SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    8601 1d8f:B (2.4) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10669564
    8602 1d8f:B (2.4) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10669564
    8603 1d8f:B (2.4) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10669564
    8604 1d8f:B (2.4) BS06 SPI 3.4.24.17 GO:0004222 ... P08254 10669564 MOAD: ic50=18nM
    BindingDB: IC50=18nM
    8605 1d8h:A (2.0) BS01 MN 3.6.1.74 GO:0004651 ... O13297 10589681
    8606 1d8h:A (2.0) BS02 SO4 3.6.1.74 GO:0004651 ... O13297 10589681
    8607 1d8h:B (2.0) BS01 MN 3.6.1.74 GO:0004651 ... O13297 10589681
    8608 1d8h:B (2.0) BS02 SO4 3.6.1.74 GO:0004651 ... O13297 10589681
    8609 1d8h:C (2.0) BS01 MN 3.6.1.74 GO:0004651 ... O13297 10589681
    8610 1d8h:C (2.0) BS02 SO4 3.6.1.74 GO:0004651 ... O13297 10589681
    8611 1d8i:A (2.05) BS01 SO4 3.6.1.74 GO:0004651 ... O13297 10589681
    8612 1d8i:A (2.05) BS02 SO4 3.6.1.74 GO:0004651 ... O13297 10589681
    8613 1d8i:B (2.05) BS01 SO4 3.6.1.74 GO:0004651 ... O13297 10589681
    8614 1d8i:B (2.05) BS02 SO4 3.6.1.74 GO:0004651 ... O13297 10589681
    8615 1d8i:C (2.05) BS01 SO4 3.6.1.74 GO:0004651 ... O13297 10589681
    8616 1d8i:C (2.05) BS02 SO4 3.6.1.74 GO:0004651 ... O13297 10589681
    8617 1d8m:A (2.44) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 11327577
    8618 1d8m:A (2.44) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 11327577
    8619 1d8m:A (2.44) BS03 CA 3.4.24.17 GO:0004222 ... P08254 11327577
    8620 1d8m:A (2.44) BS04 CA 3.4.24.17 GO:0004222 ... P08254 11327577
    8621 1d8m:A (2.44) BS05 CA 3.4.24.17 GO:0004222 ... P08254 11327577
    8622 1d8m:B (2.44) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 11327577
    8623 1d8m:B (2.44) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 11327577
    8624 1d8m:B (2.44) BS03 CA 3.4.24.17 GO:0004222 ... P08254 11327577
    8625 1d8m:B (2.44) BS04 CA 3.4.24.17 GO:0004222 ... P08254 11327577
    8626 1d8m:B (2.44) BS05 CA 3.4.24.17 GO:0004222 ... P08254 11327577
    8627 1d8m:B (2.44) BS06 BBH 3.4.24.17 GO:0004222 ... P08254 11327577 BindingDB: IC50=3.1nM
    8628 1d8t:A (2.35) BS01 peptide ? GO:0000287 ... P0CE47 10625477
    8629 1d8t:A (2.35) BS02 GDP ? GO:0000287 ... P0CE47 10625477
    8630 1d8t:B (2.35) BS01 peptide ? GO:0000287 ... P0CE47 10625477
    8631 1d8t:B (2.35) BS02 GDP ? GO:0000287 ... P0CE47 10625477
    8632 1d8u:A (2.35) BS01 HEM 1.7.2.- GO:0005634 ... O04986 10986467
    8633 1d8u:B (2.35) BS01 HEM 1.7.2.- GO:0005634 ... O04986 10986467
    8634 1d8w:A (1.6) BS01 ZN 5.3.1.14 GO:0005737 ... P32170 10891278
    8635 1d8w:B (1.6) BS01 ZN 5.3.1.14 GO:0005737 ... P32170 10891278
    8636 1d8w:C (1.6) BS01 ZN 5.3.1.14 GO:0005737 ... P32170 10891278
    8637 1d8w:D (1.6) BS01 ZN 5.3.1.14 GO:0005737 ... P32170 10891278
    8638 1d8y:A (2.08) BS01 dna 2.7.7.7 GO:0003676 ... P00582 10588690
    8639 1d8y:A (2.08) BS02 ZN 2.7.7.7 GO:0003676 ... P00582 10588690
    8640 1d9d:A (2.18) BS01 rna 2.7.7.7 GO:0003676 ... P00582 10588690
    8641 1d9d:A (2.18) BS02 ZN 2.7.7.7 GO:0003676 ... P00582 10588690
    8642 1d9d:A (2.18) BS03 ZN 2.7.7.7 GO:0003676 ... P00582 10588690
    8643 1d9d:A (2.18) BS04 MG 2.7.7.7 GO:0003676 ... P00582 10588690
    8644 1d9f:A (3.0) BS01 dna 2.7.7.7 GO:0003676 ... P00582 10588690
    8645 1d9i:A (2.3) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 10713516
    8646 1d9i:A (2.3) BS02 00P 3.4.21.5 GO:0004252 ... P00734 10713516 MOAD: Ki=0.78nM
    8647 1d9k:A (3.2) BS01 peptide ? N/A P01739 10583947
    8648 1d9k:C (3.2) BS01 peptide ? GO:0006955 ... P01910 10583947
    8649 1d9k:D (3.2) BS01 peptide ? GO:0006955 ... P06343 10583947
    8650 1d9k:E (3.2) BS01 peptide ? N/A P01739 10583947
    8651 1d9k:G (3.2) BS01 peptide ? GO:0006955 ... P01910 10583947
    8652 1d9k:H (3.2) BS01 peptide ? GO:0006955 ... P06343 10583947
    8653 1d9v:A (1.75) BS01 PO4 ? GO:0042597 ... P35755 11747438
    8654 1d9y:A (2.2) BS01 FE ? GO:0030288 ... Q50964 N/A
    8655 1d9z:A (3.15) BS01 ATP ? GO:0003677 ... P56981 10601012
    8656 1daa:A (1.94) BS01 PLP 2.6.1.21 GO:0003824 ... P19938 7626635
    8657 1daa:B (1.94) BS01 PLP 2.6.1.21 GO:0003824 ... P19938 7626635
    8658 1dad:A (1.6) BS01 ADP 6.3.3.3 GO:0000287 ... P13000 7669756
    8659 1dae:A (1.7) BS01 IKT 6.3.3.3 GO:0000287 ... P13000 7669756
    8660 1daf:A (1.7) BS01 DSD 6.3.3.3 GO:0000287 ... P13000 7669756
    8661 1daf:A (1.7) BS02 ADP 6.3.3.3 GO:0000287 ... P13000 7669756
    8662 1dag:A (1.64) BS01 DSD 6.3.3.3 GO:0000287 ... P13000 7669756
    8663 1dag:A (1.64) BS02 ACP 6.3.3.3 GO:0000287 ... P13000 7669756
    8664 1dah:A (1.64) BS01 MN 6.3.3.3 GO:0000287 ... P13000 7669756
    8665 1dah:A (1.64) BS02 DNN 6.3.3.3 GO:0000287 ... P13000 7669756
    8666 1dah:A (1.64) BS03 ACP 6.3.3.3 GO:0000287 ... P13000 7669756
    8667 1dai:A (1.64) BS01 DSD 6.3.3.3 GO:0000287 ... P13000 7669756
    8668 1daj:A (2.3) BS01 NDP 1.5.1.3 GO:0003729 ... P16184 15299851
    8669 1daj:A (2.3) BS02 MOT 1.5.1.3 GO:0003729 ... P16184 15299851 MOAD: Ki=6.5nM
    8670 1dak:A (1.6) BS01 MG 6.3.3.3 GO:0000287 ... P13000 9576910
    8671 1dak:A (1.6) BS02 DPU 6.3.3.3 GO:0000287 ... P13000 9576910
    8672 1dak:A (1.6) BS03 ADP 6.3.3.3 GO:0000287 ... P13000 9576910
    8673 1dam:A (1.8) BS01 MG 6.3.3.3 GO:0000287 ... P13000 9865950
    8674 1dam:A (1.8) BS02 PO4 6.3.3.3 GO:0000287 ... P13000 9865950
    8675 1dam:A (1.8) BS03 ADP 6.3.3.3 GO:0000287 ... P13000 9865950
    8676 1dam:A (1.8) BS04 DTB 6.3.3.3 GO:0000287 ... P13000 9865950
    8677 1dan:H (2.0) BS01 0Z6 3.4.21.21 GO:0004252 ... P08709 8598903
    8678 1dan:H (2.0) BS02 CA 3.4.21.21 GO:0004252 ... P08709 8598903
    8679 1dan:L (2.0) BS01 BGC 3.4.21.21 GO:0005509 ... P08709 8598903
    8680 1dan:L (2.0) BS02 CA 3.4.21.21 GO:0005509 ... P08709 8598903
    8681 1dan:L (2.0) BS03 CA 3.4.21.21 GO:0005509 ... P08709 8598903
    8682 1dan:L (2.0) BS04 CA 3.4.21.21 GO:0005509 ... P08709 8598903
    8683 1dan:L (2.0) BS05 CA 3.4.21.21 GO:0005509 ... P08709 8598903
    8684 1dan:L (2.0) BS06 CA 3.4.21.21 GO:0005509 ... P08709 8598903
    8685 1dan:L (2.0) BS07 CA 3.4.21.21 GO:0005509 ... P08709 8598903
    8686 1dan:L (2.0) BS08 CA 3.4.21.21 GO:0005509 ... P08709 8598903
    8687 1dao:A (3.2) BS01 FAB 1.4.3.3 GO:0003884 ... P00371 9153426
    8688 1dao:B (3.2) BS01 FAB 1.4.3.3 GO:0003884 ... P00371 9153426
    8689 1dao:C (3.2) BS01 FAB 1.4.3.3 GO:0003884 ... P00371 9153426
    8690 1dao:D (3.2) BS01 FAB 1.4.3.3 GO:0003884 ... P00371 9153426
    8691 1dao:E (3.2) BS01 FAB 1.4.3.3 GO:0003884 ... P00371 9153426
    8692 1dao:F (3.2) BS01 FAB 1.4.3.3 GO:0003884 ... P00371 9153426
    8693 1dao:G (3.2) BS01 FAB 1.4.3.3 GO:0003884 ... P00371 9153426
    8694 1dao:H (3.2) BS01 FAB 1.4.3.3 GO:0003884 ... P00371 9153426
    8695 1dap:A (2.2) BS01 NDP 1.4.1.16 GO:0009089 ... P04964 8885833
    8696 1dap:B (2.2) BS01 ACT 1.4.1.16 GO:0009089 ... P04964 8885833
    8697 1dap:B (2.2) BS02 NDP 1.4.1.16 GO:0009089 ... P04964 8885833
    8698 1daq:A (-1.00) BS01 CA 3.2.1.176 GO:0000272 ... P0C2S5 11273698
    8699 1daq:A (-1.00) BS02 CA 3.2.1.176 GO:0000272 ... P0C2S5 11273698
    8700 1dar:A (2.4) BS01 GDP ? GO:0003746 ... Q5SHN5 8736554 MOAD: Kd=11uM
    8701 1dav:A (-1.00) BS01 CA 3.2.1.176 GO:0000272 ... P0C2S5 11273698
    8702 1dav:A (-1.00) BS02 CA 3.2.1.176 GO:0000272 ... P0C2S5 11273698
    8703 1daw:A (2.2) BS01 MG 2.7.11.1 GO:0004672 ... P28523 10581548
    8704 1daw:A (2.2) BS02 ANP 2.7.11.1 GO:0004672 ... P28523 10581548
    8705 1dax:A (-1.00) BS01 SF4 ? GO:0005506 ... P00210 9533888
    8706 1day:A (2.2) BS01 MG 2.7.11.1 GO:0004672 ... P28523 10581548
    8707 1day:A (2.2) BS02 GNP 2.7.11.1 GO:0004672 ... P28523 10581548
    8708 1daz:C (1.55) BS01 0Q4 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P03367 10429209
    8709 1daz:D (1.55) BS01 0Q4 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P03367 10429209
    8710 1db1:A (1.8) BS01 VDX ? GO:0003677 ... P11473 10678179 MOAD: Kd=0.55nM
    BindingDB: EC50=10nM, IC50=1.1nM, Kd=0.065nM
    8711 1db4:A (2.2) BS01 CA 3.1.1.4 GO:0004623 ... P14555 7664108
    8712 1db4:A (2.2) BS02 CA 3.1.1.4 GO:0004623 ... P14555 7664108
    8713 1db4:A (2.2) BS03 8IN 3.1.1.4 GO:0004623 ... P14555 7664108 BindingDB: IC50=57.0nM
    8714 1db5:A (2.8) BS01 CA 3.1.1.4 GO:0004623 ... P14555 7664108
    8715 1db5:A (2.8) BS02 CA 3.1.1.4 GO:0004623 ... P14555 7664108
    8716 1db5:A (2.8) BS03 6IN 3.1.1.4 GO:0004623 ... P14555 7664108 BindingDB: IC50=69000nM
    8717 1dbb:H (2.7) BS01 STR ? N/A P01868 8496956
    8718 1dbb:L (2.7) BS01 STR N/A N/A N/A 8496956
    8719 1dbf:A (1.3) BS01 SO4 5.4.99.5 GO:0004106 ... P19080 10818343
    8720 1dbf:A (1.3) BS02 SO4 5.4.99.5 GO:0004106 ... P19080 10818343
    8721 1dbf:A (1.3) BS03 GOL 5.4.99.5 GO:0004106 ... P19080 10818343
    8722 1dbf:A (1.3) BS04 GOL 5.4.99.5 GO:0004106 ... P19080 10818343
    8723 1dbf:A (1.3) BS05 GOL 5.4.99.5 GO:0004106 ... P19080 10818343
    8724 1dbf:A (1.3) BS06 SO4 5.4.99.5 GO:0004106 ... P19080 10818343
    8725 1dbf:B (1.3) BS01 SO4 5.4.99.5 GO:0004106 ... P19080 10818343
    8726 1dbf:B (1.3) BS02 SO4 5.4.99.5 GO:0004106 ... P19080 10818343
    8727 1dbf:B (1.3) BS03 SO4 5.4.99.5 GO:0004106 ... P19080 10818343
    8728 1dbf:B (1.3) BS04 GOL 5.4.99.5 GO:0004106 ... P19080 10818343
    8729 1dbf:C (1.3) BS01 SO4 5.4.99.5 GO:0004106 ... P19080 10818343
    8730 1dbf:C (1.3) BS02 SO4 5.4.99.5 GO:0004106 ... P19080 10818343
    8731 1dbf:C (1.3) BS03 GOL 5.4.99.5 GO:0004106 ... P19080 10818343
    8732 1dbg:A (1.7) BS01 MAN 4.2.2.19 N/A Q46079 10600383
    8733 1dbi:A (1.8) BS01 CA 3.4.21.- GO:0004252 ... Q45670 10588904
    8734 1dbi:A (1.8) BS02 CA 3.4.21.- GO:0004252 ... Q45670 10588904
    8735 1dbi:A (1.8) BS03 CA 3.4.21.- GO:0004252 ... Q45670 10588904
    8736 1dbj:H (2.7) BS01 AE2 ? N/A P01868 8413674
    8737 1dbk:H (3.0) BS01 ANO ? N/A P01868 8413674
    8738 1dbm:H (2.7) BS01 SIH ? N/A P01868 8413674
    8739 1dbm:L (2.7) BS01 SIH N/A N/A N/A 8413674
    8740 1dbn:A (2.75) BS01 BGC ? GO:0030246 ... P93248 10747930
    8741 1dbn:A (2.75) BS02 GAL ? GO:0030246 ... P93248 10747930
    8742 1dbn:A (2.75) BS03 SIA ? GO:0030246 ... P93248 10747930
    8743 1dbn:A (2.75) BS04 CA ? GO:0030246 ... P93248 10747930
    8744 1dbn:A (2.75) BS05 MN ? GO:0030246 ... P93248 10747930
    8745 1dbn:B (2.75) BS01 BGC ? GO:0030246 ... P93248 10747930
    8746 1dbn:B (2.75) BS02 GAL ? GO:0030246 ... P93248 10747930
    8747 1dbn:B (2.75) BS03 SIA ? GO:0030246 ... P93248 10747930
    8748 1dbn:B (2.75) BS04 CA ? GO:0030246 ... P93248 10747930
    8749 1dbn:B (2.75) BS05 MN ? GO:0030246 ... P93248 10747930
    8750 1dbo:A (1.7) BS01 MAN 4.2.2.19 N/A Q46079 10600383
    8751 1dbo:A (1.7) BS02 ASG 4.2.2.19 N/A Q46079 10600383
    8752 1dbo:A (1.7) BS03 GC4 4.2.2.19 N/A Q46079 10600383
    8753 1dbp:A (2.2) BS01 RIP ? GO:0005515 ... P02925 8157648
    8754 1dbr:A (2.4) BS01 MG 2.4.2.22
    2.4.2.8
    GO:0000287 ... Q26997 8836106
    8755 1dbr:B (2.4) BS01 MG 2.4.2.22
    2.4.2.8
    GO:0000287 ... Q26997 8836106
    8756 1dbr:D (2.4) BS01 MG 2.4.2.22
    2.4.2.8
    GO:0000287 ... Q26997 8836106
    8757 1dbt:A (2.4) BS01 U5P 4.1.1.23 GO:0004590 ... P25971 10681442 MOAD: Ki=0.46mM
    8758 1dbt:A (2.4) BS02 U5P 4.1.1.23 GO:0004590 ... P25971 10681442 MOAD: Ki=0.46mM
    8759 1dbt:B (2.4) BS01 U5P 4.1.1.23 GO:0004590 ... P25971 10681442 MOAD: Ki=0.46mM
    8760 1dbt:B (2.4) BS02 U5P 4.1.1.23 GO:0004590 ... P25971 10681442 MOAD: Ki=0.46mM
    8761 1dbt:C (2.4) BS01 U5P 4.1.1.23 GO:0004590 ... P25971 10681442 MOAD: Ki=0.46mM
    8762 1dbv:O (2.5) BS01 NAD 1.2.1.12 GO:0004365 ... P00362 9175858
    8763 1dbv:P (2.5) BS01 NAD 1.2.1.12 GO:0004365 ... P00362 9175858
    8764 1dbv:Q (2.5) BS01 NAD 1.2.1.12 GO:0004365 ... P00362 9175858
    8765 1dbv:R (2.5) BS01 NAD 1.2.1.12 GO:0004365 ... P00362 9175858
    8766 1dc1:A (1.7) BS01 dna 3.1.21.4 GO:0003677 ... P70985 11250198
    8767 1dc1:A (1.7) BS02 dna 3.1.21.4 GO:0003677 ... P70985 11250198
    8768 1dc1:B (1.7) BS01 dna 3.1.21.4 GO:0003677 ... P70985 11250198
    8769 1dc1:B (1.7) BS02 dna 3.1.21.4 GO:0003677 ... P70985 11250198
    8770 1dc4:A (2.5) BS01 G3P 1.2.1.12 GO:0004365 ... P0A9B2 10978154
    8771 1dc4:B (2.5) BS01 G3P 1.2.1.12 GO:0004365 ... P0A9B2 10978154
    8772 1dc6:A (2.0) BS01 NAD 1.2.1.12 GO:0004365 ... P0A9B2 10978154
    8773 1dc6:B (2.0) BS01 NAD 1.2.1.12 GO:0004365 ... P0A9B2 10978154
    8774 1dca:A (2.2) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 8399159
    8775 1dcb:A (2.1) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 8399159
    8776 1dcc:A (2.2) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 7664080
    8777 1dce:B (2.0) BS01 ZN 2.5.1.60 GO:0003824 ... Q08603 10745007
    8778 1dce:D (2.0) BS01 ZN 2.5.1.60 GO:0003824 ... Q08603 10745007
    8779 1dck:A (2.0) BS01 MN ? GO:0000160 ... P10958 10647182
    8780 1dck:B (2.0) BS01 MN ? GO:0000160 ... P10958 10647182
    8781 1dcm:B (3.0) BS01 MG ? GO:0000160 ... P10958 10647182
    8782 1dcn:D (2.3) BS01 AS1 4.3.2.1 GO:0003824 ... P24058 10029536
    8783 1dcp:A (2.3) BS01 HBI 4.2.1.96 GO:0003713 ... P61459 8897596
    8784 1dcp:B (2.3) BS01 HBI 4.2.1.96 GO:0003713 ... P61459 8897596
    8785 1dcp:C (2.3) BS01 HBI 4.2.1.96 GO:0003713 ... P61459 8897596
    8786 1dcp:D (2.3) BS01 HBI 4.2.1.96 GO:0003713 ... P61459 8897596
    8787 1dcp:E (2.3) BS01 HBI 4.2.1.96 GO:0003713 ... P61459 8897596
    8788 1dcp:F (2.3) BS01 HBI 4.2.1.96 GO:0003713 ... P61459 8897596
    8789 1dcp:G (2.3) BS01 HBI 4.2.1.96 GO:0003713 ... P61459 8897596
    8790 1dcp:H (2.3) BS01 HBI 4.2.1.96 GO:0003713 ... P61459 8897596
    8791 1dcq:A (2.1) BS01 ZN ? GO:0005096 ... Q7SIG6 10601011
    8792 1dct:A (2.8) BS01 dna 2.1.1.37 GO:0003677 ... P20589 7606780
    8793 1dct:A (2.8) BS02 dna 2.1.1.37 GO:0003677 ... P20589 7606780
    8794 1dct:A (2.8) BS03 dna 2.1.1.37 GO:0003677 ... P20589 7606780
    8795 1dct:A (2.8) BS04 dna 2.1.1.37 GO:0003677 ... P20589 7606780
    8796 1dct:B (2.8) BS01 dna 2.1.1.37 GO:0003677 ... P20589 7606780
    8797 1dct:B (2.8) BS02 dna 2.1.1.37 GO:0003677 ... P20589 7606780
    8798 1dct:B (2.8) BS03 dna 2.1.1.37 GO:0003677 ... P20589 7606780
    8799 1dcy:A (2.7) BS01 CA 3.1.1.4 GO:0004623 ... P14555 7664108
    8800 1dcy:A (2.7) BS02 CA 3.1.1.4 GO:0004623 ... P14555 7664108

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).