SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    864001 8r1p:A (2.45) BS01 peptide 2.7.11.1 GO:0004672 ... P11309 38631036
    864002 8r1p:A (2.45) BS02 XIP 2.7.11.1 GO:0004672 ... P11309 38631036
    864003 8r1q:A (1.7) BS01 O6K N/A N/A P0DTC1 N/A
    864004 8r1q:B (1.7) BS01 O6K N/A N/A P0DTC1 N/A
    864005 8r1r:A (1.59) BS01 FAD N/A GO:0016491 ... A0A150VPP7 N/A
    864006 8r1t:A (2.0) BS01 peptide 2.7.11.1 GO:0004672 ... P11309 38631036
    864007 8r1t:A (2.0) BS02 XIJ 2.7.11.1 GO:0004672 ... P11309 38631036
    864008 8r1v:A (2.087) BS01 XJR 2.3.1.179 GO:0004315 ... G3XDA2 38665834
    864009 8r1v:B (2.087) BS01 XJR 2.3.1.179 GO:0004315 ... G3XDA2 38665834
    864010 8r1w:A (2.15) BS01 peptide N/A GO:0004674 ... P11309 N/A
    864011 8r1w:A (2.15) BS02 XIW N/A GO:0004674 ... P11309 N/A
    864012 8r1x:A (-1.00) BS01 dna N/A GO:0000785 ... Q05783 39145407
    864013 8r1x:A (-1.00) BS02 dna N/A GO:0000785 ... Q05783 39145407
    864014 8r22:C (3.9) BS01 ZN N/A GO:0004521 ... Q5TA45 39032489
    864015 8r23:C (3.2) BS01 ZN N/A GO:0004521 ... Q5TA45 39032489
    864016 8r23:C (3.2) BS02 ZN N/A GO:0004521 ... Q5TA45 39032489
    864017 8r25:A (2.1) BS01 peptide N/A GO:0004674 ... P11309 N/A
    864018 8r25:A (2.1) BS02 XJL N/A GO:0004674 ... P11309 N/A
    864019 8r26:A (2.3) BS01 O6K N/A N/A P0DTC1 N/A
    864020 8r26:B (2.3) BS01 O6K N/A N/A P0DTC1 N/A
    864021 8r26:C (2.3) BS01 O6K N/A N/A P0DTC1 N/A
    864022 8r26:D (2.3) BS01 O6K N/A N/A P0DTC1 N/A
    864023 8r27:A (1.95) BS01 peptide N/A GO:0004674 ... P11309 N/A
    864024 8r27:A (1.95) BS02 XJW N/A GO:0004674 ... P11309 N/A
    864025 8r2a:A (2.4) BS01 XLQ N/A GO:0000049 ... A0A7S7RG57 39441903
    864026 8r2a:A (2.4) BS02 LYS N/A GO:0000049 ... A0A7S7RG57 39441903
    864027 8r2a:B (2.4) BS01 XLQ N/A GO:0000049 ... A0A7S7RG57 39441903
    864028 8r2a:B (2.4) BS02 LYS N/A GO:0000049 ... A0A7S7RG57 39441903
    864029 8r2a:C (2.4) BS01 XLQ N/A GO:0000049 ... A0A7S7RG57 39441903
    864030 8r2a:C (2.4) BS02 LYS N/A GO:0000049 ... A0A7S7RG57 39441903
    864031 8r2a:D (2.4) BS01 XLQ N/A GO:0000049 ... A0A7S7RG57 39441903
    864032 8r2a:D (2.4) BS02 LYS N/A GO:0000049 ... A0A7S7RG57 39441903
    864033 8r2b:A (1.8) BS01 XN0 N/A GO:0030638 ... Q9RN64 N/A
    864034 8r2c:A (1.8) BS01 SO4 ? N/A I7M030 38351630
    864035 8r2c:A (1.8) BS02 SO4 ? N/A I7M030 38351630
    864036 8r2d:C (3.9) BS01 ZN N/A GO:0004521 ... Q5TA45 39032489
    864037 8r2d:C (3.9) BS02 ZN N/A GO:0004521 ... Q5TA45 39032489
    864038 8r2e:A (2.0) BS01 XN8 N/A GO:0030638 ... Q9RN64 N/A
    864039 8r2f:AAA (1.25) BS01 ZN N/A GO:0002009 ... P00918 N/A
    864040 8r2f:AAA (1.25) BS02 XNF N/A GO:0002009 ... P00918 N/A
    864041 8r2g:A (3.45) BS01 peptide ? GO:0000150 ... Q14565 39333100
    864042 8r2g:B (3.45) BS01 peptide ? GO:0000150 ... Q14565 39333100
    864043 8r2g:C (3.45) BS01 peptide ? GO:0000150 ... Q14565 39333100
    864044 8r2g:D (3.45) BS01 peptide ? GO:0000150 ... Q14565 39333100
    864045 8r2g:E (3.45) BS01 peptide ? GO:0000150 ... Q14565 39333100
    864046 8r2g:G (3.45) BS01 peptide ? GO:0000150 ... Q14565 39333100
    864047 8r2g:H (3.45) BS01 peptide ? GO:0000150 ... Q14565 39333100
    864048 8r2h:A (2.42) BS01 MG 2.2.1.7 GO:0008661 ... Q8IDW0 39103329
    864049 8r2h:A (2.42) BS02 TPP 2.2.1.7 GO:0008661 ... Q8IDW0 39103329
    864050 8r2h:B (2.42) BS01 MG 2.2.1.7 GO:0008661 ... Q8IDW0 39103329
    864051 8r2h:B (2.42) BS02 TPP 2.2.1.7 GO:0008661 ... Q8IDW0 39103329
    864052 8r2i:A (2.9) BS01 peptide 1.10.3.9 GO:0005506 ... P07753 38322422
    864053 8r2i:A (2.9) BS02 FE2 1.10.3.9 GO:0005506 ... P07753 38322422
    864054 8r2i:A (2.9) BS03 CLA 1.10.3.9 GO:0005506 ... P07753 38322422
    864055 8r2i:A (2.9) BS04 CLA 1.10.3.9 GO:0005506 ... P07753 38322422
    864056 8r2i:A (2.9) BS05 PHO 1.10.3.9 GO:0005506 ... P07753 38322422
    864057 8r2i:A (2.9) BS06 CLA 1.10.3.9 GO:0005506 ... P07753 38322422
    864058 8r2i:A (2.9) BS07 CLA 1.10.3.9 GO:0005506 ... P07753 38322422
    864059 8r2i:A (2.9) BS08 CLA 1.10.3.9 GO:0005506 ... P07753 38322422
    864060 8r2i:A (2.9) BS09 PHO 1.10.3.9 GO:0005506 ... P07753 38322422
    864061 8r2i:A (2.9) BS10 CLA 1.10.3.9 GO:0005506 ... P07753 38322422
    864062 8r2i:B (2.9) BS01 CLA ? GO:0009507 ... P37255 38322422
    864063 8r2i:B (2.9) BS02 CLA ? GO:0009507 ... P37255 38322422
    864064 8r2i:B (2.9) BS03 CLA ? GO:0009507 ... P37255 38322422
    864065 8r2i:B (2.9) BS04 CLA ? GO:0009507 ... P37255 38322422
    864066 8r2i:B (2.9) BS05 CLA ? GO:0009507 ... P37255 38322422
    864067 8r2i:B (2.9) BS06 CLA ? GO:0009507 ... P37255 38322422
    864068 8r2i:B (2.9) BS07 CLA ? GO:0009507 ... P37255 38322422
    864069 8r2i:B (2.9) BS08 CLA ? GO:0009507 ... P37255 38322422
    864070 8r2i:B (2.9) BS09 CLA ? GO:0009507 ... P37255 38322422
    864071 8r2i:B (2.9) BS10 CLA ? GO:0009507 ... P37255 38322422
    864072 8r2i:B (2.9) BS11 CLA ? GO:0009507 ... P37255 38322422
    864073 8r2i:B (2.9) BS12 CLA ? GO:0009507 ... P37255 38322422
    864074 8r2i:B (2.9) BS13 CLA ? GO:0009507 ... P37255 38322422
    864075 8r2i:B (2.9) BS14 CLA ? GO:0009507 ... P37255 38322422
    864076 8r2i:B (2.9) BS15 CLA ? GO:0009507 ... P37255 38322422
    864077 8r2i:B (2.9) BS16 CLA ? GO:0009507 ... P37255 38322422
    864078 8r2i:C (2.9) BS01 peptide ? GO:0005737 ... P10898 38322422
    864079 8r2i:C (2.9) BS02 CLA ? GO:0005737 ... P10898 38322422
    864080 8r2i:C (2.9) BS03 CLA ? GO:0005737 ... P10898 38322422
    864081 8r2i:C (2.9) BS04 CLA ? GO:0005737 ... P10898 38322422
    864082 8r2i:C (2.9) BS05 CLA ? GO:0005737 ... P10898 38322422
    864083 8r2i:C (2.9) BS06 CLA ? GO:0005737 ... P10898 38322422
    864084 8r2i:C (2.9) BS07 CLA ? GO:0005737 ... P10898 38322422
    864085 8r2i:C (2.9) BS08 CLA ? GO:0005737 ... P10898 38322422
    864086 8r2i:C (2.9) BS09 CLA ? GO:0005737 ... P10898 38322422
    864087 8r2i:C (2.9) BS10 CLA ? GO:0005737 ... P10898 38322422
    864088 8r2i:C (2.9) BS11 CLA ? GO:0005737 ... P10898 38322422
    864089 8r2i:C (2.9) BS12 CLA ? GO:0005737 ... P10898 38322422
    864090 8r2i:C (2.9) BS13 CLA ? GO:0005737 ... P10898 38322422
    864091 8r2i:C (2.9) BS14 CLA ? GO:0005737 ... P10898 38322422
    864092 8r2i:D (2.9) BS01 FE2 1.10.3.9 GO:0005506 ... P06007 38322422
    864093 8r2i:D (2.9) BS02 CLA 1.10.3.9 GO:0005506 ... P06007 38322422
    864094 8r2i:D (2.9) BS03 CLA 1.10.3.9 GO:0005506 ... P06007 38322422
    864095 8r2i:D (2.9) BS04 PHO 1.10.3.9 GO:0005506 ... P06007 38322422
    864096 8r2i:D (2.9) BS05 CLA 1.10.3.9 GO:0005506 ... P06007 38322422
    864097 8r2i:D (2.9) BS06 CLA 1.10.3.9 GO:0005506 ... P06007 38322422
    864098 8r2i:D (2.9) BS07 PHO 1.10.3.9 GO:0005506 ... P06007 38322422
    864099 8r2i:D (2.9) BS08 BCT 1.10.3.9 GO:0005506 ... P06007 38322422
    864100 8r2i:D (2.9) BS09 CLA 1.10.3.9 GO:0005506 ... P06007 38322422
    864101 8r2i:D (2.9) BS10 CLA 1.10.3.9 GO:0005506 ... P06007 38322422
    864102 8r2i:E (2.9) BS01 HEM ? GO:0005506 ... P48268 38322422
    864103 8r2i:F (2.9) BS01 HEM ? GO:0009523 ... Q08363 38322422
    864104 8r2i:H (2.9) BS01 CLA ? GO:0009523 ... P22666 38322422
    864105 8r2i:H (2.9) BS02 CLA ? GO:0009523 ... P22666 38322422
    864106 8r2i:H (2.9) BS03 CLA ? GO:0009523 ... P22666 38322422
    864107 8r2i:H (2.9) BS04 CLA ? GO:0009523 ... P22666 38322422
    864108 8r2i:H (2.9) BS05 CLA ? GO:0009523 ... P22666 38322422
    864109 8r2i:K (2.9) BS01 CLA ? GO:0009523 ... P18263 38322422
    864110 8r2j:A (2.4) BS01 DM2 N/A GO:0000166 ... A0A2C9ZNI9 N/A
    864111 8r2j:A (2.4) BS02 DM2 N/A GO:0000166 ... A0A2C9ZNI9 N/A
    864112 8r2j:A (2.4) BS03 NAP N/A GO:0000166 ... A0A2C9ZNI9 N/A
    864113 8r2j:B (2.4) BS01 DM2 N/A GO:0000166 ... A0A2C9ZNI9 N/A
    864114 8r2j:B (2.4) BS02 DM2 N/A GO:0000166 ... A0A2C9ZNI9 N/A
    864115 8r2j:B (2.4) BS03 NAP N/A GO:0000166 ... A0A2C9ZNI9 N/A
    864116 8r2k:AAA (1.6) BS01 ZN N/A GO:0002009 ... P00918 N/A
    864117 8r2k:AAA (1.6) BS02 XPI N/A GO:0002009 ... P00918 N/A
    864118 8r2m:D (3.44) BS01 ZN N/A GO:0000287 ... A0QS66 39384756
    864119 8r2m:D (3.44) BS02 MG N/A GO:0000287 ... A0QS66 39384756
    864120 8r2m:F (3.44) BS01 dna N/A GO:0003677 ... A0QW02 39384756
    864121 8r2m:F (3.44) BS02 dna N/A GO:0003677 ... A0QW02 39384756
    864122 8r2o:A (3.23) BS01 GLC N/A GO:0008643 ... A0A4P1LXE0
    P42858
    N/A
    864123 8r2o:A (3.23) BS02 GLC N/A GO:0008643 ... A0A4P1LXE0
    P42858
    N/A
    864124 8r2o:B (3.23) BS01 GLC N/A GO:0008643 ... A0A4P1LXE0
    P42858
    N/A
    864125 8r2o:B (3.23) BS02 GLC N/A GO:0008643 ... A0A4P1LXE0
    P42858
    N/A
    864126 8r2p:A (2.22) BS01 PLP N/A GO:0005829 ... P02976
    P42588
    N/A
    864127 8r2p:A (2.22) BS02 PLP N/A GO:0005829 ... P02976
    P42588
    N/A
    864128 8r2p:B (2.22) BS01 PLP N/A GO:0005829 ... P02976
    P42588
    N/A
    864129 8r2p:B (2.22) BS02 PLP N/A GO:0005829 ... P02976
    P42588
    N/A
    864130 8r2p:C (2.22) BS01 PLP N/A GO:0005829 ... P02976
    P42588
    N/A
    864131 8r2p:C (2.22) BS02 PLP N/A GO:0005829 ... P02976
    P42588
    N/A
    864132 8r2p:D (2.22) BS01 PLP N/A GO:0005829 ... P02976
    P42588
    N/A
    864133 8r2s:A (2.7) BS01 HEM N/A N/A A0A2U3BXY4 N/A
    864134 8r2s:A (2.7) BS02 IND N/A N/A A0A2U3BXY4 N/A
    864135 8r2t:A (1.824) BS01 FAD N/A GO:0004497 ... M2QGN5 39589922
    864136 8r2t:B (1.824) BS01 FAD N/A GO:0004497 ... M2QGN5 39589922
    864137 8r2u:A (2.41) BS01 FAD N/A N/A A0A1M2VQ92 39589922
    864138 8r2u:B (2.41) BS01 FAD N/A N/A A0A1M2VQ92 39589922
    864139 8r2u:C (2.41) BS01 FAD N/A N/A A0A1M2VQ92 39589922
    864140 8r2u:D (2.41) BS01 FAD N/A N/A A0A1M2VQ92 39589922
    864141 8r2v:A (1.78) BS01 FE N/A GO:0046872 ... M2PH20 39589922
    864142 8r2v:B (1.78) BS01 FE N/A GO:0046872 ... M2PH20 39589922
    864143 8r2w:A (1.46) BS01 FE N/A N/A A0A1M2VMW7 39589922
    864144 8r2w:B (1.46) BS01 FE N/A N/A A0A1M2VMW7 39589922
    864145 8r2x:A (1.573) BS01 FE N/A GO:0046872 ... Q0SFL8 39589922
    864146 8r2x:B (1.573) BS01 FE N/A GO:0046872 ... Q0SFL8 39589922
    864147 8r2y:A (1.03) BS01 6M9 N/A N/A W1DN50 N/A
    864148 8r2z:A (1.1) BS01 XR9 N/A N/A W1DN50 N/A
    864149 8r30:A (0.85) BS01 XR3 N/A N/A Q2PUH3 N/A
    864150 8r31:A (1.65) BS01 XQN N/A N/A W1DN50 N/A
    864151 8r32:A (1.6) BS01 GLU N/A GO:0015276 ... P42260 38369668
    864152 8r32:A (1.6) BS02 2J9 N/A GO:0015276 ... P42260 38369668
    864153 8r32:B (1.6) BS01 GLU N/A GO:0015276 ... P42260 38369668
    864154 8r32:B (1.6) BS02 2J9 N/A GO:0015276 ... P42260 38369668
    864155 8r34:A (2.62) BS01 PO4 ? GO:0005315 ... P39535 38688287
    864156 8r34:B (2.62) BS01 PO4 ? GO:0005315 ... P39535 38688287
    864157 8r36:A (1.9) BS01 KAI N/A GO:0015276 ... P22756 39079583
    864158 8r36:A (1.9) BS02 9TE N/A GO:0015276 ... P22756 39079583
    864159 8r36:B (1.9) BS01 9TE N/A GO:0015276 ... P22756 39079583
    864160 8r36:B (1.9) BS02 KAI N/A GO:0015276 ... P22756 39079583
    864161 8r37:A (1.48) BS01 FCN 2.5.1.18 GO:0004364 ... A0A086IRG1 38203259
    864162 8r37:A (1.48) BS02 MN 2.5.1.18 GO:0004364 ... A0A086IRG1 38203259
    864163 8r37:B (1.48) BS01 FCN 2.5.1.18 GO:0004364 ... A0A086IRG1 38203259
    864164 8r37:B (1.48) BS02 MN 2.5.1.18 GO:0004364 ... A0A086IRG1 38203259
    864165 8r3b:A (1.66) BS01 EVB ? N/A A0A140UHM9 38227741
    864166 8r3c:A (1.58) BS01 EVB ? N/A A0A140UHM9 38227741
    864167 8r3c:B (1.58) BS01 EVB ? N/A A0A140UHM9 38227741
    864168 8r3c:E (1.58) BS01 EVB ? N/A A0A140UHM9 38227741
    864169 8r3f:A (1.55) BS01 XS8 ? GO:0003700 ... Q13469 38396281
    864170 8r3f:B (1.55) BS01 XS8 ? GO:0003700 ... Q13469 38396281
    864171 8r3g:A (4.4) BS01 dna N/A GO:0000987 ... O32253 38842936
    864172 8r3g:A (4.4) BS02 dna N/A GO:0000987 ... O32253 38842936
    864173 8r3g:B (4.4) BS01 dna N/A GO:0000987 ... O32253 38842936
    864174 8r3g:C (4.4) BS01 dna N/A GO:0000987 ... O32253 38842936
    864175 8r3g:D (4.4) BS01 dna N/A GO:0000987 ... O32253 38842936
    864176 8r3g:D (4.4) BS02 dna N/A GO:0000987 ... O32253 38842936
    864177 8r3i:A (1.8) BS01 NAP N/A GO:0000166 ... O76290 N/A
    864178 8r3i:A (1.8) BS02 XSH N/A GO:0000166 ... O76290 N/A
    864179 8r3i:B (1.8) BS01 NAP N/A GO:0000166 ... O76290 N/A
    864180 8r3i:B (1.8) BS02 XSH N/A GO:0000166 ... O76290 N/A
    864181 8r3i:C (1.8) BS01 NAP N/A GO:0000166 ... O76290 N/A
    864182 8r3i:C (1.8) BS02 XSH N/A GO:0000166 ... O76290 N/A
    864183 8r3i:D (1.8) BS01 NAP N/A GO:0000166 ... O76290 N/A
    864184 8r3i:D (1.8) BS02 XSH N/A GO:0000166 ... O76290 N/A
    864185 8r3k:A (3.43) BS01 rna 3.1.-.- GO:0003723 ... M9TI86 38316757
    864186 8r3k:A (3.43) BS02 peptide 3.1.-.- GO:0003723 ... M9TI86 38316757
    864187 8r3k:B (3.43) BS01 rna 2.7.7.48 GO:0000166 ... M9TLW3 38316757
    864188 8r3k:B (3.43) BS02 rna 2.7.7.48 GO:0000166 ... M9TLW3 38316757
    864189 8r3k:B (3.43) BS03 POP 2.7.7.48 GO:0000166 ... M9TLW3 38316757
    864190 8r3k:B (3.43) BS04 MG 2.7.7.48 GO:0000166 ... M9TLW3 38316757
    864191 8r3k:B (3.43) BS05 MG 2.7.7.48 GO:0000166 ... M9TLW3 38316757
    864192 8r3k:C (3.43) BS01 rna ? GO:0001172 ... X5F427 38316757
    864193 8r3k:C (3.43) BS02 rna ? GO:0001172 ... X5F427 38316757
    864194 8r3l:A (3.25) BS01 rna 3.1.-.- GO:0003723 ... M9TI86 38316757
    864195 8r3l:A (3.25) BS02 rna 3.1.-.- GO:0003723 ... M9TI86 38316757
    864196 8r3l:A (3.25) BS03 peptide 3.1.-.- GO:0003723 ... M9TI86 38316757
    864197 8r3l:B (3.25) BS01 rna 2.7.7.48 GO:0000166 ... M9TLW3 38316757
    864198 8r3l:B (3.25) BS02 rna 2.7.7.48 GO:0000166 ... M9TLW3 38316757
    864199 8r3l:C (3.25) BS01 rna ? GO:0001172 ... X5F427 38316757
    864200 8r3m:D (3.49) BS01 ZN N/A GO:0000287 ... A0QS66 39384756

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).