SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    922201 8y5s:l (4.5) BS01 rna N/A GO:0002181 ... P02413 N/A
    922202 8y5s:m (4.5) BS01 rna N/A GO:0000027 ... P0ADY7 N/A
    922203 8y5s:m (4.5) BS02 rna N/A GO:0000027 ... P0ADY7 N/A
    922204 8y5s:n (4.5) BS01 rna N/A GO:0000027 ... P0AG44 N/A
    922205 8y5s:o (4.5) BS01 rna N/A GO:0002181 ... P0C018 N/A
    922206 8y5s:o (4.5) BS02 rna N/A GO:0002181 ... P0C018 N/A
    922207 8y5s:p (4.5) BS01 rna N/A GO:0000027 ... P0A7K6 N/A
    922208 8y5s:p (4.5) BS02 rna N/A GO:0000027 ... P0A7K6 N/A
    922209 8y5s:q (4.5) BS01 rna N/A GO:0000027 ... P0A7L3 N/A
    922210 8y5s:r (4.5) BS01 rna N/A GO:0002181 ... P0AG48 N/A
    922211 8y5s:s (4.5) BS01 rna N/A GO:0002181 ... P61175 N/A
    922212 8y5s:t (4.5) BS01 rna N/A GO:0000027 ... P0ADZ0 N/A
    922213 8y5s:u (4.5) BS01 rna N/A GO:0000027 ... P60624 N/A
    922214 8y5s:v (4.5) BS01 rna N/A GO:0000027 ... P68919 N/A
    922215 8y5s:w (4.5) BS01 rna N/A GO:0000027 ... P0A7L8 N/A
    922216 8y5s:w (4.5) BS02 rna N/A GO:0000027 ... P0A7L8 N/A
    922217 8y5s:x (4.5) BS01 rna N/A GO:0000027 ... P0A7M2 N/A
    922218 8y5s:y (4.5) BS01 rna N/A GO:0000027 ... P0A7M6 N/A
    922219 8y5s:z (4.5) BS01 rna N/A GO:0000027 ... P0AG51 N/A
    922220 8y5t:0 (4.4) BS01 rna N/A GO:0003746 ... P0A6M8 N/A
    922221 8y5t:0 (4.4) BS02 rna N/A GO:0003746 ... P0A6M8 N/A
    922222 8y5t:0 (4.4) BS03 rna N/A GO:0003746 ... P0A6M8 N/A
    922223 8y5t:0 (4.4) BS04 FUA N/A GO:0003746 ... P0A6M8 N/A
    922224 8y5t:0 (4.4) BS05 GDP N/A GO:0003746 ... P0A6M8 N/A
    922225 8y5t:A (4.4) BS01 rna N/A GO:0002181 ... P0A7M9 N/A
    922226 8y5t:B (4.4) BS01 rna N/A GO:0000027 ... P0A7N4 N/A
    922227 8y5t:B1 (4.4) BS01 rna N/A GO:0000287 ... P0A8T7 N/A
    922228 8y5t:B1 (4.4) BS02 dna N/A GO:0000287 ... P0A8T7 N/A
    922229 8y5t:B1 (4.4) BS03 dna N/A GO:0000287 ... P0A8T7 N/A
    922230 8y5t:B1 (4.4) BS04 MG N/A GO:0000287 ... P0A8T7 N/A
    922231 8y5t:B2 (4.4) BS01 rna N/A GO:0000345 ... P0A8V2 N/A
    922232 8y5t:B2 (4.4) BS02 dna N/A GO:0000345 ... P0A8V2 N/A
    922233 8y5t:B2 (4.4) BS03 dna N/A GO:0000345 ... P0A8V2 N/A
    922234 8y5t:C (4.4) BS01 rna N/A GO:0000027 ... P0A7N9 N/A
    922235 8y5t:D (4.4) BS01 rna N/A GO:0002181 ... P0A7P5 N/A
    922236 8y5t:E (4.4) BS01 rna N/A GO:0002181 ... P0A7Q1 N/A
    922237 8y5t:F (4.4) BS01 rna N/A GO:0002181 ... P0A7Q6 N/A
    922238 8y5t:G (4.4) BS01 rna N/A GO:0000028 ... P0A7V0 N/A
    922239 8y5t:H (4.4) BS01 rna N/A GO:0000028 ... P0A7V3 N/A
    922240 8y5t:H (4.4) BS02 rna N/A GO:0000028 ... P0A7V3 N/A
    922241 8y5t:I (4.4) BS01 rna N/A GO:0000028 ... P0A7V8 N/A
    922242 8y5t:I (4.4) BS02 rna N/A GO:0000028 ... P0A7V8 N/A
    922243 8y5t:J (4.4) BS01 rna N/A GO:0000028 ... P0A7W1 N/A
    922244 8y5t:J (4.4) BS02 rna N/A GO:0000028 ... P0A7W1 N/A
    922245 8y5t:K (4.4) BS01 rna N/A GO:0002181 ... P02358 N/A
    922246 8y5t:L (4.4) BS01 rna N/A GO:0000028 ... P02359 N/A
    922247 8y5t:L (4.4) BS02 rna N/A GO:0000028 ... P02359 N/A
    922248 8y5t:M (4.4) BS01 rna N/A GO:0000028 ... P0A7W7 N/A
    922249 8y5t:N (4.4) BS01 rna N/A GO:0002181 ... P0A7X3 N/A
    922250 8y5t:O (4.4) BS01 rna N/A GO:0000049 ... P0A7R5 N/A
    922251 8y5t:P (4.4) BS01 rna N/A GO:0002181 ... P0A7R9 N/A
    922252 8y5t:Q (4.4) BS01 rna N/A GO:0000049 ... P0A7S3 N/A
    922253 8y5t:Q (4.4) BS02 rna N/A GO:0000049 ... P0A7S3 N/A
    922254 8y5t:R (4.4) BS01 rna N/A GO:0000049 ... P0A7S9 N/A
    922255 8y5t:S (4.4) BS01 rna N/A GO:0000028 ... P0AG59 N/A
    922256 8y5t:T (4.4) BS01 rna N/A GO:0000028 ... P0ADZ4 N/A
    922257 8y5t:T (4.4) BS02 rna N/A GO:0000028 ... P0ADZ4 N/A
    922258 8y5t:U (4.4) BS01 rna N/A GO:0000028 ... P0A7T3 N/A
    922259 8y5t:V (4.4) BS01 rna N/A GO:0000028 ... P0AG63 N/A
    922260 8y5t:W (4.4) BS01 rna N/A GO:0002181 ... P0A7T7 N/A
    922261 8y5t:X (4.4) BS01 rna N/A GO:0002181 ... P0A7U3 N/A
    922262 8y5t:Y (4.4) BS01 rna N/A GO:0000028 ... P0A7U7 N/A
    922263 8y5t:Z (4.4) BS01 rna N/A GO:0000028 ... P68679 N/A
    922264 8y5t:b (4.4) BS01 rna N/A GO:0000027 ... P60422 N/A
    922265 8y5t:c (4.4) BS01 rna N/A GO:0000027 ... P60438 N/A
    922266 8y5t:d (4.4) BS01 rna N/A GO:0001070 ... P60723 N/A
    922267 8y5t:e (4.4) BS01 rna N/A GO:0000027 ... P62399 N/A
    922268 8y5t:e (4.4) BS02 rna N/A GO:0000027 ... P62399 N/A
    922269 8y5t:e (4.4) BS03 rna N/A GO:0000027 ... P62399 N/A
    922270 8y5t:f (4.4) BS01 rna N/A GO:0000027 ... P0AG55 N/A
    922271 8y5t:g (4.4) BS01 rna N/A GO:0002181 ... P0A7R1 N/A
    922272 8y5t:i (4.4) BS01 rna N/A GO:0000027 ... P0A7J7 N/A
    922273 8y5t:j (4.4) BS01 rna N/A GO:0002181 ... P0AA10 N/A
    922274 8y5t:k (4.4) BS01 rna N/A GO:0002181 ... P0ADY3 N/A
    922275 8y5t:k (4.4) BS02 rna N/A GO:0002181 ... P0ADY3 N/A
    922276 8y5t:l (4.4) BS01 rna N/A GO:0002181 ... P02413 N/A
    922277 8y5t:m (4.4) BS01 rna N/A GO:0000027 ... P0ADY7 N/A
    922278 8y5t:m (4.4) BS02 rna N/A GO:0000027 ... P0ADY7 N/A
    922279 8y5t:n (4.4) BS01 rna N/A GO:0000027 ... P0AG44 N/A
    922280 8y5t:o (4.4) BS01 rna N/A GO:0002181 ... P0C018 N/A
    922281 8y5t:o (4.4) BS02 rna N/A GO:0002181 ... P0C018 N/A
    922282 8y5t:p (4.4) BS01 rna N/A GO:0000027 ... P0A7K6 N/A
    922283 8y5t:p (4.4) BS02 rna N/A GO:0000027 ... P0A7K6 N/A
    922284 8y5t:q (4.4) BS01 rna N/A GO:0000027 ... P0A7L3 N/A
    922285 8y5t:r (4.4) BS01 rna N/A GO:0002181 ... P0AG48 N/A
    922286 8y5t:s (4.4) BS01 rna N/A GO:0002181 ... P61175 N/A
    922287 8y5t:t (4.4) BS01 rna N/A GO:0000027 ... P0ADZ0 N/A
    922288 8y5t:u (4.4) BS01 rna N/A GO:0000027 ... P60624 N/A
    922289 8y5t:v (4.4) BS01 rna N/A GO:0000027 ... P68919 N/A
    922290 8y5t:w (4.4) BS01 rna N/A GO:0000027 ... P0A7L8 N/A
    922291 8y5t:w (4.4) BS02 rna N/A GO:0000027 ... P0A7L8 N/A
    922292 8y5t:x (4.4) BS01 rna N/A GO:0000027 ... P0A7M2 N/A
    922293 8y5t:y (4.4) BS01 rna N/A GO:0000027 ... P0A7M6 N/A
    922294 8y5t:z (4.4) BS01 rna N/A GO:0000027 ... P0AG51 N/A
    922295 8y5u:A (3.04) BS01 NA N/A GO:0005886 ... Q9BZW2 39576865
    922296 8y5u:A (3.04) BS02 SO4 N/A GO:0005886 ... Q9BZW2 39576865
    922297 8y5u:B (3.04) BS01 NA N/A GO:0005886 ... Q9BZW2 39576865
    922298 8y5u:B (3.04) BS02 NA N/A GO:0005886 ... Q9BZW2 39576865
    922299 8y5u:B (3.04) BS03 SO4 N/A GO:0005886 ... Q9BZW2 39576865
    922300 8y5v:A (1.54) BS01 FUC N/A N/A K4LM89 38953656
    922301 8y5w:A (2.73) BS01 SO4 N/A GO:0005886 ... Q9BZW2 39576865
    922302 8y5w:A (2.73) BS02 NA N/A GO:0005886 ... Q9BZW2 39576865
    922303 8y5w:A (2.73) BS03 NA N/A GO:0005886 ... Q9BZW2 39576865
    922304 8y5w:B (2.73) BS01 NA N/A GO:0005886 ... Q9BZW2 39576865
    922305 8y5w:B (2.73) BS02 NA N/A GO:0005886 ... Q9BZW2 39576865
    922306 8y5w:B (2.73) BS03 SO4 N/A GO:0005886 ... Q9BZW2 39576865
    922307 8y5x:A (3.25) BS01 SO4 N/A GO:0005886 ... Q9BZW2 39576865
    922308 8y5x:A (3.25) BS02 NA N/A GO:0005886 ... Q9BZW2 39576865
    922309 8y5x:B (3.25) BS01 SO4 N/A GO:0005886 ... Q9BZW2 39576865
    922310 8y5x:B (3.25) BS02 NA N/A GO:0005886 ... Q9BZW2 39576865
    922311 8y5y:B (3.3) BS01 SO4 N/A GO:0005886 ... Q9BZW2 39576865
    922312 8y5y:C (3.3) BS01 SO4 N/A GO:0005886 ... Q9BZW2 39576865
    922313 8y5z:A (3.35) BS01 SO4 N/A GO:0005886 ... Q9BZW2 39576865
    922314 8y5z:A (3.35) BS02 NA N/A GO:0005886 ... Q9BZW2 39576865
    922315 8y5z:B (3.35) BS01 SO4 N/A GO:0005886 ... Q9BZW2 39576865
    922316 8y5z:B (3.35) BS02 NA N/A GO:0005886 ... Q9BZW2 39576865
    922317 8y60:A (3.23) BS01 CLR N/A GO:0003254 ... O60741 39307309
    922318 8y60:A (3.23) BS02 VNZ N/A GO:0003254 ... O60741 39307309
    922319 8y60:B (3.23) BS01 CLR N/A GO:0003254 ... O60741 39307309
    922320 8y60:B (3.23) BS02 VNZ N/A GO:0003254 ... O60741 39307309
    922321 8y60:C (3.23) BS01 CLR N/A GO:0003254 ... O60741 39307309
    922322 8y60:C (3.23) BS02 VNZ N/A GO:0003254 ... O60741 39307309
    922323 8y60:D (3.23) BS01 CLR N/A GO:0003254 ... O60741 39307309
    922324 8y60:D (3.23) BS02 VNZ N/A GO:0003254 ... O60741 39307309
    922325 8y62:R (3.2) BS01 16C N/A GO:0001540 ... P25090 40080544
    922326 8y63:R (3.2) BS01 A1LXR N/A GO:0001540 ... P25090 40080544
    922327 8y65:A (3.51) BS01 URC N/A GO:0005351 ... Q9NRM0 38866775
    922328 8y66:A (3.28) BS01 AGI N/A GO:0005351 ... Q9NRM0 38866775
    922329 8y69:A (3.38) BS01 CLR N/A GO:0004930 ... Q9BXB1 39753551
    922330 8y69:C (3.38) BS01 CLR N/A N/A Q9ULT6 39753551
    922331 8y69:D (3.38) BS01 CLR N/A GO:0004930 ... Q9BXB1 39753551
    922332 8y69:H (3.38) BS01 CLR N/A N/A Q9ULT6 39753551
    922333 8y6a:A (2.72) BS01 ZN N/A GO:0006508 ... Q9BYF1 39013463
    922334 8y6a:D (2.72) BS01 MAN N/A N/A N/A 39013463
    922335 8y6b:A (3.49) BS01 CA ? GO:0004222 ... Q9P0K1 N/A
    922336 8y6b:A (3.49) BS02 CA ? GO:0004222 ... Q9P0K1 N/A
    922337 8y6b:A (3.49) BS03 CA ? GO:0004222 ... Q9P0K1 N/A
    922338 8y6b:B (3.49) BS01 CA ? GO:0004222 ... Q9P0K1 N/A
    922339 8y6b:B (3.49) BS02 CA ? GO:0004222 ... Q9P0K1 N/A
    922340 8y6b:B (3.49) BS03 CA ? GO:0004222 ... Q9P0K1 N/A
    922341 8y6b:C (3.49) BS01 CA ? GO:0004222 ... Q9P0K1 N/A
    922342 8y6b:C (3.49) BS02 CA ? GO:0004222 ... Q9P0K1 N/A
    922343 8y6b:C (3.49) BS03 CA ? GO:0004222 ... Q9P0K1 N/A
    922344 8y6b:D (3.49) BS01 CA ? GO:0005102 ... O95970 N/A
    922345 8y6b:E (3.49) BS01 CA ? GO:0005102 ... O95970 N/A
    922346 8y6b:F (3.49) BS01 CA ? GO:0005102 ... O95970 N/A
    922347 8y6c:A (1.47) BS01 FUC N/A N/A Q5F4T5 38953656
    922348 8y6c:A (1.47) BS02 GLC N/A N/A Q5F4T5 38953656
    922349 8y6c:A (1.47) BS03 FUC N/A N/A Q5F4T5 38953656
    922350 8y6c:A (1.47) BS04 GAL N/A N/A Q5F4T5 38953656
    922351 8y6c:A (1.47) BS05 FUC N/A N/A Q5F4T5 38953656
    922352 8y6c:B (1.47) BS01 GLC N/A N/A Q5F4T5 38953656
    922353 8y6c:B (1.47) BS02 FUC N/A N/A Q5F4T5 38953656
    922354 8y6c:B (1.47) BS03 FUC N/A N/A Q5F4T5 38953656
    922355 8y6d:A (1.41) BS01 FUC N/A N/A Q5F4T5 38953656
    922356 8y6d:B (1.41) BS01 GLC N/A N/A Q5F4T5 38953656
    922357 8y6f:A (2.01) BS01 FE N/A GO:0006826 ... P02794 38604418
    922358 8y6f:B (2.01) BS01 FE N/A GO:0006826 ... P02794 38604418
    922359 8y6f:B (2.01) BS02 FE N/A GO:0006826 ... P02794 38604418
    922360 8y6f:C (2.01) BS01 FE N/A GO:0006826 ... P02794 38604418
    922361 8y6f:D (2.01) BS01 FE N/A GO:0006826 ... P02794 38604418
    922362 8y6f:E (2.01) BS01 FE N/A GO:0006826 ... P02794 38604418
    922363 8y6f:E (2.01) BS02 FE N/A GO:0006826 ... P02794 38604418
    922364 8y6f:F (2.01) BS01 FE N/A GO:0006826 ... P02794 38604418
    922365 8y6f:G (2.01) BS01 FE N/A GO:0006826 ... P02794 38604418
    922366 8y6f:G (2.01) BS02 FE N/A GO:0006826 ... P02794 38604418
    922367 8y6f:H (2.01) BS01 FE N/A GO:0006826 ... P02794 38604418
    922368 8y6f:I (2.01) BS01 FE N/A GO:0006826 ... P02794 38604418
    922369 8y6f:J (2.01) BS01 FE N/A GO:0006826 ... P02794 38604418
    922370 8y6f:K (2.01) BS01 FE N/A GO:0006826 ... P02794 38604418
    922371 8y6f:K (2.01) BS02 FE N/A GO:0006826 ... P02794 38604418
    922372 8y6f:L (2.01) BS01 FE N/A GO:0006826 ... P02794 38604418
    922373 8y6f:L (2.01) BS02 FE N/A GO:0006826 ... P02794 38604418
    922374 8y6h:A (2.49) BS01 R0Z 7.6.2.1
    7.6.2.2
    GO:0000086 ... P08183 38579618
    922375 8y6h:A (2.49) BS02 R0Z 7.6.2.1
    7.6.2.2
    GO:0000086 ... P08183 38579618
    922376 8y6h:A (2.49) BS03 R0Z 7.6.2.1
    7.6.2.2
    GO:0000086 ... P08183 38579618
    922377 8y6i:A (2.54) BS01 CLR 7.6.2.1
    7.6.2.2
    GO:0000086 ... P08183 38579618
    922378 8y6i:A (2.54) BS02 CLR 7.6.2.1
    7.6.2.2
    GO:0000086 ... P08183 38579618
    922379 8y6i:A (2.54) BS03 CLR 7.6.2.1
    7.6.2.2
    GO:0000086 ... P08183 38579618
    922380 8y6i:A (2.54) BS04 CLR 7.6.2.1
    7.6.2.2
    GO:0000086 ... P08183 38579618
    922381 8y6i:A (2.54) BS05 CLR 7.6.2.1
    7.6.2.2
    GO:0000086 ... P08183 38579618
    922382 8y6i:A (2.54) BS06 CLR 7.6.2.1
    7.6.2.2
    GO:0000086 ... P08183 38579618
    922383 8y6i:A (2.54) BS07 CLR 7.6.2.1
    7.6.2.2
    GO:0000086 ... P08183 38579618
    922384 8y6i:A (2.54) BS08 R0Z 7.6.2.1
    7.6.2.2
    GO:0000086 ... P08183 38579618
    922385 8y6i:A (2.54) BS09 R0Z 7.6.2.1
    7.6.2.2
    GO:0000086 ... P08183 38579618
    922386 8y6i:A (2.54) BS10 R0Z 7.6.2.1
    7.6.2.2
    GO:0000086 ... P08183 38579618
    922387 8y6k:A (3.94) BS01 ZN N/A GO:0003779 ... Q8TDZ2 39122694
    922388 8y6k:A (3.94) BS02 ZN N/A GO:0003779 ... Q8TDZ2 39122694
    922389 8y6k:A (3.94) BS03 FAD N/A GO:0003779 ... Q8TDZ2 39122694
    922390 8y6o:C (3.38) BS01 rna ? GO:0000244 ... Q6P2Q9 38484052
    922391 8y6o:C (3.38) BS02 rna ? GO:0000244 ... Q6P2Q9 38484052
    922392 8y6o:C (3.38) BS03 IHP ? GO:0000244 ... Q6P2Q9 38484052
    922393 8y6o:D (3.38) BS01 GTP ? GO:0000244 ... Q15029 38484052
    922394 8y6o:F (3.38) BS01 rna ? GO:0000244 ... Q96DI7 38484052
    922395 8y6o:G (3.38) BS01 rna ? GO:0000244 ... O94906 38484052
    922396 8y6o:G (3.38) BS02 rna ? GO:0000244 ... O94906 38484052
    922397 8y6o:I (3.38) BS01 rna 3.6.4.13 GO:0000244 ... Q9BUQ8 38484052
    922398 8y6o:I (3.38) BS02 rna 3.6.4.13 GO:0000244 ... Q9BUQ8 38484052
    922399 8y6o:L (3.38) BS01 rna ? GO:0000244 ... Q8WWY3 38484052
    922400 8y6o:L (3.38) BS02 rna ? GO:0000244 ... Q8WWY3 38484052

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).