SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    869401 8r3r:C (2.35) BS03 TPP 2.2.1.1 GO:0004802 ... P22976 38767928
    869402 8r3r:D (2.35) BS01 TPP 2.2.1.1 GO:0004802 ... P22976 38767928
    869403 8r3r:D (2.35) BS02 TPP 2.2.1.1 GO:0004802 ... P22976 38767928
    869404 8r3r:D (2.35) BS03 MG 2.2.1.1 GO:0004802 ... P22976 38767928
    869405 8r3s:A (2.8) BS01 TPP 2.2.1.1 GO:0004802 ... P99161 38767928
    869406 8r3s:A (2.8) BS02 MG 2.2.1.1 GO:0004802 ... P99161 38767928
    869407 8r3s:A (2.8) BS03 TPP 2.2.1.1 GO:0004802 ... P99161 38767928
    869408 8r3s:B (2.8) BS01 TPP 2.2.1.1 GO:0004802 ... P99161 38767928
    869409 8r3s:B (2.8) BS02 TPP 2.2.1.1 GO:0004802 ... P99161 38767928
    869410 8r3s:B (2.8) BS03 MG 2.2.1.1 GO:0004802 ... P99161 38767928
    869411 8r3s:C (2.8) BS01 TPP 2.2.1.1 GO:0004802 ... P99161 38767928
    869412 8r3s:C (2.8) BS02 MG 2.2.1.1 GO:0004802 ... P99161 38767928
    869413 8r3s:C (2.8) BS03 TPP 2.2.1.1 GO:0004802 ... P99161 38767928
    869414 8r3s:D (2.8) BS01 TPP 2.2.1.1 GO:0004802 ... P99161 38767928
    869415 8r3s:D (2.8) BS02 TPP 2.2.1.1 GO:0004802 ... P99161 38767928
    869416 8r3s:D (2.8) BS03 MG 2.2.1.1 GO:0004802 ... P99161 38767928
    869417 8r3s:E (2.8) BS01 TPP 2.2.1.1 GO:0004802 ... P99161 38767928
    869418 8r3s:E (2.8) BS02 MG 2.2.1.1 GO:0004802 ... P99161 38767928
    869419 8r3s:E (2.8) BS03 TPP 2.2.1.1 GO:0004802 ... P99161 38767928
    869420 8r3s:F (2.8) BS01 TPP 2.2.1.1 GO:0004802 ... P99161 38767928
    869421 8r3s:F (2.8) BS02 TPP 2.2.1.1 GO:0004802 ... P99161 38767928
    869422 8r3s:F (2.8) BS03 MG 2.2.1.1 GO:0004802 ... P99161 38767928
    869423 8r3s:G (2.8) BS01 TPP 2.2.1.1 GO:0004802 ... P99161 38767928
    869424 8r3s:G (2.8) BS02 MG 2.2.1.1 GO:0004802 ... P99161 38767928
    869425 8r3s:G (2.8) BS03 TPP 2.2.1.1 GO:0004802 ... P99161 38767928
    869426 8r3s:H (2.8) BS01 TPP 2.2.1.1 GO:0004802 ... P99161 38767928
    869427 8r3s:H (2.8) BS02 TPP 2.2.1.1 GO:0004802 ... P99161 38767928
    869428 8r3s:H (2.8) BS03 MG 2.2.1.1 GO:0004802 ... P99161 38767928
    869429 8r3s:I (2.8) BS01 TPP 2.2.1.1 GO:0004802 ... P99161 38767928
    869430 8r3s:I (2.8) BS02 MG 2.2.1.1 GO:0004802 ... P99161 38767928
    869431 8r3s:I (2.8) BS03 TPP 2.2.1.1 GO:0004802 ... P99161 38767928
    869432 8r3s:J (2.8) BS01 TPP 2.2.1.1 GO:0004802 ... P99161 38767928
    869433 8r3s:J (2.8) BS02 TPP 2.2.1.1 GO:0004802 ... P99161 38767928
    869434 8r3s:J (2.8) BS03 MG 2.2.1.1 GO:0004802 ... P99161 38767928
    869435 8r3u:AAA (1.63) BS01 XTQ N/A GO:0005515 ... P49366 N/A
    869436 8r3u:AAA (1.63) BS02 XTQ N/A GO:0005515 ... P49366 N/A
    869437 8r3u:BBB (1.63) BS01 XTQ N/A GO:0005515 ... P49366 N/A
    869438 8r3u:BBB (1.63) BS02 XTQ N/A GO:0005515 ... P49366 N/A
    869439 8r3u:CCC (1.63) BS01 XTQ N/A GO:0005515 ... P49366 N/A
    869440 8r3u:CCC (1.63) BS02 XTQ N/A GO:0005515 ... P49366 N/A
    869441 8r3u:DDD (1.63) BS01 XTQ N/A GO:0005515 ... P49366 N/A
    869442 8r3u:DDD (1.63) BS02 XTQ N/A GO:0005515 ... P49366 N/A
    869443 8r3v:12 (3.28) BS01 rna ? GO:0000027 ... P0A7M2 38409277
    869444 8r3v:32 (3.28) BS01 rna ? GO:0000027 ... P0AG51 38409277
    869445 8r3v:32 (3.28) BS02 rna ? GO:0000027 ... P0AG51 38409277
    869446 8r3v:4 (3.28) BS01 rna ? GO:0002181 ... P0A7M9 38409277
    869447 8r3v:4 (3.28) BS02 rna ? GO:0002181 ... P0A7M9 38409277
    869448 8r3v:4 (3.28) BS03 ZN ? GO:0002181 ... P0A7M9 38409277
    869449 8r3v:62 (3.28) BS01 rna ? GO:0002181 ... P0A7Q1 38409277
    869450 8r3v:B (3.28) BS01 rna ? GO:0000028 ... P0A7V0 38409277
    869451 8r3v:B (3.28) BS02 peptide ? GO:0000028 ... P0A7V0 38409277
    869452 8r3v:B2 (3.28) BS01 rna ? GO:0000028 ... P0A7V0 38409277
    869453 8r3v:C1 (3.28) BS01 rna ? GO:0000028 ... P0A7V3 38409277
    869454 8r3v:C1 (3.28) BS02 rna ? GO:0000028 ... P0A7V3 38409277
    869455 8r3v:C2 (3.28) BS01 rna ? GO:0000028 ... P0A7V3 38409277
    869456 8r3v:C2 (3.28) BS02 rna ? GO:0000028 ... P0A7V3 38409277
    869457 8r3v:D1 (3.28) BS01 rna ? GO:0000028 ... P0A7V8 38409277
    869458 8r3v:D2 (3.28) BS01 rna ? GO:0000028 ... P0A7V8 38409277
    869459 8r3v:E1 (3.28) BS01 rna ? GO:0000028 ... P0A7W1 38409277
    869460 8r3v:E1 (3.28) BS02 rna ? GO:0000028 ... P0A7W1 38409277
    869461 8r3v:E2 (3.28) BS01 rna ? GO:0000028 ... P0A7W1 38409277
    869462 8r3v:E2 (3.28) BS02 rna ? GO:0000028 ... P0A7W1 38409277
    869463 8r3v:F1 (3.28) BS01 rna ? GO:0002181 ... P02358 38409277
    869464 8r3v:F2 (3.28) BS01 rna ? GO:0002181 ... P02358 38409277
    869465 8r3v:G1 (3.28) BS01 rna ? GO:0000028 ... P02359 38409277
    869466 8r3v:G2 (3.28) BS01 rna ? GO:0000028 ... P02359 38409277
    869467 8r3v:G2 (3.28) BS02 rna ? GO:0000028 ... P02359 38409277
    869468 8r3v:G2 (3.28) BS03 rna ? GO:0000028 ... P02359 38409277
    869469 8r3v:H1 (3.28) BS01 rna ? GO:0000028 ... P0A7W7 38409277
    869470 8r3v:H2 (3.28) BS01 rna ? GO:0000028 ... P0A7W7 38409277
    869471 8r3v:I1 (3.28) BS01 rna ? GO:0002181 ... P0A7X3 38409277
    869472 8r3v:I1 (3.28) BS02 rna ? GO:0002181 ... P0A7X3 38409277
    869473 8r3v:I2 (3.28) BS01 rna ? GO:0002181 ... P0A7X3 38409277
    869474 8r3v:I2 (3.28) BS02 rna ? GO:0002181 ... P0A7X3 38409277
    869475 8r3v:J1 (3.28) BS01 rna ? GO:0000049 ... P0A7R5 38409277
    869476 8r3v:J2 (3.28) BS01 rna ? GO:0000049 ... P0A7R5 38409277
    869477 8r3v:K1 (3.28) BS01 rna ? GO:0002181 ... P0A7R9 38409277
    869478 8r3v:K2 (3.28) BS01 rna ? GO:0002181 ... P0A7R9 38409277
    869479 8r3v:L1 (3.28) BS01 rna ? GO:0000049 ... P0A7S3 38409277
    869480 8r3v:L2 (3.28) BS01 rna ? GO:0000049 ... P0A7S3 38409277
    869481 8r3v:M1 (3.28) BS01 rna ? GO:0000049 ... P0A7S9 38409277
    869482 8r3v:M2 (3.28) BS01 rna ? GO:0000049 ... P0A7S9 38409277
    869483 8r3v:M2 (3.28) BS02 rna ? GO:0000049 ... P0A7S9 38409277
    869484 8r3v:N1 (3.28) BS01 rna ? GO:0000028 ... P0AG59 38409277
    869485 8r3v:N2 (3.28) BS01 rna ? GO:0000028 ... P0AG59 38409277
    869486 8r3v:O1 (3.28) BS01 rna ? GO:0000028 ... P0ADZ4 38409277
    869487 8r3v:O2 (3.28) BS01 rna ? GO:0000028 ... P0ADZ4 38409277
    869488 8r3v:O2 (3.28) BS02 rna ? GO:0000028 ... P0ADZ4 38409277
    869489 8r3v:P1 (3.28) BS01 rna ? GO:0000028 ... P0A7T3 38409277
    869490 8r3v:Q1 (3.28) BS01 rna ? GO:0000028 ... P0AG63 38409277
    869491 8r3v:Q2 (3.28) BS01 rna ? GO:0000028 ... P0AG63 38409277
    869492 8r3v:R1 (3.28) BS01 rna ? GO:0002181 ... P0A7T7 38409277
    869493 8r3v:R2 (3.28) BS01 rna ? GO:0002181 ... P0A7T7 38409277
    869494 8r3v:S1 (3.28) BS01 rna ? GO:0002181 ... P0A7U3 38409277
    869495 8r3v:S2 (3.28) BS01 rna ? GO:0002181 ... P0A7U3 38409277
    869496 8r3v:T1 (3.28) BS01 rna ? GO:0000028 ... P0A7U7 38409277
    869497 8r3v:U1 (3.28) BS01 rna ? GO:0000028 ... P68679 38409277
    869498 8r3v:U1 (3.28) BS02 rna ? GO:0000028 ... P68679 38409277
    869499 8r3v:U2 (3.28) BS01 rna ? GO:0000028 ... P68679 38409277
    869500 8r3v:U2 (3.28) BS02 rna ? GO:0000028 ... P68679 38409277
    869501 8r3v:a2 (3.28) BS01 rna ? GO:0000027 ... P0A7L0 38409277
    869502 8r3v:b2 (3.28) BS01 rna ? GO:0000027 ... P60422 38409277
    869503 8r3v:b2 (3.28) BS02 rna ? GO:0000027 ... P60422 38409277
    869504 8r3v:e2 (3.28) BS01 rna ? GO:0000027 ... P62399 38409277
    869505 8r3v:e2 (3.28) BS02 rna ? GO:0000027 ... P62399 38409277
    869506 8r3v:e2 (3.28) BS03 rna ? GO:0000027 ... P62399 38409277
    869507 8r3v:g2 (3.28) BS01 rna ? GO:0000027 ... P0A7N9 38409277
    869508 8r3v:h2 (3.28) BS01 rna ? GO:0000027 ... P0ADY7 38409277
    869509 8r3v:h2 (3.28) BS02 rna ? GO:0000027 ... P0ADY7 38409277
    869510 8r3v:i2 (3.28) BS01 rna ? GO:0002181 ... P0A7R1 38409277
    869511 8r3v:i2 (3.28) BS02 rna ? GO:0002181 ... P0A7R1 38409277
    869512 8r3v:l2 (3.28) BS01 rna ? GO:0002181 ... P0A7P5 38409277
    869513 8r3v:o2 (3.28) BS01 rna ? GO:0002181 ... P02413 38409277
    869514 8r3v:r2 (3.28) BS01 rna ? GO:0002181 ... P0C018 38409277
    869515 8r3v:r2 (3.28) BS02 rna ? GO:0002181 ... P0C018 38409277
    869516 8r3v:z2 (3.28) BS01 rna ? GO:0000027 ... P0A7L8 38409277
    869517 8r3v:z2 (3.28) BS02 rna ? GO:0000027 ... P0A7L8 38409277
    869518 8r3x:A (2.591) BS01 peptide N/A GO:0004672 ... P41743 39762628
    869519 8r3x:B (2.591) BS01 peptide N/A GO:0004672 ... P41743 39762628
    869520 8r3y:I (3.68) BS01 ANP N/A GO:0004672 ... P41743 39762628
    869521 8r3z:A (3.4) BS01 rna N/A GO:0003676 ... A0AAT8XUE3 38951509
    869522 8r3z:A (3.4) BS02 MG N/A GO:0003676 ... A0AAT8XUE3 38951509
    869523 8r41:A (2.25) BS01 XUF ? GO:0005975 ... P36222 38427954
    869524 8r41:B (2.25) BS01 XUF ? GO:0005975 ... P36222 38427954
    869525 8r42:A (2.32) BS01 XUC ? GO:0005975 ... P36222 38427954
    869526 8r42:B (2.32) BS01 SO4 ? GO:0005975 ... P36222 38427954
    869527 8r42:B (2.32) BS02 XUC ? GO:0005975 ... P36222 38427954
    869528 8r43:A (0.87) BS01 MAV ? N/A A0A7I9C8Z1 40102416
    869529 8r43:A (0.87) BS02 BEM ? N/A A0A7I9C8Z1 40102416
    869530 8r43:A (0.87) BS03 BEM ? N/A A0A7I9C8Z1 40102416
    869531 8r45:A (1.86) BS01 O6E N/A GO:0006355 ... B4YB07 40544164
    869532 8r45:B (1.86) BS01 O6E N/A GO:0006355 ... B4YB07 40544164
    869533 8r49:A (2.8) BS01 GLC N/A GO:0004645 ... P04045 39398113
    869534 8r49:A (2.8) BS02 GLC N/A GO:0004645 ... P04045 39398113
    869535 8r49:B (2.8) BS01 GLC N/A GO:0004645 ... P04045 39398113
    869536 8r49:B (2.8) BS02 GLC N/A GO:0004645 ... P04045 39398113
    869537 8r49:B (2.8) BS03 GLC N/A GO:0004645 ... P04045 39398113
    869538 8r49:C (2.8) BS01 GLC N/A GO:0004645 ... P04045 39398113
    869539 8r49:C (2.8) BS02 GLC N/A GO:0004645 ... P04045 39398113
    869540 8r49:C (2.8) BS03 GLC N/A GO:0004645 ... P04045 39398113
    869541 8r4b:A (3.88) BS01 GSP ? GO:0004674 ... Q8KC98 38666771
    869542 8r4d:A (3.88) BS01 GSP ? GO:0004674 ... Q8KC98 38666771
    869543 8r4f:A (3.186) BS01 CU N/A GO:0005507 ... A0A377PPH3 40313819
    869544 8r4f:A (3.186) BS02 CU N/A GO:0005507 ... A0A377PPH3 40313819
    869545 8r4f:B (3.186) BS01 CU N/A GO:0005507 ... A0A377PPH3 40313819
    869546 8r4f:B (3.186) BS02 CU N/A GO:0005507 ... A0A377PPH3 40313819
    869547 8r4f:C (3.186) BS01 CU N/A GO:0005507 ... A0A377PPH3 40313819
    869548 8r4f:C (3.186) BS02 CU N/A GO:0005507 ... A0A377PPH3 40313819
    869549 8r4f:D (3.186) BS01 CU N/A GO:0005507 ... A0A377PPH3 40313819
    869550 8r4f:D (3.186) BS02 CU N/A GO:0005507 ... A0A377PPH3 40313819
    869551 8r4f:E (3.186) BS01 CU N/A GO:0005507 ... A0A377PPH3 40313819
    869552 8r4f:E (3.186) BS02 CU N/A GO:0005507 ... A0A377PPH3 40313819
    869553 8r4g:A (3.1) BS01 GLC N/A GO:0004645 ... P04045 39398113
    869554 8r4g:B (3.1) BS01 GLC N/A GO:0004645 ... P04045 39398113
    869555 8r4g:C (3.1) BS01 GLC N/A GO:0004645 ... P04045 39398113
    869556 8r4h:A (2.937) BS01 CU N/A GO:0005507 ... A0A097R5T5
    A0A377PPH3
    40313819
    869557 8r4h:A (2.937) BS02 CU N/A GO:0005507 ... A0A097R5T5
    A0A377PPH3
    40313819
    869558 8r4h:A (2.937) BS03 CU N/A GO:0005507 ... A0A097R5T5
    A0A377PPH3
    40313819
    869559 8r4h:A (2.937) BS04 CU N/A GO:0005507 ... A0A097R5T5
    A0A377PPH3
    40313819
    869560 8r4h:B (2.937) BS01 CU N/A GO:0005507 ... A0A097R5T5
    A0A377PPH3
    40313819
    869561 8r4h:B (2.937) BS02 CU N/A GO:0005507 ... A0A097R5T5
    A0A377PPH3
    40313819
    869562 8r4h:B (2.937) BS03 CU N/A GO:0005507 ... A0A097R5T5
    A0A377PPH3
    40313819
    869563 8r4h:B (2.937) BS04 CU N/A GO:0005507 ... A0A097R5T5
    A0A377PPH3
    40313819
    869564 8r4l:A (2.0) BS01 CU1 N/A GO:0042802 ... A0A2D2D105 N/A
    869565 8r4l:A (2.0) BS02 CU1 N/A GO:0042802 ... A0A2D2D105 N/A
    869566 8r4l:A (2.0) BS03 CU1 N/A GO:0042802 ... A0A2D2D105 N/A
    869567 8r4l:A (2.0) BS04 CU1 N/A GO:0042802 ... A0A2D2D105 N/A
    869568 8r4l:A (2.0) BS05 CU1 N/A GO:0042802 ... A0A2D2D105 N/A
    869569 8r4l:A (2.0) BS06 CU1 N/A GO:0042802 ... A0A2D2D105 N/A
    869570 8r4l:A (2.0) BS07 CU1 N/A GO:0042802 ... A0A2D2D105 N/A
    869571 8r4l:A (2.0) BS08 CU1 N/A GO:0042802 ... A0A2D2D105 N/A
    869572 8r4l:A (2.0) BS09 CU1 N/A GO:0042802 ... A0A2D2D105 N/A
    869573 8r4l:A (2.0) BS10 CU1 N/A GO:0042802 ... A0A2D2D105 N/A
    869574 8r4l:A (2.0) BS11 CU1 N/A GO:0042802 ... A0A2D2D105 N/A
    869575 8r4l:A (2.0) BS12 CU1 N/A GO:0042802 ... A0A2D2D105 N/A
    869576 8r4l:A (2.0) BS13 CU1 N/A GO:0042802 ... A0A2D2D105 N/A
    869577 8r4l:B (2.0) BS01 CU1 N/A GO:0042802 ... A0A2D2D105 N/A
    869578 8r4l:B (2.0) BS02 CU1 N/A GO:0042802 ... A0A2D2D105 N/A
    869579 8r4l:B (2.0) BS03 CU1 N/A GO:0042802 ... A0A2D2D105 N/A
    869580 8r4l:B (2.0) BS04 CU1 N/A GO:0042802 ... A0A2D2D105 N/A
    869581 8r4l:B (2.0) BS05 CU1 N/A GO:0042802 ... A0A2D2D105 N/A
    869582 8r4l:B (2.0) BS06 CU1 N/A GO:0042802 ... A0A2D2D105 N/A
    869583 8r4l:B (2.0) BS07 CU1 N/A GO:0042802 ... A0A2D2D105 N/A
    869584 8r4l:B (2.0) BS08 CU1 N/A GO:0042802 ... A0A2D2D105 N/A
    869585 8r4l:B (2.0) BS09 CU1 N/A GO:0042802 ... A0A2D2D105 N/A
    869586 8r4l:B (2.0) BS10 CU1 N/A GO:0042802 ... A0A2D2D105 N/A
    869587 8r4l:B (2.0) BS11 CU1 N/A GO:0042802 ... A0A2D2D105 N/A
    869588 8r4m:A (1.95) BS01 CU1 N/A N/A A0A2D2D105 N/A
    869589 8r4m:A (1.95) BS02 CU1 N/A N/A A0A2D2D105 N/A
    869590 8r4m:A (1.95) BS03 CU1 N/A N/A A0A2D2D105 N/A
    869591 8r4m:A (1.95) BS04 CU1 N/A N/A A0A2D2D105 N/A
    869592 8r4m:A (1.95) BS05 CU1 N/A N/A A0A2D2D105 N/A
    869593 8r4m:A (1.95) BS06 CU1 N/A N/A A0A2D2D105 N/A
    869594 8r4m:A (1.95) BS07 CU1 N/A N/A A0A2D2D105 N/A
    869595 8r4m:A (1.95) BS08 CU1 N/A N/A A0A2D2D105 N/A
    869596 8r4m:A (1.95) BS09 CU1 N/A N/A A0A2D2D105 N/A
    869597 8r4m:A (1.95) BS10 CU1 N/A N/A A0A2D2D105 N/A
    869598 8r4m:A (1.95) BS11 CU1 N/A N/A A0A2D2D105 N/A
    869599 8r4m:A (1.95) BS12 CU1 N/A N/A A0A2D2D105 N/A
    869600 8r4m:B (1.95) BS01 CU1 N/A N/A A0A2D2D105 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).