SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    883001 8syp:H (2.6) BS01 dna ? GO:0000786 ... Q16778 38267599
    883002 8syp:H (2.6) BS02 dna ? GO:0000786 ... Q16778 38267599
    883003 8sz2:A (2.01) BS01 peptide 3.2.2.22 GO:0017148 ... P09385 38467020
    883004 8sz2:B (2.01) BS01 peptide 3.2.2.22 GO:0017148 ... P09385 38467020
    883005 8sz3:A (2.32) BS01 X18 2.4.1.149 GO:0000139 ... Q9NY97 37988652
    883006 8sz3:B (2.32) BS01 X18 2.4.1.149 GO:0000139 ... Q9NY97 37988652
    883007 8sz6:A (1.65) BS01 ZKE 1.1.1.88 GO:0004420 ... P13702 38327055
    883008 8sz6:B (1.65) BS01 ZKE 1.1.1.88 GO:0004420 ... P13702 38327055
    883009 8sz6:B (1.65) BS02 XII 1.1.1.88 GO:0004420 ... P13702 38327055
    883010 8sz6:B (1.65) BS03 SO4 1.1.1.88 GO:0004420 ... P13702 38327055
    883011 8sz6:B (1.65) BS04 SO4 1.1.1.88 GO:0004420 ... P13702 38327055
    883012 8sz8:b (3.55) BS01 GDP 3.6.5.5 GO:0003924 ... Q05193 38663399
    883013 8sz8:b (3.55) BS02 MG 3.6.5.5 GO:0003924 ... Q05193 38663399
    883014 8sz8:c (3.55) BS01 GDP 3.6.5.5 GO:0003924 ... Q05193 38663399
    883015 8sz8:c (3.55) BS02 MG 3.6.5.5 GO:0003924 ... Q05193 38663399
    883016 8sz8:f (3.55) BS01 GDP 3.6.5.5 GO:0003924 ... Q05193 38663399
    883017 8sz8:f (3.55) BS02 MG 3.6.5.5 GO:0003924 ... Q05193 38663399
    883018 8sz8:g (3.55) BS01 GDP 3.6.5.5 GO:0003924 ... Q05193 38663399
    883019 8sz8:g (3.55) BS02 MG 3.6.5.5 GO:0003924 ... Q05193 38663399
    883020 8sza:A (2.75) BS01 CLR ? GO:0001530 ... Q92982 39667936
    883021 8sza:B (2.75) BS01 CLR ? GO:0001530 ... Q92982 39667936
    883022 8sza:C (2.75) BS01 CLR ? GO:0001530 ... Q92982 39667936
    883023 8sza:D (2.75) BS01 CLR ? GO:0001530 ... Q92982 39667936
    883024 8sza:E (2.75) BS01 CLR ? GO:0001530 ... Q92982 39667936
    883025 8sza:F (2.75) BS01 CLR ? GO:0001530 ... Q92982 39667936
    883026 8szc:C (3.06) BS01 ATP 7.6.2.- GO:0005524 ... O07550 37938578
    883027 8szc:C (3.06) BS02 HT1 7.6.2.- GO:0005524 ... O07550 37938578
    883028 8szc:D (3.06) BS01 ATP 7.6.2.- GO:0005524 ... O07549 37938578
    883029 8szd:A (1.25) BS01 MG 1.5.1.3 GO:0004146 ... A0A3N4BLI0 N/A
    883030 8sze:A (2.5) BS01 TOP 1.5.1.3 GO:0004146 ... A0A3N4BLI0 N/A
    883031 8sze:B (2.5) BS01 TOP 1.5.1.3 GO:0004146 ... A0A3N4BLI0 N/A
    883032 8szf:A (2.8) BS01 TRP ? GO:0004930 ... P41180 38326620
    883033 8szf:A (2.8) BS02 CA ? GO:0004930 ... P41180 38326620
    883034 8szf:A (2.8) BS03 YP4 ? GO:0004930 ... P41180 38326620
    883035 8szf:B (2.8) BS01 TRP ? GO:0004930 ... P41180 38326620
    883036 8szf:B (2.8) BS02 CA ? GO:0004930 ... P41180 38326620
    883037 8szf:B (2.8) BS03 YP4 ? GO:0004930 ... P41180 38326620
    883038 8szg:A (3.6) BS01 YP4 ? GO:0004930 ... P41180 38326620
    883039 8szg:A (3.6) BS02 CA ? GO:0004930 ... P41180 38326620
    883040 8szg:A (3.6) BS03 TRP ? GO:0004930 ... P41180 38326620
    883041 8szg:B (3.6) BS01 CLR ? GO:0004930 ... P41180 38326620
    883042 8szg:B (3.6) BS02 TRP ? GO:0004930 ... P41180 38326620
    883043 8szg:B (3.6) BS03 YP4 ? GO:0004930 ... P41180 38326620
    883044 8szh:A (3.1) BS01 YP4 ? GO:0004930 ... P41180 38326620
    883045 8szh:A (3.1) BS02 CA ? GO:0004930 ... P41180 38326620
    883046 8szh:A (3.1) BS03 TRP ? GO:0004930 ... P41180 38326620
    883047 8szh:B (3.1) BS01 YP4 ? GO:0004930 ... P41180 38326620
    883048 8szh:B (3.1) BS02 CA ? GO:0004930 ... P41180 38326620
    883049 8szh:B (3.1) BS03 TRP ? GO:0004930 ... P41180 38326620
    883050 8szi:A (3.5) BS01 CA ? GO:0004930 ... P41180 38326620
    883051 8szi:A (3.5) BS02 TRP ? GO:0004930 ... P41180 38326620
    883052 8szi:A (3.5) BS03 TRP ? GO:0004930 ... P41180 38326620
    883053 8szi:B (3.5) BS01 CLR ? GO:0004930 ... P41180 38326620
    883054 8szi:B (3.5) BS02 CA ? GO:0004930 ... P41180 38326620
    883055 8szi:B (3.5) BS03 TRP ? GO:0004930 ... P41180 38326620
    883056 8szj:A (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    883057 8szj:B (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    883058 8szj:C (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    883059 8szj:D (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    883060 8szj:E (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    883061 8szj:F (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    883062 8szj:G (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    883063 8szj:H (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    883064 8szj:I (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    883065 8szj:J (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    883066 8szj:K (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    883067 8szj:L (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    883068 8szm:A (2.35) BS01 X3O N/A GO:0004176 ... C3TLT2 39221504
    883069 8szm:G (2.35) BS01 X3O N/A GO:0004176 ... C3TLT2 39221504
    883070 8szm:X (2.35) BS01 X3O N/A GO:0004176 ... C3TLT2 39221504
    883071 8szm:Y (2.35) BS01 X3O N/A GO:0004176 ... C3TLT2 39221504
    883072 8szm:Z (2.35) BS01 X3O N/A GO:0004176 ... C3TLT2 39221504
    883073 8szm:a (2.35) BS01 X3O N/A GO:0004176 ... C3TLT2 39221504
    883074 8szn:H (2.33) BS01 X3O N/A GO:0004176 ... Q9JZ38 39221504
    883075 8szn:I (2.33) BS01 X3O N/A GO:0004176 ... Q9JZ38 39221504
    883076 8szn:J (2.33) BS01 X3O N/A GO:0004176 ... Q9JZ38 39221504
    883077 8szn:K (2.33) BS01 X3O N/A GO:0004176 ... Q9JZ38 39221504
    883078 8szn:L (2.33) BS01 X3O N/A GO:0004176 ... Q9JZ38 39221504
    883079 8szn:L (2.33) BS02 X3O N/A GO:0004176 ... Q9JZ38 39221504
    883080 8szn:M (2.33) BS01 X3O N/A GO:0004176 ... Q9JZ38 39221504
    883081 8szn:M (2.33) BS02 X3O N/A GO:0004176 ... Q9JZ38 39221504
    883082 8szn:N (2.33) BS01 X3O N/A GO:0004176 ... Q9JZ38 39221504
    883083 8szn:N (2.33) BS02 X3O N/A GO:0004176 ... Q9JZ38 39221504
    883084 8szn:V (2.33) BS01 X3O N/A GO:0004176 ... Q9JZ38 39221504
    883085 8szn:V (2.33) BS02 X3O N/A GO:0004176 ... Q9JZ38 39221504
    883086 8szn:W (2.33) BS01 X3O N/A GO:0004176 ... Q9JZ38 39221504
    883087 8szn:W (2.33) BS02 X3O N/A GO:0004176 ... Q9JZ38 39221504
    883088 8szn:X (2.33) BS01 X3O N/A GO:0004176 ... Q9JZ38 39221504
    883089 8szn:Y (2.33) BS01 X3O N/A GO:0004176 ... Q9JZ38 39221504
    883090 8szn:Z (2.33) BS01 X3O N/A GO:0004176 ... Q9JZ38 39221504
    883091 8szn:Z (2.33) BS02 X3O N/A GO:0004176 ... Q9JZ38 39221504
    883092 8szn:a (2.33) BS01 X3O N/A GO:0004176 ... Q9JZ38 39221504
    883093 8szn:a (2.33) BS02 X3O N/A GO:0004176 ... Q9JZ38 39221504
    883094 8szn:b (2.33) BS01 X3O N/A GO:0004176 ... Q9JZ38 39221504
    883095 8szn:b (2.33) BS02 X3O N/A GO:0004176 ... Q9JZ38 39221504
    883096 8szo:A (2.5) BS01 MN N/A GO:0030246 ... N/A 28693997
    883097 8szo:A (2.5) BS02 CA N/A GO:0030246 ... N/A 28693997
    883098 8szo:A (2.5) BS03 MMA N/A GO:0030246 ... N/A 28693997
    883099 8szp:A (2.62) BS01 ADP 3.6.4.13 GO:0003676 ... Q08211 37860960
    883100 8szp:A (2.62) BS02 MG 3.6.4.13 GO:0003676 ... Q08211 37860960
    883101 8szp:B (2.62) BS01 ADP 3.6.4.13 GO:0003676 ... Q08211 37860960
    883102 8szp:B (2.62) BS02 MG 3.6.4.13 GO:0003676 ... Q08211 37860960
    883103 8szq:A (2.711) BS01 ADP 3.6.4.13 GO:0003676 ... N/A 37860960
    883104 8szq:A (2.711) BS02 MG 3.6.4.13 GO:0003676 ... N/A 37860960
    883105 8szr:A (2.97) BS01 ADP 3.6.4.13 GO:0003676 ... A0A8I3RTG4 37860960
    883106 8szr:A (2.97) BS02 MG 3.6.4.13 GO:0003676 ... A0A8I3RTG4 37860960
    883107 8szs:A (2.38) BS01 GDP 3.6.4.13 GO:0003676 ... N/A 37625785
    883108 8szs:A (2.38) BS02 MG 3.6.4.13 GO:0003676 ... N/A 37625785
    883109 8szt:A (2.5) BS01 ZN ? GO:0004407 ... R8YPJ7 37624144
    883110 8szt:B (2.5) BS01 ZN ? GO:0004407 ... R8YPJ7 37624144
    883111 8szt:C (2.5) BS01 ZN ? GO:0004407 ... R8YPJ7 37624144
    883112 8szt:D (2.5) BS01 ZN ? GO:0004407 ... R8YPJ7 37624144
    883113 8szu:A (1.75) BS01 X4U ? GO:0004407 ... R8YPJ7 37624144
    883114 8szu:A (1.75) BS02 X4U ? GO:0004407 ... R8YPJ7 37624144
    883115 8szu:A (1.75) BS03 ZN ? GO:0004407 ... R8YPJ7 37624144
    883116 8szu:A (1.75) BS04 X4U ? GO:0004407 ... R8YPJ7 37624144
    883117 8szu:B (1.75) BS01 X4U ? GO:0004407 ... R8YPJ7 37624144
    883118 8szu:B (1.75) BS02 X4U ? GO:0004407 ... R8YPJ7 37624144
    883119 8szu:B (1.75) BS03 X4U ? GO:0004407 ... R8YPJ7 37624144
    883120 8szu:B (1.75) BS04 ZN ? GO:0004407 ... R8YPJ7 37624144
    883121 8szv:A (2.2) BS01 X1D ? GO:0003677 ... O75469 37729916
    883122 8szw:I (3.63) BS01 dna N/A GO:0000345 ... P0A8V2 39779919
    883123 8szw:I (3.63) BS02 dna N/A GO:0000345 ... P0A8V2 39779919
    883124 8szw:J (3.63) BS01 dna N/A GO:0000287 ... P0A8T7 39779919
    883125 8szw:J (3.63) BS02 dna N/A GO:0000287 ... P0A8T7 39779919
    883126 8szw:J (3.63) BS03 MG N/A GO:0000287 ... P0A8T7 39779919
    883127 8szw:J (3.63) BS04 ZN N/A GO:0000287 ... P0A8T7 39779919
    883128 8szw:J (3.63) BS05 ZN N/A GO:0000287 ... P0A8T7 39779919
    883129 8t00:J (4.69) BS01 dna N/A GO:0000287 ... P0A8T7 39779919
    883130 8t00:J (4.69) BS02 dna N/A GO:0000287 ... P0A8T7 39779919
    883131 8t00:J (4.69) BS03 MG N/A GO:0000287 ... P0A8T7 39779919
    883132 8t00:J (4.69) BS04 ZN N/A GO:0000287 ... P0A8T7 39779919
    883133 8t00:J (4.69) BS05 ZN N/A GO:0000287 ... P0A8T7 39779919
    883134 8t02:I (3.79) BS01 dna N/A GO:0000345 ... P0A8V2 39779919
    883135 8t02:J (3.79) BS01 dna N/A GO:0000287 ... P0A8T7 39779919
    883136 8t02:J (3.79) BS02 dna N/A GO:0000287 ... P0A8T7 39779919
    883137 8t02:J (3.79) BS03 MG N/A GO:0000287 ... P0A8T7 39779919
    883138 8t02:J (3.79) BS04 ZN N/A GO:0000287 ... P0A8T7 39779919
    883139 8t02:J (3.79) BS05 ZN N/A GO:0000287 ... P0A8T7 39779919
    883140 8t03:A (2.72) BS01 ZN ? GO:0000139 ... Q9D1N4 37770716
    883141 8t03:A (2.72) BS02 CLR ? GO:0000139 ... Q9D1N4 37770716
    883142 8t03:A (2.72) BS03 LBN ? GO:0000139 ... Q9D1N4 37770716
    883143 8t03:B (2.72) BS01 ZN ? GO:0000139 ... Q9D1N4 37770716
    883144 8t03:B (2.72) BS02 CLR ? GO:0000139 ... Q9D1N4 37770716
    883145 8t03:B (2.72) BS03 LBN ? GO:0000139 ... Q9D1N4 37770716
    883146 8t04:A (2.98) BS01 ZN ? GO:0000139 ... Q9D1N4 37770716
    883147 8t04:A (2.98) BS02 CLR ? GO:0000139 ... Q9D1N4 37770716
    883148 8t04:A (2.98) BS03 LBN ? GO:0000139 ... Q9D1N4 37770716
    883149 8t04:B (2.98) BS01 ZN ? GO:0000139 ... Q9D1N4 37770716
    883150 8t04:B (2.98) BS02 CLR ? GO:0000139 ... Q9D1N4 37770716
    883151 8t04:B (2.98) BS03 LBN ? GO:0000139 ... Q9D1N4 37770716
    883152 8t05:A (3.22) BS01 ZN N/A GO:0005886 ... A0AAJ6N6K3 37770716
    883153 8t05:A (3.22) BS02 CLR N/A GO:0005886 ... A0AAJ6N6K3 37770716
    883154 8t05:A (3.22) BS03 LBN N/A GO:0005886 ... A0AAJ6N6K3 37770716
    883155 8t05:B (3.22) BS01 ZN N/A GO:0005886 ... A0AAJ6N6K3 37770716
    883156 8t05:B (3.22) BS02 CLR N/A GO:0005886 ... A0AAJ6N6K3 37770716
    883157 8t05:B (3.22) BS03 LBN N/A GO:0005886 ... A0AAJ6N6K3 37770716
    883158 8t06:A (3.32) BS01 ZN ? GO:0000139 ... Q9D1N4 37770716
    883159 8t06:B (3.32) BS01 ZN ? GO:0000139 ... Q9D1N4 37770716
    883160 8t07:A (3.38) BS01 ZN ? GO:0000139 ... Q9D1N4 37770716
    883161 8t07:B (3.38) BS01 ZN ? GO:0000139 ... Q9D1N4 37770716
    883162 8t09:A (2.15) BS01 XHZ ? N/A O00522 37974623
    883163 8t09:B (2.15) BS01 MG 3.6.5.2 GO:0003924 ... P61224 37974623
    883164 8t09:B (2.15) BS02 GNP 3.6.5.2 GO:0003924 ... P61224 37974623
    883165 8t0c:A (3.5) BS01 NKN ? GO:0001774 ... O35433 38698206
    883166 8t0c:B (3.5) BS01 NKN ? GO:0001774 ... O35433 38698206
    883167 8t0c:C (3.5) BS01 NKN ? GO:0001774 ... O35433 38698206
    883168 8t0c:D (3.5) BS01 NKN ? GO:0001774 ... O35433 38698206
    883169 8t0e:A (3.3) BS01 8IJ ? GO:0001774 ... O35433 38698206
    883170 8t0e:B (3.3) BS01 8IJ ? GO:0001774 ... O35433 38698206
    883171 8t0e:C (3.3) BS01 8IJ ? GO:0001774 ... O35433 38698206
    883172 8t0e:D (3.3) BS01 8IJ ? GO:0001774 ... O35433 38698206
    883173 8t0f:A (2.61) BS01 dna N/A GO:0003677 ... O95948 39426953
    883174 8t0f:A (2.61) BS02 dna N/A GO:0003677 ... O95948 39426953
    883175 8t0k:b (3.58) BS01 GDP 3.6.5.5 GO:0003723 ... Q05193 38663399
    883176 8t0k:c (3.58) BS01 GDP 3.6.5.5 GO:0003723 ... Q05193 38663399
    883177 8t0k:c (3.58) BS02 MG 3.6.5.5 GO:0003723 ... Q05193 38663399
    883178 8t0k:f (3.58) BS01 GDP 3.6.5.5 GO:0003723 ... Q05193 38663399
    883179 8t0k:f (3.58) BS02 MG 3.6.5.5 GO:0003723 ... Q05193 38663399
    883180 8t0k:g (3.58) BS01 GDP 3.6.5.5 GO:0003723 ... Q05193 38663399
    883181 8t0l:F (3.62) BS01 ADP N/A GO:0001000 ... P60240 39779919
    883182 8t0l:F (3.62) BS02 AF3 N/A GO:0001000 ... P60240 39779919
    883183 8t0l:J (3.62) BS01 dna N/A GO:0000287 ... P0A8T7 39779919
    883184 8t0l:J (3.62) BS02 MG N/A GO:0000287 ... P0A8T7 39779919
    883185 8t0l:J (3.62) BS03 ZN N/A GO:0000287 ... P0A8T7 39779919
    883186 8t0l:J (3.62) BS04 ZN N/A GO:0000287 ... P0A8T7 39779919
    883187 8t0n:A (1.86) BS01 Y0B 1.2.1.19
    1.2.1.28
    1.2.1.3
    1.2.1.36
    GO:0001523 ... P00352 38364885
    883188 8t0n:A (1.86) BS02 NAD 1.2.1.19
    1.2.1.28
    1.2.1.3
    1.2.1.36
    GO:0001523 ... P00352 38364885
    883189 8t0p:A (1.73) BS01 peptide ? N/A P53298 37983946
    883190 8t0p:B (1.73) BS01 peptide ? N/A P38313 37983946
    883191 8t0q:A () BS01 B12 N/A N/A N/A N/A
    883192 8t0q:B () BS01 B12 N/A N/A N/A N/A
    883193 8t0q:C () BS01 PLP N/A N/A N/A N/A
    883194 8t0q:D () BS01 PLP N/A N/A N/A N/A
    883195 8t0r:b (3.97) BS01 GDP 3.6.5.5 GO:0003723 ... Q05193 38663399
    883196 8t0r:c (3.97) BS01 GDP 3.6.5.5 GO:0003723 ... Q05193 38663399
    883197 8t0r:c (3.97) BS02 MG 3.6.5.5 GO:0003723 ... Q05193 38663399
    883198 8t0r:f (3.97) BS01 GDP 3.6.5.5 GO:0003723 ... Q05193 38663399
    883199 8t0r:f (3.97) BS02 MG 3.6.5.5 GO:0003723 ... Q05193 38663399
    883200 8t0r:g (3.97) BS01 GDP 3.6.5.5 GO:0003723 ... Q05193 38663399

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).