SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    935401 9fmz:A (3.6) BS01 C2E N/A GO:0005886 ... P37653 39394223
    935402 9fmz:A (3.6) BS02 C2E N/A GO:0005886 ... P37653 39394223
    935403 9fne:C (4.0) BS01 dna N/A N/A N/A 39919186
    935404 9fne:C (4.0) BS02 dna N/A N/A N/A 39919186
    935405 9fne:D (4.0) BS01 dna N/A N/A N/A 39919186
    935406 9fne:D (4.0) BS02 dna N/A N/A N/A 39919186
    935407 9fne:D (4.0) BS03 ZN N/A N/A N/A 39919186
    935408 9fne:D (4.0) BS04 ZN N/A N/A N/A 39919186
    935409 9fne:D (4.0) BS05 MG N/A N/A N/A 39919186
    935410 9fne:F (4.0) BS01 dna N/A N/A N/A 39919186
    935411 9fne:F (4.0) BS02 dna N/A N/A N/A 39919186
    935412 9fne:X (4.0) BS01 dna N/A N/A N/A 39919186
    935413 9fne:X (4.0) BS02 dna N/A N/A N/A 39919186
    935414 9fne:Y (4.0) BS01 dna N/A N/A N/A 39919186
    935415 9fnn:A (2.85) BS01 C2E N/A GO:0005886 ... P37653 39394223
    935416 9fnn:A (2.85) BS02 C2E N/A GO:0005886 ... P37653 39394223
    935417 9fnn:E (2.85) BS01 C2E N/A GO:0000166 ... P37657 39394223
    935418 9fnn:E (2.85) BS02 C2E N/A GO:0000166 ... P37657 39394223
    935419 9fnn:Q (2.85) BS01 peptide N/A GO:0005524 ... P0DP92 39394223
    935420 9fnn:Q (2.85) BS02 ATP N/A GO:0005524 ... P0DP92 39394223
    935421 9fnn:Q (2.85) BS03 ATP N/A GO:0005524 ... P0DP92 39394223
    935422 9fnn:U (2.85) BS01 C2E N/A GO:0000166 ... P37657 39394223
    935423 9fnn:U (2.85) BS02 C2E N/A GO:0000166 ... P37657 39394223
    935424 9fnn:W (2.85) BS01 peptide N/A GO:0005524 ... P0DP92 39394223
    935425 9fnn:W (2.85) BS02 ATP N/A GO:0005524 ... P0DP92 39394223
    935426 9fnn:W (2.85) BS03 ATP N/A GO:0005524 ... P0DP92 39394223
    935427 9fno:A (5.2) BS01 HEM N/A N/A P69905 39738064
    935428 9fno:B (5.2) BS01 HEM N/A N/A P68871 39738064
    935429 9fno:D (5.2) BS01 peptide N/A N/A P00738 39738064
    935430 9fno:E (5.2) BS01 CA N/A N/A Q86VB7 39738064
    935431 9fno:E (5.2) BS02 CA N/A N/A Q86VB7 39738064
    935432 9fno:F (5.2) BS01 CA N/A N/A Q86VB7 39738064
    935433 9fno:G (5.2) BS01 CA N/A N/A Q86VB7 39738064
    935434 9fnr:A (1.64) BS01 A1ICD N/A N/A P22629 39760306
    935435 9fny:A2 (3.2) BS01 rna N/A N/A Q8U232 39797736
    935436 9fny:A3 (3.2) BS01 rna N/A N/A Q8U3B0 39797736
    935437 9fny:A4 (3.2) BS01 rna N/A N/A Q8U3B0 39797736
    935438 9fny:A4 (3.2) BS02 rna N/A N/A Q8U3B0 39797736
    935439 9fny:A5 (3.2) BS01 rna N/A N/A Q8U160 39797736
    935440 9fny:AB (3.2) BS01 rna N/A N/A Q8U0F0 39797736
    935441 9fny:AC (3.2) BS01 rna N/A N/A Q8U004 39797736
    935442 9fny:AD (3.2) BS01 rna N/A N/A Q8TZE1 39797736
    935443 9fny:AE (3.2) BS01 rna N/A N/A P61993 39797736
    935444 9fny:AF (3.2) BS01 rna N/A N/A Q8U011 39797736
    935445 9fny:AG (3.2) BS01 rna N/A N/A Q8U017 39797736
    935446 9fny:AH (3.2) BS01 rna N/A N/A Q8U3H8 39797736
    935447 9fny:AI (3.2) BS01 rna N/A N/A Q8U0M8 39797736
    935448 9fny:AJ (3.2) BS01 rna N/A N/A Q8U014 39797736
    935449 9fny:AK (3.2) BS01 rna N/A N/A Q8U1Y5 39797736
    935450 9fny:AL (3.2) BS01 rna N/A N/A Q8U0E7 39797736
    935451 9fny:AM (3.2) BS01 rna N/A N/A P61885 39797736
    935452 9fny:AN (3.2) BS01 rna N/A N/A Q8U0E3 39797736
    935453 9fny:AO (3.2) BS01 rna N/A N/A P61995 39797736
    935454 9fny:AP (3.2) BS01 rna N/A N/A Q8U0E2 39797736
    935455 9fny:AQ (3.2) BS01 rna N/A N/A Q8U013 39797736
    935456 9fny:AR (3.2) BS01 rna N/A N/A Q8TZD9 39797736
    935457 9fny:AS (3.2) BS01 rna N/A N/A Q8U008 39797736
    935458 9fny:AT (3.2) BS01 rna N/A N/A Q8U0U1 39797736
    935459 9fny:AU (3.2) BS01 rna N/A N/A Q8U002 39797736
    935460 9fny:AV (3.2) BS01 rna N/A N/A Q8U0T4 39797736
    935461 9fny:AW (3.2) BS01 rna N/A N/A Q8U442 39797736
    935462 9fny:AX (3.2) BS01 rna N/A N/A Q8U443 39797736
    935463 9fny:AY (3.2) BS01 rna N/A N/A Q8U474 39797736
    935464 9fny:AZ (3.2) BS01 rna N/A N/A Q8U159 39797736
    935465 9fny:B2 (3.2) BS01 rna N/A N/A Q8U232 39797736
    935466 9fny:B3 (3.2) BS01 rna N/A N/A Q8U3B0 39797736
    935467 9fny:B4 (3.2) BS01 rna N/A N/A Q8U3B0 39797736
    935468 9fny:B4 (3.2) BS02 rna N/A N/A Q8U3B0 39797736
    935469 9fny:B5 (3.2) BS01 rna N/A N/A Q8U160 39797736
    935470 9fny:BB (3.2) BS01 rna N/A N/A Q8U0F0 39797736
    935471 9fny:BC (3.2) BS01 rna N/A N/A Q8U004 39797736
    935472 9fny:BD (3.2) BS01 rna N/A N/A Q8TZE1 39797736
    935473 9fny:BE (3.2) BS01 rna N/A N/A P61993 39797736
    935474 9fny:BF (3.2) BS01 rna N/A N/A Q8U011 39797736
    935475 9fny:BG (3.2) BS01 rna N/A N/A Q8U017 39797736
    935476 9fny:BH (3.2) BS01 rna N/A N/A Q8U3H8 39797736
    935477 9fny:BI (3.2) BS01 rna N/A N/A Q8U0M8 39797736
    935478 9fny:BJ (3.2) BS01 rna N/A N/A Q8U014 39797736
    935479 9fny:BK (3.2) BS01 rna N/A N/A Q8U1Y5 39797736
    935480 9fny:BL (3.2) BS01 rna N/A N/A Q8U0E7 39797736
    935481 9fny:BM (3.2) BS01 rna N/A N/A P61885 39797736
    935482 9fny:BN (3.2) BS01 rna N/A N/A Q8U0E3 39797736
    935483 9fny:BO (3.2) BS01 rna N/A N/A P61995 39797736
    935484 9fny:BP (3.2) BS01 rna N/A N/A Q8U0E2 39797736
    935485 9fny:BQ (3.2) BS01 rna N/A N/A Q8U013 39797736
    935486 9fny:BR (3.2) BS01 rna N/A N/A Q8TZD9 39797736
    935487 9fny:BS (3.2) BS01 rna N/A N/A Q8U008 39797736
    935488 9fny:BT (3.2) BS01 rna N/A N/A Q8U0U1 39797736
    935489 9fny:BU (3.2) BS01 rna N/A N/A Q8U002 39797736
    935490 9fny:BV (3.2) BS01 rna N/A N/A Q8U0T4 39797736
    935491 9fny:BW (3.2) BS01 rna N/A N/A Q8U442 39797736
    935492 9fny:BX (3.2) BS01 rna N/A N/A Q8U443 39797736
    935493 9fny:BY (3.2) BS01 rna N/A N/A Q8U474 39797736
    935494 9fny:BZ (3.2) BS01 rna N/A N/A Q8U159 39797736
    935495 9fnz:A2 (3.2) BS01 rna N/A N/A Q8U232 39797736
    935496 9fnz:A3 (3.2) BS01 rna N/A N/A Q8U3B0 39797736
    935497 9fnz:A4 (3.2) BS01 rna N/A N/A Q8U3B0 39797736
    935498 9fnz:A4 (3.2) BS02 rna N/A N/A Q8U3B0 39797736
    935499 9fnz:A5 (3.2) BS01 rna N/A N/A Q8U160 39797736
    935500 9fnz:AB (3.2) BS01 rna N/A N/A Q8U0F0 39797736
    935501 9fnz:AC (3.2) BS01 rna N/A N/A Q8U004 39797736
    935502 9fnz:AD (3.2) BS01 rna N/A N/A Q8TZE1 39797736
    935503 9fnz:AE (3.2) BS01 rna N/A N/A P61993 39797736
    935504 9fnz:AF (3.2) BS01 rna N/A N/A Q8U011 39797736
    935505 9fnz:AG (3.2) BS01 rna N/A N/A Q8U017 39797736
    935506 9fnz:AH (3.2) BS01 rna N/A N/A Q8U3H8 39797736
    935507 9fnz:AI (3.2) BS01 rna N/A N/A Q8U0M8 39797736
    935508 9fnz:AJ (3.2) BS01 rna N/A N/A Q8U014 39797736
    935509 9fnz:AK (3.2) BS01 rna N/A N/A Q8U1Y5 39797736
    935510 9fnz:AL (3.2) BS01 rna N/A N/A Q8U0E7 39797736
    935511 9fnz:AM (3.2) BS01 rna N/A N/A P61885 39797736
    935512 9fnz:AN (3.2) BS01 rna N/A N/A Q8U0E3 39797736
    935513 9fnz:AO (3.2) BS01 rna N/A N/A P61995 39797736
    935514 9fnz:AP (3.2) BS01 rna N/A N/A Q8U0E2 39797736
    935515 9fnz:AQ (3.2) BS01 rna N/A N/A Q8U013 39797736
    935516 9fnz:AR (3.2) BS01 rna N/A N/A Q8TZD9 39797736
    935517 9fnz:AS (3.2) BS01 rna N/A N/A Q8U008 39797736
    935518 9fnz:AT (3.2) BS01 rna N/A N/A Q8U0U1 39797736
    935519 9fnz:AU (3.2) BS01 rna N/A N/A Q8U002 39797736
    935520 9fnz:AV (3.2) BS01 rna N/A N/A Q8U0T4 39797736
    935521 9fnz:AW (3.2) BS01 rna N/A N/A Q8U442 39797736
    935522 9fnz:AX (3.2) BS01 rna N/A N/A Q8U443 39797736
    935523 9fnz:AY (3.2) BS01 rna N/A N/A Q8U474 39797736
    935524 9fnz:AZ (3.2) BS01 rna N/A N/A Q8U159 39797736
    935525 9fnz:B2 (3.2) BS01 rna N/A N/A Q8U232 39797736
    935526 9fnz:B3 (3.2) BS01 rna N/A N/A Q8U3B0 39797736
    935527 9fnz:B4 (3.2) BS01 rna N/A N/A Q8U3B0 39797736
    935528 9fnz:B4 (3.2) BS02 rna N/A N/A Q8U3B0 39797736
    935529 9fnz:B5 (3.2) BS01 rna N/A N/A Q8U160 39797736
    935530 9fnz:BB (3.2) BS01 rna N/A N/A Q8U0F0 39797736
    935531 9fnz:BC (3.2) BS01 rna N/A N/A Q8U004 39797736
    935532 9fnz:BD (3.2) BS01 rna N/A N/A Q8TZE1 39797736
    935533 9fnz:BE (3.2) BS01 rna N/A N/A P61993 39797736
    935534 9fnz:BF (3.2) BS01 rna N/A N/A Q8U011 39797736
    935535 9fnz:BG (3.2) BS01 rna N/A N/A Q8U017 39797736
    935536 9fnz:BH (3.2) BS01 rna N/A N/A Q8U3H8 39797736
    935537 9fnz:BI (3.2) BS01 rna N/A N/A Q8U0M8 39797736
    935538 9fnz:BJ (3.2) BS01 rna N/A N/A Q8U014 39797736
    935539 9fnz:BK (3.2) BS01 rna N/A N/A Q8U1Y5 39797736
    935540 9fnz:BL (3.2) BS01 rna N/A N/A Q8U0E7 39797736
    935541 9fnz:BM (3.2) BS01 rna N/A N/A P61885 39797736
    935542 9fnz:BN (3.2) BS01 rna N/A N/A Q8U0E3 39797736
    935543 9fnz:BO (3.2) BS01 rna N/A N/A P61995 39797736
    935544 9fnz:BP (3.2) BS01 rna N/A N/A Q8U0E2 39797736
    935545 9fnz:BQ (3.2) BS01 rna N/A N/A Q8U013 39797736
    935546 9fnz:BR (3.2) BS01 rna N/A N/A Q8TZD9 39797736
    935547 9fnz:BS (3.2) BS01 rna N/A N/A Q8U008 39797736
    935548 9fnz:BT (3.2) BS01 rna N/A N/A Q8U0U1 39797736
    935549 9fnz:BU (3.2) BS01 rna N/A N/A Q8U002 39797736
    935550 9fnz:BV (3.2) BS01 rna N/A N/A Q8U0T4 39797736
    935551 9fnz:BW (3.2) BS01 rna N/A N/A Q8U442 39797736
    935552 9fnz:BX (3.2) BS01 rna N/A N/A Q8U443 39797736
    935553 9fnz:BY (3.2) BS01 rna N/A N/A Q8U474 39797736
    935554 9fnz:BZ (3.2) BS01 rna N/A N/A Q8U159 39797736
    935555 9fo0:A2 (3.4) BS01 rna N/A N/A Q8U232 39797736
    935556 9fo0:A5 (3.4) BS01 rna N/A N/A Q8U160 39797736
    935557 9fo0:AB (3.4) BS01 rna N/A N/A Q8U0F0 39797736
    935558 9fo0:AC (3.4) BS01 rna N/A N/A Q8U004 39797736
    935559 9fo0:AD (3.4) BS01 rna N/A N/A Q8TZE1 39797736
    935560 9fo0:AE (3.4) BS01 rna N/A N/A P61993 39797736
    935561 9fo0:AF (3.4) BS01 rna N/A N/A Q8U011 39797736
    935562 9fo0:AG (3.4) BS01 rna N/A N/A Q8U017 39797736
    935563 9fo0:AH (3.4) BS01 rna N/A N/A Q8U3H8 39797736
    935564 9fo0:AI (3.4) BS01 rna N/A N/A Q8U0M8 39797736
    935565 9fo0:AJ (3.4) BS01 rna N/A N/A Q8U014 39797736
    935566 9fo0:AK (3.4) BS01 rna N/A N/A Q8U1Y5 39797736
    935567 9fo0:AL (3.4) BS01 rna N/A N/A Q8U0E7 39797736
    935568 9fo0:AM (3.4) BS01 rna N/A N/A P61885 39797736
    935569 9fo0:AN (3.4) BS01 rna N/A N/A Q8U0E3 39797736
    935570 9fo0:AO (3.4) BS01 rna N/A N/A P61995 39797736
    935571 9fo0:AP (3.4) BS01 rna N/A N/A Q8U0E2 39797736
    935572 9fo0:AQ (3.4) BS01 rna N/A N/A Q8U013 39797736
    935573 9fo0:AR (3.4) BS01 rna N/A N/A Q8TZD9 39797736
    935574 9fo0:AS (3.4) BS01 rna N/A N/A Q8U008 39797736
    935575 9fo0:AT (3.4) BS01 rna N/A N/A Q8U0U1 39797736
    935576 9fo0:AU (3.4) BS01 rna N/A N/A Q8U002 39797736
    935577 9fo0:AV (3.4) BS01 rna N/A N/A Q8U0T4 39797736
    935578 9fo0:AW (3.4) BS01 rna N/A N/A Q8U442 39797736
    935579 9fo0:AX (3.4) BS01 rna N/A N/A Q8U443 39797736
    935580 9fo0:AY (3.4) BS01 rna N/A N/A Q8U474 39797736
    935581 9fo0:AZ (3.4) BS01 rna N/A N/A Q8U159 39797736
    935582 9fo1:A (3.11) BS01 CA N/A N/A N/A 39797788
    935583 9fo1:A (3.11) BS02 CA N/A N/A N/A 39797788
    935584 9fo2:A (2.58) BS01 A1IEI N/A N/A P21404 39292620
    935585 9fo5:A (2.69) BS01 A1IEH N/A N/A P21404 39292620
    935586 9fo7:E (2.85) BS01 C2E N/A GO:0000166 ... P37657 39394223
    935587 9fo7:E (2.85) BS02 C2E N/A GO:0000166 ... P37657 39394223
    935588 9fo7:U (2.85) BS01 C2E N/A GO:0000166 ... P37657 39394223
    935589 9fo7:U (2.85) BS02 C2E N/A GO:0000166 ... P37657 39394223
    935590 9foa:D (1.36) BS01 A1ID2 N/A N/A P22629 39760306
    935591 9foj:A (3.82) BS01 CPL N/A N/A P29837 N/A
    935592 9foj:A (3.82) BS02 CPL N/A N/A P29837 N/A
    935593 9foj:B (3.82) BS01 CPL N/A N/A P29837 N/A
    935594 9foj:B (3.82) BS02 CPL N/A N/A P29837 N/A
    935595 9foj:C (3.82) BS01 CPL N/A N/A P29837 N/A
    935596 9foj:D (3.82) BS01 CPL N/A N/A P29837 N/A
    935597 9fow:B (1.878) BS01 FUC N/A N/A Q8BPS4 39609618
    935598 9fow:B (1.878) BS02 FUC N/A N/A Q8BPS4 39609618
    935599 9fow:C (1.878) BS01 FUC N/A N/A Q8BPS4 39609618
    935600 9fow:C (1.878) BS02 FUC N/A N/A Q8BPS4 39609618

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).