SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    98201 2om1:T (1.97) BS03 peptide ? GO:0005179 ... P01308 18093308
    98202 2om1:T (1.97) BS04 peptide ? GO:0005179 ... P01308 18093308
    98203 2om1:T (1.97) BS05 SCN ? GO:0005179 ... P01308 18093308
    98204 2om2:A (2.2) BS01 GDP ? GO:0000132 ... P63096 17603074
    98205 2om2:C (2.2) BS01 MG ? GO:0000132 ... P63096 17603074
    98206 2om2:C (2.2) BS02 GDP ? GO:0000132 ... P63096 17603074
    98207 2om3:A (4.4) BS01 rna ? GO:0005198 ... Q77LT8 17585939
    98208 2om7:E (7.3) BS01 rna ? GO:0000049 ... Q5SHN3 17349960
    98209 2om7:K (7.3) BS01 rna ? GO:0003723 ... Q5SLP7 17349960
    98210 2om7:K (7.3) BS02 rna ? GO:0003723 ... Q5SLP7 17349960
    98211 2om7:L (7.3) BS01 rna ? GO:0003746 ... Q5SHN5 17349960
    98212 2om7:L (7.3) BS02 rna ? GO:0003746 ... Q5SHN5 17349960
    98213 2om7:L (7.3) BS03 rna ? GO:0003746 ... Q5SHN5 17349960
    98214 2om7:L (7.3) BS04 rna ? GO:0003746 ... Q5SHN5 17349960
    98215 2om7:L (7.3) BS05 rna ? GO:0003746 ... Q5SHN5 17349960
    98216 2om9:A (2.8) BS01 AJA ? GO:0003677 ... P37231 17462987
    98217 2om9:A (2.8) BS02 AJA ? GO:0003677 ... P37231 17462987
    98218 2om9:A (2.8) BS03 AJA ? GO:0003677 ... P37231 17462987
    98219 2om9:B (2.8) BS01 AJA ? GO:0003677 ... P37231 17462987
    98220 2om9:B (2.8) BS02 AJA ? GO:0003677 ... P37231 17462987
    98221 2om9:B (2.8) BS03 AJA ? GO:0003677 ... P37231 17462987
    98222 2om9:C (2.8) BS01 AJA ? GO:0003677 ... P37231 17462987
    98223 2om9:D (2.8) BS01 AJA ? GO:0003677 ... P37231 17462987
    98224 2om9:D (2.8) BS02 AJA ? GO:0003677 ... P37231 17462987
    98225 2omb:A (2.9) BS01 SO4 N/A N/A N/A 17582169
    98226 2omb:B (2.9) BS01 SO4 N/A N/A N/A 17582169
    98227 2omb:C (2.9) BS01 SO4 N/A N/A N/A 17582169
    98228 2omb:D (2.9) BS01 SO4 N/A N/A N/A 17582169
    98229 2omb:D (2.9) BS02 IPH N/A N/A N/A 17582169
    98230 2ome:A (2.8) BS01 NAD ? GO:0003714 ... P56545 N/A
    98231 2ome:B (2.8) BS01 NAD ? GO:0003714 ... P56545 N/A
    98232 2ome:C (2.8) BS01 NAD ? GO:0003714 ... P56545 N/A
    98233 2ome:D (2.8) BS01 NAD ? GO:0003714 ... P56545 N/A
    98234 2ome:E (2.8) BS01 NAD ? GO:0003714 ... P56545 N/A
    98235 2ome:F (2.8) BS01 NAD ? GO:0003714 ... P56545 N/A
    98236 2ome:G (2.8) BS01 NAD ? GO:0003714 ... P56545 N/A
    98237 2ome:H (2.8) BS01 NAD ? GO:0003714 ... P56545 N/A
    98238 2omf:A (2.4) BS01 C8E ? GO:0001530 ... P02931 N/A
    98239 2omi:B (2.24) BS01 peptide ? GO:0005179 ... P01308 17339105
    98240 2omi:B (2.24) BS02 peptide ? GO:0005179 ... P01308 17339105
    98241 2omi:B (2.24) BS03 peptide ? GO:0005179 ... P01308 17339105
    98242 2omi:B (2.24) BS04 peptide ? GO:0005179 ... P01308 17339105
    98243 2omi:B (2.24) BS05 peptide ? GO:0005179 ... P01308 17339105
    98244 2omn:A (2.2) BS01 SO4 N/A N/A N/A 17582169
    98245 2omn:B (2.2) BS01 SO4 N/A N/A N/A 17582169
    98246 2omt:B (2.0) BS01 CA ? GO:0005509 ... P12830 17715295
    98247 2omv:B (1.9) BS01 CA ? GO:0005509 ... P12830 17540170
    98248 2omx:B (1.7) BS01 CA ? GO:0005509 ... P12830 17715295
    98249 2omy:B (1.7) BS01 CA ? GO:0005509 ... P12830 17540170
    98250 2on3:A (3.0) BS01 XAP 4.1.1.17 GO:0003824 ... P11926 17407445
    98251 2on3:B (3.0) BS01 XAP 4.1.1.17 GO:0003824 ... P11926 17407445
    98252 2on5:A (1.9) BS01 GSH ? GO:0004364 ... D3U1A6 17594497
    98253 2on5:B (1.9) BS01 GSH ? GO:0004364 ... D3U1A6 17594497
    98254 2on5:C (1.9) BS01 GSH ? GO:0004364 ... D3U1A6 17594497
    98255 2on5:D (1.9) BS01 GSH ? GO:0004364 ... D3U1A6 17594497
    98256 2on5:E (1.9) BS01 GSH ? GO:0004364 ... D3U1A6 17594497
    98257 2on5:F (1.9) BS01 GSH ? GO:0004364 ... D3U1A6 17594497
    98258 2on5:G (1.9) BS01 GSH ? GO:0004364 ... D3U1A6 17594497
    98259 2on5:H (1.9) BS01 GSH ? GO:0004364 ... D3U1A6 17594497
    98260 2on6:A (2.503) BS01 IMH 2.4.2.1 GO:0000255 ... P00491 17407325 MOAD: Ki=172nM
    98261 2onb:A (2.7) BS01 7PA 2.1.1.45 GO:0000900 ... P04818 17297914 BindingDB: Ki=2700nM
    98262 2onc:A (2.55) BS01 SY1 3.4.14.5 GO:0001618 ... P27487 17441705 BindingDB: IC50=13nM
    98263 2onc:A (2.55) BS02 SY1 3.4.14.5 GO:0001618 ... P27487 17441705 BindingDB: IC50=13nM
    98264 2onc:B (2.55) BS01 SY1 3.4.14.5 GO:0001618 ... P27487 17441705 BindingDB: IC50=13nM
    98265 2onc:B (2.55) BS02 SY1 3.4.14.5 GO:0001618 ... P27487 17441705 BindingDB: IC50=13nM
    98266 2onc:C (2.55) BS01 SY1 3.4.14.5 GO:0001618 ... P27487 17441705 BindingDB: IC50=13nM
    98267 2onc:C (2.55) BS02 SY1 3.4.14.5 GO:0001618 ... P27487 17441705 BindingDB: IC50=13nM
    98268 2onc:D (2.55) BS01 SY1 3.4.14.5 GO:0001618 ... P27487 17441705 BindingDB: IC50=13nM
    98269 2onc:D (2.55) BS02 SY1 3.4.14.5 GO:0001618 ... P27487 17441705 BindingDB: IC50=13nM
    98270 2one:A (2.0) BS01 MG 4.2.1.11 GO:0000015 ... P00924 9376357
    98271 2one:A (2.0) BS02 2PG 4.2.1.11 GO:0000015 ... P00924 9376357
    98272 2one:B (2.0) BS01 MG 4.2.1.11 GO:0000015 ... P00924 9376357
    98273 2one:B (2.0) BS02 PEP 4.2.1.11 GO:0000015 ... P00924 9376357
    98274 2onf:A (1.7) BS01 COA ? N/A Q9HLN2 N/A
    98275 2onf:B (1.7) BS01 COA ? N/A Q9HLN2 N/A
    98276 2ong:A (2.7) BS01 MN ? GO:0000287 ... Q40322 17372193
    98277 2ong:A (2.7) BS02 MN ? GO:0000287 ... Q40322 17372193
    98278 2ong:A (2.7) BS03 MN ? GO:0000287 ... Q40322 17372193
    98279 2ong:A (2.7) BS04 FPG ? GO:0000287 ... Q40322 17372193
    98280 2ong:B (2.7) BS01 MN ? GO:0000287 ... Q40322 17372193
    98281 2ong:B (2.7) BS02 MN ? GO:0000287 ... Q40322 17372193
    98282 2ong:B (2.7) BS03 MN ? GO:0000287 ... Q40322 17372193
    98283 2ong:B (2.7) BS04 FPG ? GO:0000287 ... Q40322 17372193
    98284 2onh:A (2.7) BS01 MN ? GO:0000287 ... Q40322 17372193
    98285 2onh:A (2.7) BS02 MN ? GO:0000287 ... Q40322 17372193
    98286 2onh:A (2.7) BS03 MN ? GO:0000287 ... Q40322 17372193
    98287 2onh:A (2.7) BS04 F3P ? GO:0000287 ... Q40322 17372193
    98288 2onh:B (2.7) BS01 MN ? GO:0000287 ... Q40322 17372193
    98289 2onh:B (2.7) BS02 MN ? GO:0000287 ... Q40322 17372193
    98290 2onh:B (2.7) BS03 MN ? GO:0000287 ... Q40322 17372193
    98291 2onh:B (2.7) BS04 F3P ? GO:0000287 ... Q40322 17372193
    98292 2onj:A (3.4) BS01 ANP 7.6.2.- GO:0005524 ... Q99T13 17303126
    98293 2onj:A (3.4) BS02 ANP 7.6.2.- GO:0005524 ... Q99T13 17303126
    98294 2onj:B (3.4) BS01 ANP 7.6.2.- GO:0005524 ... Q99T13 17303126
    98295 2onj:B (3.4) BS02 ANP 7.6.2.- GO:0005524 ... Q99T13 17303126
    98296 2onk:E (3.1) BS01 WO4 ? GO:0005886 ... O30142 17322901
    98297 2onk:E (3.1) BS02 MG ? GO:0005886 ... O30142 17322901
    98298 2onk:J (3.1) BS01 WO4 ? GO:0005886 ... O30142 17322901
    98299 2onk:J (3.1) BS02 MG ? GO:0005886 ... O30142 17322901
    98300 2onm:A (2.5) BS01 ADP 1.2.1.3 GO:0004029 ... P05091 17327228
    98301 2onm:B (2.5) BS01 NAD 1.2.1.3 GO:0004029 ... P05091 17327228
    98302 2onm:C (2.5) BS01 NAD 1.2.1.3 GO:0004029 ... P05091 17327228
    98303 2onm:D (2.5) BS01 ADP 1.2.1.3 GO:0004029 ... P05091 17327228
    98304 2onm:E (2.5) BS01 ADP 1.2.1.3 GO:0004029 ... P05091 17327228
    98305 2onm:F (2.5) BS01 NAD 1.2.1.3 GO:0004029 ... P05091 17327228
    98306 2onm:G (2.5) BS01 NAD 1.2.1.3 GO:0004029 ... P05091 17327228
    98307 2onm:H (2.5) BS01 NAD 1.2.1.3 GO:0004029 ... P05091 17327228
    98308 2onm:I (2.5) BS01 ADP 1.2.1.3 GO:0004029 ... P05091 17327228
    98309 2onm:J (2.5) BS01 ADP 1.2.1.3 GO:0004029 ... P05091 17327228
    98310 2onm:K (2.5) BS01 ADP 1.2.1.3 GO:0004029 ... P05091 17327228
    98311 2onm:L (2.5) BS01 ADP 1.2.1.3 GO:0004029 ... P05091 17327228
    98312 2onp:A (2.0) BS01 NAD 1.2.1.3 GO:0004029 ... P05091 17327228
    98313 2onp:B (2.0) BS01 NAD 1.2.1.3 GO:0004029 ... P05091 17327228
    98314 2onp:C (2.0) BS01 NAD 1.2.1.3 GO:0004029 ... P05091 17327228
    98315 2onp:D (2.0) BS01 NAD 1.2.1.3 GO:0004029 ... P05091 17327228
    98316 2onp:E (2.0) BS01 NAD 1.2.1.3 GO:0004029 ... P05091 17327228
    98317 2onp:F (2.0) BS01 NAD 1.2.1.3 GO:0004029 ... P05091 17327228
    98318 2onp:G (2.0) BS01 NAD 1.2.1.3 GO:0004029 ... P05091 17327228
    98319 2onp:H (2.0) BS01 NAD 1.2.1.3 GO:0004029 ... P05091 17327228
    98320 2onr:A (1.6) BS01 MG ? GO:0005886 ... O30142 17322901
    98321 2onr:A (1.6) BS02 MOO ? GO:0005886 ... O30142 17322901
    98322 2ons:A (1.55) BS01 WO4 ? GO:0005886 ... O30142 17322901
    98323 2ons:A (1.55) BS02 MG ? GO:0005886 ... O30142 17322901
    98324 2ony:A (2.6) BS01 SAH 2.1.1.28 GO:0004603 ... P11086 17845018
    98325 2ony:A (2.6) BS02 TMJ 2.1.1.28 GO:0004603 ... P11086 17845018 BindingDB: Ki=210nM
    98326 2ony:B (2.6) BS01 SAH 2.1.1.28 GO:0004603 ... P11086 17845018
    98327 2onz:A (2.8) BS01 SAH 2.1.1.28 GO:0004603 ... P11086 17845018
    98328 2onz:A (2.8) BS02 TMJ 2.1.1.28 GO:0004603 ... P11086 17845018 BindingDB: Ki=210nM
    98329 2onz:B (2.8) BS01 SAH 2.1.1.28 GO:0004603 ... P11086 17845018
    98330 2onz:B (2.8) BS02 TMJ 2.1.1.28 GO:0004603 ... P11086 17845018 BindingDB: Ki=210nM
    98331 2oo0:A (1.9) BS01 PLP 4.1.1.17 GO:0003824 ... P11926 17407445 MOAD: Kd=0.05uM
    98332 2oo0:A (1.9) BS02 XAP 4.1.1.17 GO:0003824 ... P11926 17407445 MOAD: Ki=1.4nM
    98333 2oo0:A (1.9) BS03 N2P 4.1.1.17 GO:0003824 ... P11926 17407445
    98334 2oo0:B (1.9) BS01 PLP 4.1.1.17 GO:0003824 ... P11926 17407445 MOAD: Kd=0.05uM
    98335 2oo0:B (1.9) BS02 XAP 4.1.1.17 GO:0003824 ... P11926 17407445 MOAD: Ki=1.4nM
    98336 2oo0:B (1.9) BS03 N2P 4.1.1.17 GO:0003824 ... P11926 17407445
    98337 2oo4:A (2.003) BS01 CA ? GO:0007219 ... Q04721 17401372
    98338 2oo4:A (2.003) BS02 CA ? GO:0007219 ... Q04721 17401372
    98339 2oo4:A (2.003) BS03 CA ? GO:0007219 ... Q04721 17401372
    98340 2oo4:A (2.003) BS04 ZN ? GO:0007219 ... Q04721 17401372
    98341 2oo4:B (2.003) BS01 CA ? GO:0007219 ... Q04721 17401372
    98342 2oo4:B (2.003) BS02 CA ? GO:0007219 ... Q04721 17401372
    98343 2oo4:B (2.003) BS03 CA ? GO:0007219 ... Q04721 17401372
    98344 2oo5:A (2.6) BS01 TXD 7.1.1.1 GO:0003957 ... Q2RSB2 17323922
    98345 2oo5:B (2.6) BS01 TXD 7.1.1.1 GO:0003957 ... Q2RSB2 17323922
    98346 2oo5:C (2.6) BS01 NAP 7.1.1.1 N/A P0C188 17323922
    98347 2oo7:A (1.8) BS01 ZN 2.7.4.3 GO:0004017 ... P16304 N/A
    98348 2oo7:A (1.8) BS02 AP5 2.7.4.3 GO:0004017 ... P16304 N/A
    98349 2oo7:B (1.8) BS01 ZN 2.7.4.3 GO:0004017 ... P16304 N/A
    98350 2oo7:B (1.8) BS02 AP5 2.7.4.3 GO:0004017 ... P16304 N/A
    98351 2oo8:X (2.2) BS01 RAJ 2.7.10.1 GO:0004672 ... Q02763 17350837 MOAD: ic50=1nM
    BindingDB: IC50=1nM
    98352 2ood:A (2.62) BS01 ZN 3.5.4.3 GO:0005829 ... Q89NG0 N/A
    98353 2oof:A (2.2) BS01 FE 3.5.2.7 GO:0005506 ... A0KF84 N/A
    98354 2oog:A (2.2) BS01 ZN 3.1.4.46 GO:0006629 ... A0A0H3K7S1 N/A
    98355 2oog:B (2.2) BS01 ZN 3.1.4.46 GO:0006629 ... A0A0H3K7S1 N/A
    98356 2oog:C (2.2) BS01 ZN 3.1.4.46 GO:0006629 ... A0A0H3K7S1 N/A
    98357 2oog:D (2.2) BS01 ZN 3.1.4.46 GO:0006629 ... A0A0H3K7S1 N/A
    98358 2oog:E (2.2) BS01 ZN 3.1.4.46 GO:0006629 ... A0A0H3K7S1 N/A
    98359 2oog:F (2.2) BS01 ZN 3.1.4.46 GO:0006629 ... A0A0H3K7S1 N/A
    98360 2ooh:A (1.85) BS01 OX3 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 17526494 BindingDB: IC50=1300nM
    98361 2ooh:B (1.85) BS01 OX3 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 17526494 MOAD: ic50=1.3uM
    BindingDB: IC50=1300nM
    98362 2ooh:C (1.85) BS01 OX3 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 17526494 MOAD: ic50=1.3uM
    BindingDB: IC50=1300nM
    98363 2ooh:C (1.85) BS02 OX3 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 17526494 MOAD: ic50=1.3uM
    BindingDB: IC50=1300nM
    98364 2ool:A (2.2) BS01 LBV 2.7.13.3 GO:0006355 ... Q6N5G2 17640891
    98365 2ool:B (2.2) BS01 LBV 2.7.13.3 GO:0006355 ... Q6N5G2 17640891
    98366 2oor:A (2.32) BS01 NAD 7.1.1.1 GO:0003957 ... Q2RSB2 17323922 MOAD: Kd=300uM
    98367 2oor:B (2.32) BS01 NAD 7.1.1.1 GO:0003957 ... Q2RSB2 17323922 MOAD: Kd=300uM
    98368 2oor:C (2.32) BS01 TXP 7.1.1.1 N/A P0C188 17323922 MOAD: Kd=27uM
    98369 2oos:A (2.1) BS01 NAD 1.3.1.9 GO:0004318 ... Q9BJJ9 17567585
    98370 2oos:A (2.1) BS02 JPJ 1.3.1.9 GO:0004318 ... Q9BJJ9 17567585 MOAD: ic50=76nM
    BindingDB: IC50=76nM
    98371 2oos:B (2.1) BS01 NAD 1.3.1.9 GO:0004318 ... Q9BJJ9 17567585
    98372 2oos:B (2.1) BS02 JPJ 1.3.1.9 GO:0004318 ... Q9BJJ9 17567585 MOAD: ic50=76nM
    BindingDB: IC50=76nM
    98373 2oot:A (1.64) BS01 ZN 3.4.17.21 GO:0004180 ... Q04609 17329803
    98374 2oot:A (1.64) BS02 ZN 3.4.17.21 GO:0004180 ... Q04609 17329803
    98375 2oot:A (1.64) BS03 CA 3.4.17.21 GO:0004180 ... Q04609 17329803
    98376 2oov:A (1.7) BS01 CU 1.4.3.21 GO:0005507 ... P12807 17409383
    98377 2oov:B (1.7) BS01 CU 1.4.3.21 GO:0005507 ... P12807 17409383
    98378 2oov:C (1.7) BS01 CU 1.4.3.21 GO:0005507 ... P12807 17409383
    98379 2oov:D (1.7) BS01 CU 1.4.3.21 GO:0005507 ... P12807 17409383
    98380 2oov:E (1.7) BS01 CU 1.4.3.21 GO:0005507 ... P12807 17409383
    98381 2oov:F (1.7) BS01 CU 1.4.3.21 GO:0005507 ... P12807 17409383
    98382 2oow:A (1.75) BS01 OX4 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 17526494
    98383 2oow:A (1.75) BS02 OX4 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 17526494
    98384 2oow:C (1.75) BS01 OX4 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 17526494
    98385 2oox:E (2.6) BS01 AMP ? GO:0005515 ... Q10343 17289942
    98386 2oox:G (2.6) BS01 AMP ? GO:0005515 ... Q10343 17289942
    98387 2ooy:E (2.88) BS01 ATP ? GO:0005515 ... Q10343 17289942
    98388 2ooy:G (2.88) BS01 ATP ? GO:0005515 ... Q10343 17289942
    98389 2ooz:A (1.8) BS01 OX5 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 17526494 MOAD: ic50=7uM
    BindingDB: IC50=7000nM
    98390 2ooz:B (1.8) BS01 OX5 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 17526494 MOAD: ic50=7uM
    BindingDB: IC50=7000nM
    98391 2ooz:B (1.8) BS02 OX5 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 17526494 MOAD: ic50=7uM
    BindingDB: IC50=7000nM
    98392 2ooz:C (1.8) BS01 OX5 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 17526494 BindingDB: IC50=7000nM
    98393 2op0:B (2.8) BS01 NAD 1.3.1.9 GO:0004318 ... Q9BH77 17567585
    98394 2op0:B (2.8) BS02 7PC 1.3.1.9 GO:0004318 ... Q9BH77 17567585
    98395 2op1:A (2.6) BS01 NAD 1.3.1.9 GO:0004318 ... Q9BH77 17567585
    98396 2op1:A (2.6) BS02 8PC 1.3.1.9 GO:0004318 ... Q9BH77 17567585
    98397 2op1:B (2.6) BS01 NAD 1.3.1.9 GO:0004318 ... Q9BH77 17567585
    98398 2op1:B (2.6) BS02 8PC 1.3.1.9 GO:0004318 ... Q9BH77 17567585
    98399 2op3:A (1.6) BS01 TF5 3.4.22.27 GO:0006508 ... P25774 17469812
    98400 2op3:B (1.6) BS01 TF5 3.4.22.27 GO:0006508 ... P25774 17469812

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).