SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1033401 9npr:I (3.53) BS01 BMA N/A N/A O15118 N/A
    1033402 9npu:A (1.63) BS01 dna N/A N/A Q9UGP5 41285786
    1033403 9npu:A (1.63) BS02 dna N/A N/A Q9UGP5 41285786
    1033404 9npu:A (1.63) BS03 dna N/A N/A Q9UGP5 41285786
    1033405 9npu:A (1.63) BS04 DUP N/A N/A Q9UGP5 41285786
    1033406 9npu:A (1.63) BS05 MG N/A N/A Q9UGP5 41285786
    1033407 9npu:A (1.63) BS06 MG N/A N/A Q9UGP5 41285786
    1033408 9npx:A (2.1) BS01 rna N/A GO:0003723 ... N/A 40359110
    1033409 9npx:C (2.1) BS01 rna N/A GO:0003735 ... N/A 40359110
    1033410 9npx:D (2.1) BS01 rna N/A GO:0003723 ... N/A 40359110
    1033411 9npx:F (2.1) BS01 rna N/A GO:0003735 ... N/A 40359110
    1033412 9npx:G (2.1) BS01 rna N/A GO:0003735 ... N/A 40359110
    1033413 9npx:H (2.1) BS01 rna N/A GO:0003735 ... N/A 40359110
    1033414 9npx:I (2.1) BS01 rna N/A GO:0003723 ... N/A 40359110
    1033415 9npx:K (2.1) BS01 rna N/A GO:0003735 ... N/A 40359110
    1033416 9npx:M (2.1) BS01 rna N/A GO:0003735 ... N/A 40359110
    1033417 9npx:N (2.1) BS01 rna N/A GO:0003735 ... N/A 40359110
    1033418 9npx:P (2.1) BS01 rna N/A GO:0003735 ... N/A 40359110
    1033419 9npx:R (2.1) BS01 rna N/A GO:0003735 ... N/A 40359110
    1033420 9npx:W (2.1) BS01 rna N/A GO:0003735 ... N/A 40359110
    1033421 9npx:X (2.1) BS01 rna N/A GO:0003735 ... N/A 40359110
    1033422 9npx:Z (2.1) BS01 rna N/A GO:0003735 ... N/A 40359110
    1033423 9npx:Z (2.1) BS02 ZN N/A GO:0003735 ... N/A 40359110
    1033424 9npx:a (2.1) BS01 rna N/A GO:0003735 ... N/A 40359110
    1033425 9npx:e (2.1) BS01 rna N/A GO:0003735 ... N/A 40359110
    1033426 9npx:h (2.1) BS01 rna N/A GO:0003735 ... N/A 40359110
    1033427 9npx:j (2.1) BS01 rna N/A N/A P0DTD1 40359110
    1033428 9npx:k (2.1) BS01 rna N/A GO:0003723 ... P41567 40359110
    1033429 9npy:B (2.1) BS01 rna N/A GO:0003723 ... N/A 40359110
    1033430 9npy:E (2.1) BS01 rna N/A GO:0003723 ... N/A 40359110
    1033431 9npy:J (2.1) BS01 rna N/A N/A N/A 40359110
    1033432 9npy:L (2.1) BS01 rna N/A GO:0003735 ... N/A 40359110
    1033433 9npy:O (2.1) BS01 rna N/A GO:0003723 ... N/A 40359110
    1033434 9npy:Q (2.1) BS01 rna N/A GO:0003735 ... N/A 40359110
    1033435 9npy:R (2.1) BS01 rna N/A GO:0003735 ... N/A 40359110
    1033436 9npy:S (2.1) BS01 rna N/A GO:0003676 ... N/A 40359110
    1033437 9npy:S (2.1) BS02 MG N/A GO:0003676 ... N/A 40359110
    1033438 9npy:T (2.1) BS01 rna N/A GO:0003735 ... N/A 40359110
    1033439 9npy:U (2.1) BS01 rna N/A GO:0003723 ... N/A 40359110
    1033440 9npy:Y (2.1) BS01 rna N/A N/A N/A 40359110
    1033441 9npy:b (2.1) BS01 rna N/A GO:0003735 ... N/A 40359110
    1033442 9npy:b (2.1) BS02 ZN N/A GO:0003735 ... N/A 40359110
    1033443 9npy:c (2.1) BS01 rna N/A GO:0003735 ... N/A 40359110
    1033444 9npy:d (2.1) BS01 rna N/A GO:0003735 ... N/A 40359110
    1033445 9npy:d (2.1) BS02 ZN N/A GO:0003735 ... N/A 40359110
    1033446 9npy:g (2.1) BS01 rna N/A GO:0043022 ... N/A 40359110
    1033447 9nq5:B (1.74) BS01 PMP N/A N/A Q8ZNC4 N/A
    1033448 9nq5:B (1.74) BS02 ORD N/A N/A Q8ZNC4 N/A
    1033449 9nq7:A (2.72) BS01 rna N/A N/A A0A0A7HFE1 N/A
    1033450 9nq7:B (2.72) BS01 rna N/A N/A A0A811IGE5 N/A
    1033451 9nq7:C (2.72) BS01 rna N/A N/A A0AAN1ZZJ5 N/A
    1033452 9nq7:E (2.72) BS01 rna N/A N/A A0AAN1ZZJ5 N/A
    1033453 9nq7:F (2.72) BS01 rna N/A N/A A0AAN1ZZJ5 N/A
    1033454 9nq7:G (2.72) BS01 rna N/A N/A A0AAN1ZZJ5 N/A
    1033455 9nq7:H (2.72) BS01 rna N/A N/A A0A0A7HF79 N/A
    1033456 9nq7:T (2.72) BS01 rna N/A N/A A0A3G8FB66 N/A
    1033457 9nq9:A (2.97) BS01 Y01 N/A N/A Q9H1D0 41198662
    1033458 9nq9:A (2.97) BS02 Y01 N/A N/A Q9H1D0 41198662
    1033459 9nq9:A (2.97) BS03 MG N/A N/A Q9H1D0 41198662
    1033460 9nq9:A (2.97) BS04 Y01 N/A N/A Q9H1D0 41198662
    1033461 9nq9:A (2.97) BS05 Y01 N/A N/A Q9H1D0 41198662
    1033462 9nq9:B (2.97) BS01 Y01 N/A N/A Q9H1D0 41198662
    1033463 9nq9:B (2.97) BS02 Y01 N/A N/A Q9H1D0 41198662
    1033464 9nq9:B (2.97) BS03 Y01 N/A N/A Q9H1D0 41198662
    1033465 9nq9:B (2.97) BS04 Y01 N/A N/A Q9H1D0 41198662
    1033466 9nq9:B (2.97) BS05 MG N/A N/A Q9H1D0 41198662
    1033467 9nq9:C (2.97) BS01 Y01 N/A N/A Q9H1D0 41198662
    1033468 9nq9:C (2.97) BS02 Y01 N/A N/A Q9H1D0 41198662
    1033469 9nq9:C (2.97) BS03 Y01 N/A N/A Q9H1D0 41198662
    1033470 9nq9:C (2.97) BS04 MG N/A N/A Q9H1D0 41198662
    1033471 9nq9:C (2.97) BS05 Y01 N/A N/A Q9H1D0 41198662
    1033472 9nq9:D (2.97) BS01 Y01 N/A N/A Q9H1D0 41198662
    1033473 9nq9:D (2.97) BS02 Y01 N/A N/A Q9H1D0 41198662
    1033474 9nq9:D (2.97) BS03 Y01 N/A N/A Q9H1D0 41198662
    1033475 9nq9:D (2.97) BS04 Y01 N/A N/A Q9H1D0 41198662
    1033476 9nq9:D (2.97) BS05 MG N/A N/A Q9H1D0 41198662
    1033477 9nqj:A (3.34) BS01 MG N/A GO:0005515 ... P68187 40858559
    1033478 9nqj:A (3.34) BS02 ADP N/A GO:0005515 ... P68187 40858559
    1033479 9nqj:A (3.34) BS03 ADP N/A GO:0005515 ... P68187 40858559
    1033480 9nqj:B (3.34) BS01 ADP N/A GO:0005515 ... P68187 40858559
    1033481 9nqj:B (3.34) BS02 ADP N/A GO:0005515 ... P68187 40858559
    1033482 9nqj:B (3.34) BS03 MG N/A GO:0005515 ... P68187 40858559
    1033483 9nqp:A (3.2) BS01 dna N/A GO:0000166 ... P10189 41202142
    1033484 9nqp:A (3.2) BS02 A1BXB N/A GO:0000166 ... P10189 41202142
    1033485 9nqp:B (3.2) BS01 ZN N/A GO:0006260 ... P10236 41202142
    1033486 9nqu:A (3.16) BS01 dna N/A GO:0000786 ... Q71DI3 40683254
    1033487 9nqu:A (3.16) BS02 dna N/A GO:0000786 ... Q71DI3 40683254
    1033488 9nqu:B (3.16) BS01 dna N/A GO:0000781 ... P62805 40683254
    1033489 9nqu:B (3.16) BS02 dna N/A GO:0000781 ... P62805 40683254
    1033490 9nqu:C (3.16) BS01 dna N/A GO:0000786 ... P0C0S8 40683254
    1033491 9nqu:C (3.16) BS02 dna N/A GO:0000786 ... P0C0S8 40683254
    1033492 9nqu:D (3.16) BS01 dna N/A GO:0000786 ... P62807 40683254
    1033493 9nqu:D (3.16) BS02 dna N/A GO:0000786 ... P62807 40683254
    1033494 9nqu:E (3.16) BS01 dna N/A GO:0000786 ... Q71DI3 40683254
    1033495 9nqu:E (3.16) BS02 dna N/A GO:0000786 ... Q71DI3 40683254
    1033496 9nqu:E (3.16) BS03 OH0 N/A GO:0000786 ... Q71DI3 40683254
    1033497 9nqu:F (3.16) BS01 dna N/A GO:0000781 ... P62805 40683254
    1033498 9nqu:F (3.16) BS02 dna N/A GO:0000781 ... P62805 40683254
    1033499 9nqu:G (3.16) BS01 dna N/A GO:0000786 ... P0C0S8 40683254
    1033500 9nqu:G (3.16) BS02 dna N/A GO:0000786 ... P0C0S8 40683254
    1033501 9nqu:H (3.16) BS01 dna N/A GO:0000786 ... P62807 40683254
    1033502 9nqu:H (3.16) BS02 dna N/A GO:0000786 ... P62807 40683254
    1033503 9nqu:K (3.16) BS01 FE N/A N/A Q5NCY0 40683254
    1033504 9nqu:K (3.16) BS02 ZN N/A N/A Q5NCY0 40683254
    1033505 9nqu:K (3.16) BS03 OH0 N/A N/A Q5NCY0 40683254
    1033506 9nr0:A (1.55) BS01 MN N/A GO:0000303 ... P04179 41128288
    1033507 9nr0:B (1.55) BS01 MN N/A GO:0000303 ... P04179 41128288
    1033508 9nr2:C (2.71) BS01 GAL N/A GO:0019031 ... A0A1L7N0F8 40232794
    1033509 9nr2:C (2.71) BS02 SIA N/A GO:0019031 ... A0A1L7N0F8 40232794
    1033510 9nr3:B (2.93) BS01 peptide N/A GO:0005515 ... Q96SW2 41461925
    1033511 9nr3:B (2.93) BS02 ZN N/A GO:0005515 ... Q96SW2 41461925
    1033512 9nr5:A (2.52) BS01 GAL N/A GO:0019031 ... A0A1L7N0F8 40232794
    1033513 9nr5:A (2.52) BS02 SIA N/A GO:0019031 ... A0A1L7N0F8 40232794
    1033514 9nr5:C (2.52) BS01 SIA N/A GO:0019031 ... A0A1L7N0F8 40232794
    1033515 9nr5:E (2.52) BS01 SIA N/A GO:0019031 ... A0A1L7N0F8 40232794
    1033516 9nr6:G (3.26) BS01 CA N/A N/A Q62609 40550474
    1033517 9nr6:H (3.26) BS01 CA N/A N/A Q62609 40550474
    1033518 9nr7:A (4.18) BS01 ZK1 N/A GO:0005216 ... P19490 40550474
    1033519 9nr7:B (4.18) BS01 ZK1 N/A GO:0005216 ... P19493 40550474
    1033520 9nr7:C (4.18) BS01 ZK1 N/A GO:0005216 ... P19490 40550474
    1033521 9nr7:D (4.18) BS01 ZK1 N/A GO:0005216 ... P19493 40550474
    1033522 9nr9:A (4.22) BS01 ZK1 N/A GO:0005216 ... P19490 40550474
    1033523 9nr9:B (4.22) BS01 ZK1 N/A GO:0005216 ... P19493 40550474
    1033524 9nr9:C (4.22) BS01 ZK1 N/A GO:0005216 ... P19490 40550474
    1033525 9nr9:D (4.22) BS01 ZK1 N/A GO:0005216 ... P19493 40550474
    1033526 9nra:A (4.18) BS01 ZK1 N/A GO:0005216 ... P19490 40550474
    1033527 9nra:B (4.18) BS01 ZK1 N/A GO:0005216 ... P19493 40550474
    1033528 9nra:C (4.18) BS01 ZK1 N/A GO:0005216 ... P19490 40550474
    1033529 9nra:D (4.18) BS01 ZK1 N/A GO:0005216 ... P19493 40550474
    1033530 9nrb:A (2.65) BS01 SIA N/A GO:0019031 ... A0A6M2RJB8 40232794
    1033531 9nrc:A (3.29) BS01 CA N/A GO:0000122 ... Q8IU80 40548380
    1033532 9nrc:A (3.29) BS02 CA N/A GO:0000122 ... Q8IU80 40548380
    1033533 9nrc:A (3.29) BS03 CA N/A GO:0000122 ... Q8IU80 40548380
    1033534 9nri:BC (2.85) BS01 rna N/A GO:0002181 ... Q8TRU4 40914243
    1033535 9nri:BD (2.85) BS01 rna N/A GO:0003723 ... Q8TRU7 40914243
    1033536 9nri:BE (2.85) BS01 rna N/A GO:0003723 ... Q8TRU6 40914243
    1033537 9nri:BF (2.85) BS01 rna N/A GO:0000049 ... Q8TRT4 40914243
    1033538 9nri:BF (2.85) BS02 rna N/A GO:0000049 ... Q8TRT4 40914243
    1033539 9nri:BG (2.85) BS01 rna N/A GO:0002181 ... Q8TRT1 40914243
    1033540 9nri:BH (2.85) BS01 rna N/A GO:0001682 ... Q8TQL9 40914243
    1033541 9nri:BI (2.85) BS01 rna N/A GO:0003735 ... Q8TU90 40914243
    1033542 9nri:BI (2.85) BS02 rna N/A GO:0003735 ... Q8TU90 40914243
    1033543 9nri:BJ (2.85) BS01 rna N/A GO:0003729 ... Q8TT43 40914243
    1033544 9nri:BK (2.85) BS01 rna N/A GO:0003735 ... Q8TRT7 40914243
    1033545 9nri:BL (2.85) BS01 rna N/A GO:0003735 ... Q8TRS5 40914243
    1033546 9nri:BM (2.85) BS01 rna N/A GO:0002181 ... Q8TPX0 40914243
    1033547 9nri:BN (2.85) BS01 rna N/A GO:0000027 ... Q8TRS8 40914243
    1033548 9nri:BN (2.85) BS02 rna N/A GO:0000027 ... Q8TRS8 40914243
    1033549 9nri:BO (2.85) BS01 rna N/A GO:0002181 ... Q8TT44 40914243
    1033550 9nri:BP (2.85) BS01 rna N/A GO:0003723 ... A0A832W9G6 40914243
    1033551 9nri:BQ (2.85) BS01 rna N/A GO:0003735 ... Q8TIN5 40914243
    1033552 9nri:BR (2.85) BS01 rna N/A GO:0003735 ... Q8TQU3 40914243
    1033553 9nri:BS (2.85) BS01 rna N/A GO:0002181 ... Q8TRU2 40914243
    1033554 9nri:BT (2.85) BS01 rna N/A GO:0003735 ... Q8TRU5 40914243
    1033555 9nri:BU (2.85) BS01 rna N/A GO:0002181 ... Q8TRT6 40914243
    1033556 9nri:BV (2.85) BS01 rna N/A GO:0003735 ... Q8TQL7 40914243
    1033557 9nri:BV (2.85) BS02 ZN N/A GO:0003735 ... Q8TQL7 40914243
    1033558 9nri:BW (2.85) BS01 rna N/A GO:0003735 ... Q8TRU0 40914243
    1033559 9nri:BX (2.85) BS01 rna N/A GO:0000463 ... Q8TRS6 40914243
    1033560 9nri:BX (2.85) BS02 rna N/A GO:0000463 ... Q8TRS6 40914243
    1033561 9nri:BY (2.85) BS01 rna N/A GO:0003723 ... Q8TRB9 40914243
    1033562 9nri:BZ (2.85) BS01 rna N/A GO:0002181 ... Q8TIN3 40914243
    1033563 9nri:Ba (2.85) BS01 rna N/A GO:0003735 ... A0A832W8Z7 40914243
    1033564 9nri:Bb (2.85) BS01 rna N/A GO:0003735 ... A0A832SMV9 40914243
    1033565 9nri:Bb (2.85) BS02 ZN N/A GO:0003735 ... A0A832SMV9 40914243
    1033566 9nri:Bc (2.85) BS01 rna N/A GO:0003735 ... Q8TL48 40914243
    1033567 9nri:Bc (2.85) BS02 ZN N/A GO:0003735 ... Q8TL48 40914243
    1033568 9nri:Bd (2.85) BS01 rna N/A GO:0002181 ... Q8TIN2 40914243
    1033569 9nri:Be (2.85) BS01 rna N/A GO:0003735 ... Q8TJ19 40914243
    1033570 9nri:Be (2.85) BS02 ZN N/A GO:0003735 ... Q8TJ19 40914243
    1033571 9nri:Bf (2.85) BS01 rna N/A GO:0003735 ... A0A832W9V9 40914243
    1033572 9nrr:C (1.94) BS01 FUC N/A N/A A0A6M2RJB8 41557749
    1033573 9nrs:A (2.5) BS01 peptide N/A N/A A0A6M2RJB8 41557749
    1033574 9nrs:A (2.5) BS02 SIA N/A N/A A0A6M2RJB8 41557749
    1033575 9nrs:A (2.5) BS03 FUC N/A N/A A0A6M2RJB8 41557749
    1033576 9nrs:B (2.5) BS01 peptide N/A N/A A0A6M2RJB8 41557749
    1033577 9nrs:D (2.5) BS01 peptide N/A N/A A0A6M2RJB8 41557749
    1033578 9nrs:F (2.5) BS01 peptide N/A N/A A0A6M2RJB8 41557749
    1033579 9nrt:A (1.98) BS01 SIA N/A N/A A0A6M2RJB8 41557749
    1033580 9nrt:B (1.98) BS01 peptide N/A N/A A0A6M2RJB8 41557749
    1033581 9nrt:D (1.98) BS01 peptide N/A N/A A0A6M2RJB8 41557749
    1033582 9nrt:E (1.98) BS01 peptide N/A N/A A0A6M2RJB8 41557749
    1033583 9nrt:F (1.98) BS01 peptide N/A N/A A0A6M2RJB8 41557749
    1033584 9nru:A (2.38) BS01 SIA N/A N/A A0A6M2RJB8 41557749
    1033585 9nru:B (2.38) BS01 peptide N/A N/A A0A6M2RJB8 41557749
    1033586 9nru:D (2.38) BS01 peptide N/A N/A A0A6M2RJB8 41557749
    1033587 9nru:E (2.38) BS01 peptide N/A N/A A0A6M2RJB8 41557749
    1033588 9nru:F (2.38) BS01 peptide N/A N/A A0A6M2RJB8 41557749
    1033589 9nrv:A (2.89) BS01 SIA N/A N/A A0A6M2RJB8 41557749
    1033590 9nrv:C (2.89) BS01 SO4 N/A N/A A0A6M2RJB8 41557749
    1033591 9nrv:C (2.89) BS02 SO4 N/A N/A A0A6M2RJB8 41557749
    1033592 9nrv:D (2.89) BS01 SO4 N/A N/A A0A6M2RJB8 41557749
    1033593 9nrv:E (2.89) BS01 SO4 N/A N/A A0A6M2RJB8 41557749
    1033594 9ns5:A (3.19) BS01 ZN N/A GO:0000750 ... Q12154 40902977
    1033595 9ns5:A (3.19) BS02 ATP N/A GO:0000750 ... Q12154 40902977
    1033596 9ns5:A (3.19) BS03 MG N/A GO:0000750 ... Q12154 40902977
    1033597 9ns5:A (3.19) BS04 ATP N/A GO:0000750 ... Q12154 40902977
    1033598 9ns5:D (3.19) BS01 ATP N/A GO:0000750 ... Q12154 40902977
    1033599 9ns5:D (3.19) BS02 ATP N/A GO:0000750 ... Q12154 40902977
    1033600 9ns5:D (3.19) BS03 MG N/A GO:0000750 ... Q12154 40902977

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).