SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    898001 8w8o:D (2.512) BS07 MG N/A GO:0000287 ... Q8RQE8 38990947
    898002 8w8o:F (2.512) BS01 dna N/A GO:0003677 ... Q5SKW1 38990947
    898003 8w8o:F (2.512) BS02 dna N/A GO:0003677 ... Q5SKW1 38990947
    898004 8w8o:F (2.512) BS03 MG N/A GO:0003677 ... Q5SKW1 38990947
    898005 8w8p:B (3.165) BS01 MG N/A GO:0000428 ... Q5SHR6 38990947
    898006 8w8p:C (3.165) BS01 dna N/A GO:0000428 ... Q8RQE9 38990947
    898007 8w8p:C (3.165) BS02 dna N/A GO:0000428 ... Q8RQE9 38990947
    898008 8w8p:C (3.165) BS03 rna N/A GO:0000428 ... Q8RQE9 38990947
    898009 8w8p:D (3.165) BS01 dna N/A GO:0000287 ... Q8RQE8 38990947
    898010 8w8p:D (3.165) BS02 dna N/A GO:0000287 ... Q8RQE8 38990947
    898011 8w8p:D (3.165) BS03 rna N/A GO:0000287 ... Q8RQE8 38990947
    898012 8w8p:D (3.165) BS04 ZN N/A GO:0000287 ... Q8RQE8 38990947
    898013 8w8p:D (3.165) BS05 ZN N/A GO:0000287 ... Q8RQE8 38990947
    898014 8w8p:D (3.165) BS06 MG N/A GO:0000287 ... Q8RQE8 38990947
    898015 8w8p:D (3.165) BS07 MG N/A GO:0000287 ... Q8RQE8 38990947
    898016 8w8p:D (3.165) BS08 2TM N/A GO:0000287 ... Q8RQE8 38990947
    898017 8w8p:F (3.165) BS01 dna N/A GO:0003677 ... Q5SKW1 38990947
    898018 8w8p:F (3.165) BS02 dna N/A GO:0003677 ... Q5SKW1 38990947
    898019 8w8p:F (3.165) BS03 MG N/A GO:0003677 ... Q5SKW1 38990947
    898020 8w91:b (2.12) BS01 FE N/A GO:0004322 ... A0A173CSP7 N/A
    898021 8w91:b (2.12) BS02 FE N/A GO:0004322 ... A0A173CSP7 N/A
    898022 8w92:A (2.12) BS01 FE N/A GO:0004322 ... P02794 N/A
    898023 8w92:A (2.12) BS02 FE N/A GO:0004322 ... P02794 N/A
    898024 8w93:b (2.09) BS01 FE N/A GO:0004322 ... A0A173CSP7 N/A
    898025 8w93:b (2.09) BS02 FE N/A GO:0004322 ... A0A173CSP7 N/A
    898026 8w94:b (2.3) BS01 FE N/A GO:0004322 ... A0A173CSP7 N/A
    898027 8w94:b (2.3) BS02 FE N/A GO:0004322 ... A0A173CSP7 N/A
    898028 8w94:b (2.3) BS03 FE N/A GO:0004322 ... A0A173CSP7 N/A
    898029 8w95:b (2.03) BS01 FE N/A GO:0004322 ... A0A173CSP7 N/A
    898030 8w95:b (2.03) BS02 FE N/A GO:0004322 ... A0A173CSP7 N/A
    898031 8w95:b (2.03) BS03 FE N/A GO:0004322 ... A0A173CSP7 N/A
    898032 8w95:b (2.03) BS04 OXY N/A GO:0004322 ... A0A173CSP7 N/A
    898033 8w98:A (1.9) BS01 QGL N/A N/A N/A 39642872
    898034 8w9a:A (2.7) BS01 UEX 2.7.11.1
    2.7.1.137
    2.7.1.153
    GO:0001525 ... P42336 38582077
    898035 8w9b:A (3.0) BS01 UJ3 2.7.11.1
    2.7.1.137
    2.7.1.153
    GO:0001525 ... P42336 38582077
    898036 8w9c:B (3.3) BS01 ZN 3.5.1.98 GO:0000082 ... P32561 38598631
    898037 8w9c:E (3.3) BS01 ZN ? GO:0000118 ... Q04779 38598631
    898038 8w9c:E (3.3) BS02 ZN ? GO:0000118 ... Q04779 38598631
    898039 8w9c:E (3.3) BS03 ZN ? GO:0000118 ... Q04779 38598631
    898040 8w9c:F (3.3) BS01 ZN ? GO:0000118 ... Q04779 38598631
    898041 8w9c:F (3.3) BS02 ZN ? GO:0000118 ... Q04779 38598631
    898042 8w9d:B (3.9) BS01 peptide 3.5.1.98 GO:0000082 ... P32561 38598631
    898043 8w9d:B (3.9) BS02 ZN 3.5.1.98 GO:0000082 ... P32561 38598631
    898044 8w9d:E (3.9) BS01 ZN ? GO:0000118 ... Q04779 38598631
    898045 8w9d:E (3.9) BS02 ZN ? GO:0000118 ... Q04779 38598631
    898046 8w9d:E (3.9) BS03 ZN ? GO:0000118 ... Q04779 38598631
    898047 8w9d:F (3.9) BS01 ZN ? GO:0000118 ... Q04779 38598631
    898048 8w9d:F (3.9) BS02 ZN ? GO:0000118 ... Q04779 38598631
    898049 8w9d:a (3.9) BS01 dna ? GO:0000786 ... P68431 38598631
    898050 8w9d:a (3.9) BS02 dna ? GO:0000786 ... P68431 38598631
    898051 8w9d:b (3.9) BS01 dna ? GO:0000781 ... P62805 38598631
    898052 8w9d:b (3.9) BS02 dna ? GO:0000781 ... P62805 38598631
    898053 8w9d:c (3.9) BS01 dna ? GO:0000786 ... P04908 38598631
    898054 8w9d:c (3.9) BS02 dna ? GO:0000786 ... P04908 38598631
    898055 8w9d:d (3.9) BS01 dna ? GO:0000786 ... O60814 38598631
    898056 8w9d:d (3.9) BS02 dna ? GO:0000786 ... O60814 38598631
    898057 8w9d:e (3.9) BS01 dna ? GO:0000786 ... P68431 38598631
    898058 8w9d:e (3.9) BS02 dna ? GO:0000786 ... P68431 38598631
    898059 8w9d:f (3.9) BS01 dna ? GO:0000781 ... P62805 38598631
    898060 8w9d:f (3.9) BS02 dna ? GO:0000781 ... P62805 38598631
    898061 8w9d:g (3.9) BS01 dna ? GO:0000786 ... P04908 38598631
    898062 8w9d:g (3.9) BS02 dna ? GO:0000786 ... P04908 38598631
    898063 8w9d:h (3.9) BS01 dna ? GO:0000786 ... O60814 38598631
    898064 8w9d:h (3.9) BS02 dna ? GO:0000786 ... O60814 38598631
    898065 8w9e:B (3.6) BS01 ZN 3.5.1.98 GO:0000082 ... P32561 38598631
    898066 8w9e:E (3.6) BS01 ZN ? GO:0000118 ... Q04779 38598631
    898067 8w9e:E (3.6) BS02 ZN ? GO:0000118 ... Q04779 38598631
    898068 8w9e:E (3.6) BS03 ZN ? GO:0000118 ... Q04779 38598631
    898069 8w9e:E (3.6) BS04 ZN ? GO:0000118 ... Q04779 38598631
    898070 8w9e:F (3.6) BS01 ZN ? GO:0000118 ... Q04779 38598631
    898071 8w9e:F (3.6) BS02 ZN ? GO:0000118 ... Q04779 38598631
    898072 8w9e:a (3.6) BS01 dna ? GO:0000786 ... P68431 38598631
    898073 8w9e:a (3.6) BS02 dna ? GO:0000786 ... P68431 38598631
    898074 8w9e:b (3.6) BS01 dna ? GO:0000781 ... P62805 38598631
    898075 8w9e:b (3.6) BS02 dna ? GO:0000781 ... P62805 38598631
    898076 8w9e:c (3.6) BS01 dna ? GO:0000786 ... P04908 38598631
    898077 8w9e:c (3.6) BS02 dna ? GO:0000786 ... P04908 38598631
    898078 8w9e:d (3.6) BS01 dna ? GO:0000786 ... O60814 38598631
    898079 8w9e:d (3.6) BS02 dna ? GO:0000786 ... O60814 38598631
    898080 8w9e:e (3.6) BS01 dna ? GO:0000786 ... P68431 38598631
    898081 8w9e:e (3.6) BS02 dna ? GO:0000786 ... P68431 38598631
    898082 8w9e:f (3.6) BS01 dna ? GO:0000781 ... P62805 38598631
    898083 8w9e:f (3.6) BS02 dna ? GO:0000781 ... P62805 38598631
    898084 8w9e:g (3.6) BS01 dna ? GO:0000786 ... P04908 38598631
    898085 8w9e:g (3.6) BS02 dna ? GO:0000786 ... P04908 38598631
    898086 8w9e:h (3.6) BS01 dna ? GO:0000786 ... O60814 38598631
    898087 8w9f:B (4.4) BS01 ZN 3.5.1.98 GO:0000082 ... P32561 38598631
    898088 8w9f:E (4.4) BS01 ZN ? GO:0000118 ... Q04779 38598631
    898089 8w9f:E (4.4) BS02 ZN ? GO:0000118 ... Q04779 38598631
    898090 8w9f:E (4.4) BS03 ZN ? GO:0000118 ... Q04779 38598631
    898091 8w9f:F (4.4) BS01 ZN ? GO:0000118 ... Q04779 38598631
    898092 8w9f:F (4.4) BS02 ZN ? GO:0000118 ... Q04779 38598631
    898093 8w9f:G (4.4) BS01 dna ? GO:0000122 ... Q12432 38598631
    898094 8w9f:a (4.4) BS01 dna ? GO:0000786 ... P68431 38598631
    898095 8w9f:a (4.4) BS02 dna ? GO:0000786 ... P68431 38598631
    898096 8w9f:b (4.4) BS01 dna ? GO:0000781 ... P62805 38598631
    898097 8w9f:b (4.4) BS02 dna ? GO:0000781 ... P62805 38598631
    898098 8w9f:c (4.4) BS01 dna ? GO:0000786 ... P04908 38598631
    898099 8w9f:c (4.4) BS02 dna ? GO:0000786 ... P04908 38598631
    898100 8w9f:d (4.4) BS01 dna ? GO:0000786 ... O60814 38598631
    898101 8w9f:d (4.4) BS02 dna ? GO:0000786 ... O60814 38598631
    898102 8w9f:e (4.4) BS01 dna ? GO:0000786 ... P68431 38598631
    898103 8w9f:e (4.4) BS02 dna ? GO:0000786 ... P68431 38598631
    898104 8w9f:f (4.4) BS01 dna ? GO:0000781 ... P62805 38598631
    898105 8w9f:f (4.4) BS02 dna ? GO:0000781 ... P62805 38598631
    898106 8w9f:g (4.4) BS01 dna ? GO:0000786 ... P04908 38598631
    898107 8w9f:g (4.4) BS02 dna ? GO:0000786 ... P04908 38598631
    898108 8w9f:h (4.4) BS01 dna ? GO:0000786 ... O60814 38598631
    898109 8w9f:h (4.4) BS02 dna ? GO:0000786 ... O60814 38598631
    898110 8w9g:A (2.6) BS01 5PT N/A GO:0005198 ... P03147 N/A
    898111 8w9g:A (2.6) BS02 5PT N/A GO:0005198 ... P03147 N/A
    898112 8w9g:B (2.6) BS01 5PT N/A GO:0005198 ... P03147 N/A
    898113 8w9g:C (2.6) BS01 5PT N/A GO:0005198 ... P03147 N/A
    898114 8w9g:C (2.6) BS02 5PT N/A GO:0005198 ... P03147 N/A
    898115 8w9g:D (2.6) BS01 5PT N/A GO:0005198 ... P03147 N/A
    898116 8w9g:E (2.6) BS01 5PT N/A GO:0005198 ... P03147 N/A
    898117 8w9g:E (2.6) BS02 5PT N/A GO:0005198 ... P03147 N/A
    898118 8w9g:F (2.6) BS01 5PT N/A GO:0005198 ... P03147 N/A
    898119 8w9i:A (2.45) BS01 W2H N/A GO:0000166 ... Q9I502 N/A
    898120 8w9i:A (2.45) BS02 MG N/A GO:0000166 ... Q9I502 N/A
    898121 8w9i:B (2.45) BS01 W2H N/A GO:0000166 ... Q9I502 N/A
    898122 8w9i:B (2.45) BS02 MG N/A GO:0000166 ... Q9I502 N/A
    898123 8w9i:B (2.45) BS03 MG N/A GO:0000166 ... Q9I502 N/A
    898124 8w9m:C (3.1) BS01 ATP ? GO:0005524 ... Q8YZ76 38457518
    898125 8w9m:C (3.1) BS02 MG ? GO:0005524 ... Q8YZ76 38457518
    898126 8w9m:C (3.1) BS03 ATP ? GO:0005524 ... Q8YZ76 38457518
    898127 8w9m:D (3.1) BS01 ATP ? GO:0005524 ... Q8YZ75 38457518
    898128 8w9m:D (3.1) BS02 ATP ? GO:0005524 ... Q8YZ75 38457518
    898129 8w9m:D (3.1) BS03 MG ? GO:0005524 ... Q8YZ75 38457518
    898130 8w9o:A (2.8) BS01 K ? GO:0005886 ... Q84TI7 38335958
    898131 8w9o:A (2.8) BS02 K ? GO:0005886 ... Q84TI7 38335958
    898132 8w9o:B (2.8) BS01 K ? GO:0005886 ... Q84TI7 38335958
    898133 8w9o:B (2.8) BS02 K ? GO:0005886 ... Q84TI7 38335958
    898134 8w9p:R (5.7) BS01 peptide ? N/A B4Y048 38480794
    898135 8w9p:S (5.7) BS01 peptide ? N/A B4Y048 38480794
    898136 8w9p:T (5.7) BS01 peptide ? N/A B4Y048 38480794
    898137 8w9p:U (5.7) BS01 peptide ? N/A B4Y048 38480794
    898138 8w9p:V (5.7) BS01 peptide ? N/A B4Y048 38480794
    898139 8w9p:V (5.7) BS02 peptide ? N/A B4Y048 38480794
    898140 8w9p:W (5.7) BS01 peptide ? N/A B4Y048 38480794
    898141 8w9q:R (5.7) BS01 peptide ? N/A B4Y048 38480794
    898142 8w9q:S (5.7) BS01 peptide ? N/A B4Y048 38480794
    898143 8w9q:S (5.7) BS02 peptide ? N/A B4Y048 38480794
    898144 8w9q:T (5.7) BS01 peptide ? N/A B4Y048 38480794
    898145 8w9u:A (1.85) BS01 SAH N/A GO:0001510 ... O31590 N/A
    898146 8w9u:B (1.85) BS01 SAH N/A GO:0001510 ... O31590 N/A
    898147 8w9v:A (2.9) BS01 K ? GO:0005886 ... A0A3B6RK40 38335958
    898148 8w9v:A (2.9) BS02 K ? GO:0005886 ... A0A3B6RK40 38335958
    898149 8w9v:A (2.9) BS03 K ? GO:0005886 ... A0A3B6RK40 38335958
    898150 8w9v:B (2.9) BS01 K ? GO:0005886 ... A0A3B6RK40 38335958
    898151 8w9v:B (2.9) BS02 K ? GO:0005886 ... A0A3B6RK40 38335958
    898152 8w9v:B (2.9) BS03 K ? GO:0005886 ... A0A3B6RK40 38335958
    898153 8w9w:A (3.74) BS01 UJO 2.7.8.- GO:0016780 ... Q96LT4 38388831
    898154 8w9w:A (3.74) BS02 OPE 2.7.8.- GO:0016780 ... Q96LT4 38388831
    898155 8w9w:B (3.74) BS01 UJO 2.7.8.- GO:0016780 ... Q96LT4 38388831
    898156 8w9w:B (3.74) BS02 OPE 2.7.8.- GO:0016780 ... Q96LT4 38388831
    898157 8w9w:C (3.74) BS01 UJO 2.7.8.- GO:0016780 ... Q96LT4 38388831
    898158 8w9w:C (3.74) BS02 OPE 2.7.8.- GO:0016780 ... Q96LT4 38388831
    898159 8w9w:D (3.74) BS01 UJO 2.7.8.- GO:0016780 ... Q96LT4 38388831
    898160 8w9w:E (3.74) BS01 UJO 2.7.8.- GO:0016780 ... Q96LT4 38388831
    898161 8w9w:F (3.74) BS01 UJO 2.7.8.- GO:0016780 ... Q96LT4 38388831
    898162 8w9w:F (3.74) BS02 OPE 2.7.8.- GO:0016780 ... Q96LT4 38388831
    898163 8w9z:B (3.0) BS01 ZN 2.7.7.6 GO:0000428 ... P06271 38428393
    898164 8w9z:C (3.0) BS01 MG 2.7.7.6 GO:0000287 ... A0A140G1Q3 38428393
    898165 8w9z:G (3.0) BS01 FE 1.15.1.1 GO:0004784 ... A0A1S4CKK0 38428393
    898166 8w9z:L (3.0) BS01 FE 1.15.1.1 GO:0004784 ... A0A1S4CIZ9 38428393
    898167 8wa0:B (2.7) BS01 dna 2.7.7.6 GO:0000428 ... P06271 38428393
    898168 8wa0:B (2.7) BS02 rna 2.7.7.6 GO:0000428 ... P06271 38428393
    898169 8wa0:B (2.7) BS03 ZN 2.7.7.6 GO:0000428 ... P06271 38428393
    898170 8wa0:C (2.7) BS01 dna 2.7.7.6 GO:0000287 ... A0A140G1Q3 38428393
    898171 8wa0:C (2.7) BS02 rna 2.7.7.6 GO:0000287 ... A0A140G1Q3 38428393
    898172 8wa0:C (2.7) BS03 MG 2.7.7.6 GO:0000287 ... A0A140G1Q3 38428393
    898173 8wa0:G (2.7) BS01 FE 1.15.1.1 GO:0004784 ... A0A1S4CKK0 38428393
    898174 8wa0:L (2.7) BS01 FE 1.15.1.1 GO:0004784 ... A0A1S4CIZ9 38428393
    898175 8wa1:B (2.8) BS01 dna 2.7.7.6 GO:0000428 ... P06271 38428393
    898176 8wa1:B (2.8) BS02 dna 2.7.7.6 GO:0000428 ... P06271 38428393
    898177 8wa1:B (2.8) BS03 rna 2.7.7.6 GO:0000428 ... P06271 38428393
    898178 8wa1:B (2.8) BS04 ZN 2.7.7.6 GO:0000428 ... P06271 38428393
    898179 8wa1:C (2.8) BS01 dna 2.7.7.6 GO:0000287 ... A0A140G1Q3 38428393
    898180 8wa1:C (2.8) BS02 rna 2.7.7.6 GO:0000287 ... A0A140G1Q3 38428393
    898181 8wa1:C (2.8) BS03 MG 2.7.7.6 GO:0000287 ... A0A140G1Q3 38428393
    898182 8wa1:G (2.8) BS01 FE 1.15.1.1 GO:0004784 ... A0A1S4CKK0 38428393
    898183 8wa1:L (2.8) BS01 FE 1.15.1.1 GO:0004784 ... A0A1S4CIZ9 38428393
    898184 8wa1:c (2.8) BS01 dna 2.7.7.6 GO:0000428 ... P38550 38428393
    898185 8wa2:A (3.0) BS01 FUB ? N/A A8J9H7 38552612
    898186 8wa2:A (3.0) BS02 FUB ? N/A A8J9H7 38552612
    898187 8wa2:A (3.0) BS03 FUB ? N/A A8J9H7 38552612
    898188 8wa2:A (3.0) BS04 GZL ? N/A A8J9H7 38552612
    898189 8wa2:A (3.0) BS05 FUB ? N/A A8J9H7 38552612
    898190 8wa2:A (3.0) BS06 FUB ? N/A A8J9H7 38552612
    898191 8wa2:A (3.0) BS07 GZL ? N/A A8J9H7 38552612
    898192 8wa2:A (3.0) BS08 FUB ? N/A A8J9H7 38552612
    898193 8wa2:A (3.0) BS09 FUB ? N/A A8J9H7 38552612
    898194 8wa2:A (3.0) BS10 FUB ? N/A A8J9H7 38552612
    898195 8wa2:A (3.0) BS11 FUB ? N/A A8J9H7 38552612
    898196 8wa2:A (3.0) BS12 FUB ? N/A A8J9H7 38552612
    898197 8wa2:A (3.0) BS13 FUB ? N/A A8J9H7 38552612
    898198 8wa2:A (3.0) BS14 FUB ? N/A A8J9H7 38552612
    898199 8wa2:A (3.0) BS15 FUB ? N/A A8J9H7 38552612
    898200 8wa2:A (3.0) BS16 FUB ? N/A A8J9H7 38552612

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).