SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    869001 8rpz:F (2.44) BS01 rna ? GO:0000027 ... P62399 38730238
    869002 8rpz:F (2.44) BS02 rna ? GO:0000027 ... P62399 38730238
    869003 8rpz:G (2.44) BS01 rna ? GO:0000027 ... P0AG55 38730238
    869004 8rpz:H (2.44) BS01 rna ? GO:0002181 ... P0A7R1 38730238
    869005 8rpz:J (2.44) BS01 rna ? GO:0002181 ... P0AA10 38730238
    869006 8rpz:K (2.44) BS01 rna ? GO:0002181 ... P0ADY3 38730238
    869007 8rpz:L (2.44) BS01 rna ? GO:0002181 ... P02413 38730238
    869008 8rpz:M (2.44) BS01 rna ? GO:0000027 ... P0ADY7 38730238
    869009 8rpz:M (2.44) BS02 rna ? GO:0000027 ... P0ADY7 38730238
    869010 8rpz:N (2.44) BS01 rna ? GO:0000027 ... P0AG44 38730238
    869011 8rpz:O (2.44) BS01 rna ? GO:0002181 ... P0C018 38730238
    869012 8rpz:O (2.44) BS02 rna ? GO:0002181 ... P0C018 38730238
    869013 8rpz:P (2.44) BS01 rna ? GO:0000027 ... P0A7K6 38730238
    869014 8rpz:Q (2.44) BS01 rna ? GO:0000027 ... P0A7L3 38730238
    869015 8rpz:R (2.44) BS01 rna ? GO:0002181 ... P0AG48 38730238
    869016 8rpz:S (2.44) BS01 rna ? GO:0002181 ... P61175 38730238
    869017 8rpz:T (2.44) BS01 rna ? GO:0000027 ... P0ADZ0 38730238
    869018 8rpz:T (2.44) BS02 peptide ? GO:0000027 ... P0ADZ0 38730238
    869019 8rpz:U (2.44) BS01 rna ? GO:0000027 ... P60624 38730238
    869020 8rpz:V (2.44) BS01 rna ? GO:0000027 ... P68919 38730238
    869021 8rpz:W (2.44) BS01 rna ? GO:0003735 ... P0A7L8 38730238
    869022 8rpz:W (2.44) BS02 rna ? GO:0003735 ... P0A7L8 38730238
    869023 8rpz:X (2.44) BS01 rna ? GO:0000027 ... P0A7M2 38730238
    869024 8rpz:Y (2.44) BS01 rna ? GO:0000027 ... P0A7M6 38730238
    869025 8rpz:Z (2.44) BS01 rna ? GO:0000027 ... P0AG51 38730238
    869026 8rq0:0 (2.44) BS01 rna ? GO:0000027 ... P0A7N4 38730238
    869027 8rq0:1 (2.44) BS01 rna ? GO:0000027 ... P0A7N9 38730238
    869028 8rq0:2 (2.44) BS01 rna ? GO:0002181 ... P0A7P5 38730238
    869029 8rq0:3 (2.44) BS01 rna ? GO:0002181 ... P0A7Q1 38730238
    869030 8rq0:4 (2.44) BS01 rna ? GO:0002181 ... P0A7Q6 38730238
    869031 8rq0:6 (2.44) BS01 rna ? GO:0002181 ... P0A7M9 38730238
    869032 8rq0:C (2.44) BS01 rna ? GO:0000027 ... P60422 38730238
    869033 8rq0:D (2.44) BS01 rna ? GO:0000027 ... P60438 38730238
    869034 8rq0:E (2.44) BS01 rna ? GO:0001070 ... P60723 38730238
    869035 8rq0:E (2.44) BS02 peptide ? GO:0001070 ... P60723 38730238
    869036 8rq0:F (2.44) BS01 rna ? GO:0000027 ... P62399 38730238
    869037 8rq0:F (2.44) BS02 rna ? GO:0000027 ... P62399 38730238
    869038 8rq0:G (2.44) BS01 rna ? GO:0000027 ... P0AG55 38730238
    869039 8rq0:H (2.44) BS01 rna ? GO:0002181 ... P0A7R1 38730238
    869040 8rq0:J (2.44) BS01 rna ? GO:0002181 ... P0AA10 38730238
    869041 8rq0:K (2.44) BS01 rna ? GO:0002181 ... P0ADY3 38730238
    869042 8rq0:L (2.44) BS01 rna ? GO:0002181 ... P02413 38730238
    869043 8rq0:M (2.44) BS01 rna ? GO:0000027 ... P0ADY7 38730238
    869044 8rq0:M (2.44) BS02 rna ? GO:0000027 ... P0ADY7 38730238
    869045 8rq0:N (2.44) BS01 rna ? GO:0000027 ... P0AG44 38730238
    869046 8rq0:O (2.44) BS01 rna ? GO:0002181 ... P0C018 38730238
    869047 8rq0:O (2.44) BS02 rna ? GO:0002181 ... P0C018 38730238
    869048 8rq0:P (2.44) BS01 rna ? GO:0000027 ... P0A7K6 38730238
    869049 8rq0:Q (2.44) BS01 rna ? GO:0000027 ... P0A7L3 38730238
    869050 8rq0:R (2.44) BS01 rna ? GO:0002181 ... P0AG48 38730238
    869051 8rq0:S (2.44) BS01 rna ? GO:0002181 ... P61175 38730238
    869052 8rq0:S (2.44) BS02 peptide ? GO:0002181 ... P61175 38730238
    869053 8rq0:T (2.44) BS01 rna ? GO:0000027 ... P0ADZ0 38730238
    869054 8rq0:T (2.44) BS02 peptide ? GO:0000027 ... P0ADZ0 38730238
    869055 8rq0:U (2.44) BS01 rna ? GO:0000027 ... P60624 38730238
    869056 8rq0:V (2.44) BS01 rna ? GO:0000027 ... P68919 38730238
    869057 8rq0:W (2.44) BS01 rna ? GO:0003735 ... P0A7L8 38730238
    869058 8rq0:W (2.44) BS02 rna ? GO:0003735 ... P0A7L8 38730238
    869059 8rq0:X (2.44) BS01 rna ? GO:0000027 ... P0A7M2 38730238
    869060 8rq0:Y (2.44) BS01 rna ? GO:0000027 ... P0A7M6 38730238
    869061 8rq0:Z (2.44) BS01 rna ? GO:0000027 ... P0AG51 38730238
    869062 8rq1:A (3.11) BS01 ZN N/A N/A Q96SW2 39406745
    869063 8rq2:0 (2.44) BS01 rna ? GO:0000027 ... P0A7N4 38730238
    869064 8rq2:1 (2.44) BS01 rna ? GO:0000027 ... P0A7N9 38730238
    869065 8rq2:2 (2.44) BS01 rna ? GO:0002181 ... P0A7P5 38730238
    869066 8rq2:3 (2.44) BS01 rna ? GO:0002181 ... P0A7Q1 38730238
    869067 8rq2:4 (2.44) BS01 rna ? GO:0002181 ... P0A7Q6 38730238
    869068 8rq2:6 (2.44) BS01 rna ? GO:0002181 ... P0A7M9 38730238
    869069 8rq2:C (2.44) BS01 rna ? GO:0000027 ... P60422 38730238
    869070 8rq2:D (2.44) BS01 rna ? GO:0000027 ... P60438 38730238
    869071 8rq2:E (2.44) BS01 rna ? GO:0001070 ... P60723 38730238
    869072 8rq2:E (2.44) BS02 peptide ? GO:0001070 ... P60723 38730238
    869073 8rq2:F (2.44) BS01 rna ? GO:0000027 ... P62399 38730238
    869074 8rq2:F (2.44) BS02 rna ? GO:0000027 ... P62399 38730238
    869075 8rq2:G (2.44) BS01 rna ? GO:0000027 ... P0AG55 38730238
    869076 8rq2:H (2.44) BS01 rna ? GO:0002181 ... P0A7R1 38730238
    869077 8rq2:J (2.44) BS01 rna ? GO:0002181 ... P0AA10 38730238
    869078 8rq2:K (2.44) BS01 rna ? GO:0002181 ... P0ADY3 38730238
    869079 8rq2:L (2.44) BS01 rna ? GO:0002181 ... P02413 38730238
    869080 8rq2:M (2.44) BS01 rna ? GO:0000027 ... P0ADY7 38730238
    869081 8rq2:M (2.44) BS02 rna ? GO:0000027 ... P0ADY7 38730238
    869082 8rq2:N (2.44) BS01 rna ? GO:0000027 ... P0AG44 38730238
    869083 8rq2:O (2.44) BS01 rna ? GO:0002181 ... P0C018 38730238
    869084 8rq2:O (2.44) BS02 rna ? GO:0002181 ... P0C018 38730238
    869085 8rq2:P (2.44) BS01 rna ? GO:0000027 ... P0A7K6 38730238
    869086 8rq2:Q (2.44) BS01 rna ? GO:0000027 ... P0A7L3 38730238
    869087 8rq2:R (2.44) BS01 rna ? GO:0002181 ... P0AG48 38730238
    869088 8rq2:S (2.44) BS01 rna ? GO:0002181 ... P61175 38730238
    869089 8rq2:S (2.44) BS02 peptide ? GO:0002181 ... P61175 38730238
    869090 8rq2:T (2.44) BS01 rna ? GO:0000027 ... P0ADZ0 38730238
    869091 8rq2:T (2.44) BS02 peptide ? GO:0000027 ... P0ADZ0 38730238
    869092 8rq2:U (2.44) BS01 rna ? GO:0000027 ... P60624 38730238
    869093 8rq2:V (2.44) BS01 rna ? GO:0000027 ... P68919 38730238
    869094 8rq2:W (2.44) BS01 rna ? GO:0003735 ... P0A7L8 38730238
    869095 8rq2:W (2.44) BS02 rna ? GO:0003735 ... P0A7L8 38730238
    869096 8rq2:X (2.44) BS01 rna ? GO:0000027 ... P0A7M2 38730238
    869097 8rq2:Y (2.44) BS01 rna ? GO:0000027 ... P0A7M6 38730238
    869098 8rq2:Z (2.44) BS01 rna ? GO:0000027 ... P0AG51 38730238
    869099 8rq4:A (3.45) BS01 Y01 7.6.2.-
    7.6.2.2
    7.6.2.3
    GO:0005515 ... Q63120 38438394
    869100 8rq4:A (3.45) BS02 RTO 7.6.2.-
    7.6.2.2
    7.6.2.3
    GO:0005515 ... Q63120 38438394
    869101 8rq4:A (3.45) BS03 RTO 7.6.2.-
    7.6.2.2
    7.6.2.3
    GO:0005515 ... Q63120 38438394
    869102 8rq5:A (2.32) BS01 RET N/A N/A N0DKS8 N/A
    869103 8rq5:B (2.32) BS01 RET N/A N/A N0DKS8 N/A
    869104 8rq5:C (2.32) BS01 RET N/A N/A N0DKS8 N/A
    869105 8rq5:D (2.32) BS01 RET N/A N/A N0DKS8 N/A
    869106 8rq5:E (2.32) BS01 RET N/A N/A N0DKS8 N/A
    869107 8rq8:A (2.19) BS01 ZN N/A N/A Q96SW2 39406745
    869108 8rq8:A (2.19) BS02 QFC N/A N/A Q96SW2 39406745
    869109 8rq9:A (2.91) BS01 A1H2F N/A N/A Q96SW2 39406745
    869110 8rq9:A (2.91) BS02 ZN N/A N/A Q96SW2 39406745
    869111 8rq9:B (2.91) BS01 A1H2F N/A N/A O60885 39406745
    869112 8rq9:C (2.91) BS01 A1H2F N/A N/A Q96SW2 39406745
    869113 8rq9:C (2.91) BS02 ZN N/A N/A Q96SW2 39406745
    869114 8rq9:D (2.91) BS01 A1H2F N/A N/A O60885 39406745
    869115 8rqa:A (2.5) BS01 LVY N/A N/A Q96SW2 39406745
    869116 8rqb:A (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    869117 8rqb:B (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    869118 8rqb:C (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    869119 8rqb:D (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    869120 8rqb:E (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    869121 8rqb:F (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    869122 8rqb:G (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    869123 8rqb:H (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    869124 8rqb:I (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    869125 8rqb:J (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    869126 8rqb:K (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    869127 8rqb:L (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    869128 8rqb:M (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    869129 8rqb:N (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    869130 8rqb:O (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    869131 8rqb:P (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    869132 8rqb:Q (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    869133 8rqb:R (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    869134 8rqb:S (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    869135 8rqb:T (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    869136 8rqb:U (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    869137 8rqb:V (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    869138 8rqb:W (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    869139 8rqb:X (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    869140 8rqc:A (2.15) BS01 peptide N/A N/A Q96SW2 39406745
    869141 8rqc:A (2.15) BS02 peptide N/A N/A Q96SW2 39406745
    869142 8rqc:A (2.15) BS03 ZN N/A N/A Q96SW2 39406745
    869143 8rqc:A (2.15) BS04 QFC N/A N/A Q96SW2 39406745
    869144 8rqc:D (2.15) BS01 peptide N/A N/A Q96SW2 39406745
    869145 8rqc:D (2.15) BS02 ZN N/A N/A Q96SW2 39406745
    869146 8rqc:D (2.15) BS03 QFC N/A N/A Q96SW2 39406745
    869147 8rqf:A (3.41) BS01 BJU ? GO:0001618 ... Q14973 38509088
    869148 8rqf:B (3.41) BS01 BJU ? GO:0016032 ... Q76R62 38509088
    869149 8rqh:A (2.5) BS01 FAD ? GO:0000166 ... A0A2S1JZI9 38784727
    869150 8rqh:B (2.5) BS01 FAD ? GO:0000166 ... A0A2S1JZI9 38784727
    869151 8rqi:A (1.94) BS01 AYE N/A N/A A0A3N6MJI3 38802699
    869152 8rqk:A (2.65) BS01 MG N/A N/A P20504 N/A
    869153 8rqk:A (2.65) BS02 ZN N/A N/A P20504 N/A
    869154 8rqk:A (2.65) BS03 ZN N/A N/A P20504 N/A
    869155 8rqk:B (2.65) BS01 ZN N/A N/A P68694 N/A
    869156 8rqk:I (2.65) BS01 rna N/A N/A P68439 N/A
    869157 8rqk:I (2.65) BS02 ZN N/A N/A P68439 N/A
    869158 8rqk:K (2.65) BS01 rna N/A N/A P20635 N/A
    869159 8rqk:Y (2.65) BS01 rna N/A N/A P20637 N/A
    869160 8rql:R (3.03) BS01 FLF N/A GO:0001580 ... Q9NYV8 39557861
    869161 8rql:R (3.03) BS02 FLF N/A GO:0001580 ... Q9NYV8 39557861
    869162 8rqn:A (2.88) BS01 A1H2J N/A GO:0003677 ... P10828 39221768
    869163 8rqo:A (2.74) BS01 A1H2J N/A GO:0003677 ... P10827 39221768
    869164 8rqp:A (1.45) BS01 A1H2K ? GO:0009279 ... P18895 38585376
    869165 8rqp:A (1.45) BS02 A1H2K ? GO:0009279 ... P18895 38585376
    869166 8rqp:A (1.45) BS03 A1H2K ? GO:0009279 ... P18895 38585376
    869167 8rqp:A (1.45) BS04 A1H2K ? GO:0009279 ... P18895 38585376
    869168 8rqp:A (1.45) BS05 A1H2K ? GO:0009279 ... P18895 38585376
    869169 8rqp:A (1.45) BS06 A1H2K ? GO:0009279 ... P18895 38585376
    869170 8rqp:A (1.45) BS07 A1H2K ? GO:0009279 ... P18895 38585376
    869171 8rqp:A (1.45) BS08 A1H2K ? GO:0009279 ... P18895 38585376
    869172 8rqp:A (1.45) BS09 GOL ? GO:0009279 ... P18895 38585376
    869173 8rqp:A (1.45) BS10 A1H52 ? GO:0009279 ... P18895 38585376
    869174 8rqp:A (1.45) BS11 A1H2K ? GO:0009279 ... P18895 38585376
    869175 8rqp:A (1.45) BS12 A1H52 ? GO:0009279 ... P18895 38585376
    869176 8rqp:A (1.45) BS13 CA ? GO:0009279 ... P18895 38585376
    869177 8rqq:A (2.37) BS01 ZMA ? GO:0001609 ... P0ABE7
    P29274
    38585376
    869178 8rqq:A (2.37) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274
    38585376
    869179 8rqq:A (2.37) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274
    38585376
    869180 8rqq:A (2.37) BS04 CLR ? GO:0001609 ... P0ABE7
    P29274
    38585376
    869181 8rqq:A (2.37) BS05 A1H2K ? GO:0001609 ... P0ABE7
    P29274
    38585376
    869182 8rqq:A (2.37) BS06 A1H2K ? GO:0001609 ... P0ABE7
    P29274
    38585376
    869183 8rqq:A (2.37) BS07 A1H2K ? GO:0001609 ... P0ABE7
    P29274
    38585376
    869184 8rqq:A (2.37) BS08 A1H2K ? GO:0001609 ... P0ABE7
    P29274
    38585376
    869185 8rqq:A (2.37) BS09 A1H52 ? GO:0001609 ... P0ABE7
    P29274
    38585376
    869186 8rqq:A (2.37) BS10 A1H2K ? GO:0001609 ... P0ABE7
    P29274
    38585376
    869187 8rqq:A (2.37) BS11 A1H2K ? GO:0001609 ... P0ABE7
    P29274
    38585376
    869188 8rqq:A (2.37) BS12 A1H2K ? GO:0001609 ... P0ABE7
    P29274
    38585376
    869189 8rqr:A (2.19) BS01 A1H2K 2.3.1.269 GO:0005515 ... P23930 38585376
    869190 8rqr:A (2.19) BS02 A1H2K 2.3.1.269 GO:0005515 ... P23930 38585376
    869191 8rqr:A (2.19) BS03 A1H2K 2.3.1.269 GO:0005515 ... P23930 38585376
    869192 8rqr:A (2.19) BS04 A1H2K 2.3.1.269 GO:0005515 ... P23930 38585376
    869193 8rqr:A (2.19) BS05 A1H2K 2.3.1.269 GO:0005515 ... P23930 38585376
    869194 8rqr:A (2.19) BS06 A1H2K 2.3.1.269 GO:0005515 ... P23930 38585376
    869195 8rqr:A (2.19) BS07 A1H2K 2.3.1.269 GO:0005515 ... P23930 38585376
    869196 8rqr:A (2.19) BS08 A1H2K 2.3.1.269 GO:0005515 ... P23930 38585376
    869197 8rqr:A (2.19) BS09 GOL 2.3.1.269 GO:0005515 ... P23930 38585376
    869198 8rqr:A (2.19) BS10 GOL 2.3.1.269 GO:0005515 ... P23930 38585376
    869199 8rqu:B (2.9) BS01 MG N/A GO:0008800 ... N/A 38902262
    869200 8rqv:A (2.19) BS01 ANP N/A N/A P63086 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).