.- GO:0005524 ... A0A0H2ZPI8 37935699
    846345 8k4b:A (3.9) BS02 ATP 3.4.22.- GO:0005524 ... A0A0H2ZPI8 37935699
    846346 8k4b:B (3.9) BS01 ATP 3.4.22.- GO:0005524 ... A0A0H2ZPI8 37935699
    846347 8k4b:B (3.9) BS02 ATP 3.4.22.- GO:0005524 ... A0A0H2ZPI8 37935699
    846348 8k4c:A (2.1) BS01 VIC 3.1.4.53 GO:0004114 ... Q08499 37918035
    846349 8k4c:A (2.1) BS02 ZN 3.1.4.53 GO:0004114 ... Q08499 37918035
    846350 8k4c:B (2.1) BS01 VIC 3.1.4.53 GO:0004114 ... Q08499 37918035
    846351 8k4c:B (2.1) BS02 ZN 3.1.4.53 GO:0004114 ... Q08499 37918035
    846352 8k4d:A (3.52) BS01 peptide N/A N/A Q8N3U4 N/A
    846353 8k4e:B (3.4) BS01 rna N/A GO:0000028 ... P0A7V0 39588766
    846354 8k4e:C (3.4) BS01 rna N/A GO:0000028 ... P0A7V3 39588766
    846355 8k4e:D (3.4) BS01 rna N/A GO:0000028 ... P0A7V8 39588766
    846356 8k4e:E (3.4) BS01 rna N/A GO:0000028 ... P0A7W1 39588766
    846357 8k4e:F (3.4) BS01 rna N/A GO:0002181 ... P02358 39588766
    846358 8k4e:G (3.4) BS01 rna N/A GO:0000028 ... P02359 39588766
    846359 8k4e:H (3.4) BS01 rna N/A GO:0000028 ... P0A7W7 39588766
    846360 8k4e:I (3.4) BS01 rna N/A GO:0002181 ... P0A7X3 39588766
    846361 8k4e:J (3.4) BS01 rna N/A GO:0000049 ... P0A7R5 39588766
    846362 8k4e:K (3.4) BS01 rna N/A GO:0002181 ... P0A7R9 39588766
    846363 8k4e:L (3.4) BS01 rna N/A GO:0000049 ... P0A7S3 39588766
    846364 8k4e:M (3.4) BS01 rna N/A GO:0000049 ... P0A7S9 39588766
    846365 8k4e:N (3.4) BS01 rna N/A GO:0000028 ... P0AG59 39588766
    846366 8k4e:O (3.4) BS01 rna N/A GO:0000028 ... P0ADZ4 39588766
    846367 8k4e:P (3.4) BS01 rna N/A GO:0000028 ... P0A7T3 39588766
    846368 8k4e:Q (3.4) BS01 rna N/A GO:0000028 ... P0AG63 39588766
    846369 8k4e:R (3.4) BS01 rna N/A GO:0002181 ... P0A7T7 39588766
    846370 8k4e:S (3.4) BS01 rna N/A GO:0002181 ... P0A7U3 39588766
    846371 8k4e:T (3.4) BS01 rna N/A GO:0000028 ... P0A7U7 39588766
    846372 8k4e:X (3.4) BS01 rna N/A GO:0000028 ... P68679 39588766
    846373 8k4f:A (2.48) BS01 SO4 1.3.5.2 GO:0004152 ... Q02127 37870434
    846374 8k4f:A (2.48) BS02 FMN 1.3.5.2 GO:0004152 ... Q02127 37870434
    846375 8k4f:A (2.48) BS03 OG6 1.3.5.2 GO:0004152 ... Q02127 37870434
    846376 8k4f:A (2.48) BS04 SO4 1.3.5.2 GO:0004152 ... Q02127 37870434
    846377 8k4f:A (2.48) BS05 SO4 1.3.5.2 GO:0004152 ... Q02127 37870434
    846378 8k4f:A (2.48) BS06 FJW 1.3.5.2 GO:0004152 ... Q02127 37870434
    846379 8k4h:A (1.95) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 37918035
    846380 8k4h:A (1.95) BS02 R75 3.1.4.53 GO:0004114 ... Q08499 37918035
    846381 8k4h:B (1.95) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 37918035
    846382 8k4h:B (1.95) BS02 R75 3.1.4.53 GO:0004114 ... Q08499 37918035
    846383 8k4k:A (1.7) BS01 NAP N/A GO:0004074 ... P30043 39339186
    846384 8k4k:A (1.7) BS02 VE2 N/A GO:0004074 ... P30043 39339186
    846385 8k4k:B (1.7) BS01 NAP N/A GO:0004074 ... P30043 39339186
    846386 8k4k:B (1.7) BS02 VE2 N/A GO:0004074 ... P30043 39339186
    846387 8k4l:A (2.1) BS01 dna ? GO:0003700 ... Q16656 38055835
    846388 8k4l:A (2.1) BS02 dna ? GO:0003700 ... Q16656 38055835
    846389 8k4l:B (2.1) BS01 dna ? GO:0003700 ... Q16656 38055835
    846390 8k4l:B (2.1) BS02 dna ? GO:0003700 ... Q16656 38055835
    846391 8k4n:D (2.83) BS01 VF0 ? GO:0004930 ... Q9UPC5 N/A
    846392 8k4r:A (2.3) BS01 VPI ? GO:0005737 ... Q76KY3 37870408
    846393 8k4r:C (2.3) BS01 VPI ? GO:0005737 ... Q76KY3 37870408
    846394 8k4s:E (2.9) BS01 JW0 N/A GO:0004888 ... P0ABE7
    P42212
    Q96LA9
    39476841
    846395 8k4t:A (2.3) BS01 peptide N/A N/A P04439 41339521
    846396 8k4t:D (2.3) BS01 peptide N/A N/A P04439 41339521
    846397 8k4u:B (3.2) BS01 ZN N/A GO:0006508 ... A0A0P0IB69 39082798
    846398 8k4v:A (3.095) BS01 peptide N/A N/A P04439 41339521
    846399 8k4v:D (3.095) BS01 peptide N/A N/A P04439 41339521
    846400 8k4v:G (3.095) BS01 peptide N/A N/A P04439 41339521

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).