SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    108201 2v9x:I (2.2) BS01 DUT 3.5.4.13 GO:0005829 ... P28248 17996716
    108202 2v9x:I (2.2) BS02 DUT 3.5.4.13 GO:0005829 ... P28248 17996716
    108203 2v9x:J (2.2) BS01 DUT 3.5.4.13 GO:0005829 ... P28248 17996716
    108204 2v9x:J (2.2) BS02 DUT 3.5.4.13 GO:0005829 ... P28248 17996716
    108205 2v9x:K (2.2) BS01 DUT 3.5.4.13 GO:0005829 ... P28248 17996716
    108206 2v9x:K (2.2) BS02 DUT 3.5.4.13 GO:0005829 ... P28248 17996716
    108207 2v9x:L (2.2) BS01 DUT 3.5.4.13 GO:0005829 ... P28248 17996716
    108208 2v9x:L (2.2) BS02 DUT 3.5.4.13 GO:0005829 ... P28248 17996716
    108209 2va1:A (2.5) BS01 PO4 2.7.4.22 GO:0005737 ... Q9PPX6 18021254
    108210 2va1:B (2.5) BS01 PO4 2.7.4.22 GO:0005737 ... Q9PPX6 18021254
    108211 2va1:C (2.5) BS01 PO4 2.7.4.22 GO:0005737 ... Q9PPX6 18021254
    108212 2va1:D (2.5) BS01 PO4 2.7.4.22 GO:0005737 ... Q9PPX6 18021254
    108213 2va1:E (2.5) BS01 PO4 2.7.4.22 GO:0005737 ... Q9PPX6 18021254
    108214 2va1:F (2.5) BS01 PO4 2.7.4.22 GO:0005737 ... Q9PPX6 18021254
    108215 2va2:A (2.8) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 17951245
    108216 2va2:A (2.8) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 17951245
    108217 2va2:A (2.8) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 17951245
    108218 2va2:A (2.8) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 17951245
    108219 2va2:A (2.8) BS05 DCT 2.7.7.7 GO:0000287 ... Q97W02 17951245
    108220 2va2:B (2.8) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 17951245
    108221 2va2:B (2.8) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 17951245
    108222 2va2:B (2.8) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 17951245
    108223 2va2:B (2.8) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 17951245
    108224 2va2:B (2.8) BS05 DCT 2.7.7.7 GO:0000287 ... Q97W02 17951245
    108225 2va3:A (2.98) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 17951245
    108226 2va3:A (2.98) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 17951245
    108227 2va3:A (2.98) BS03 DGT 2.7.7.7 GO:0000287 ... Q97W02 17951245
    108228 2va3:A (2.98) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 17951245
    108229 2va3:A (2.98) BS05 CA 2.7.7.7 GO:0000287 ... Q97W02 17951245
    108230 2va5:A (2.75) BS01 C8C 3.4.23.46 GO:0004190 ... P56817 17985862 BindingDB: IC50=130000nM
    108231 2va6:A (2.5) BS01 H24 3.4.23.46 GO:0004190 ... P56817 17985862 MOAD: ic50=0.67uM
    BindingDB: IC50=91000nM
    108232 2va7:A (2.2) BS01 C27 3.4.23.46 GO:0004190 ... P56817 17985862 MOAD: ic50=0.2uM
    BindingDB: IC50=200nM
    108233 2vaa:A (2.3) BS01 peptide ? N/A P01901 1323877
    108234 2vab:A (2.5) BS01 peptide ? N/A P01901 1323877
    108235 2vac:A (1.7) BS01 ZN ? GO:0003779 ... Q6IBS0 N/A
    108236 2vac:A (1.7) BS02 ZN ? GO:0003779 ... Q6IBS0 N/A
    108237 2vad:A (1.59) BS01 ZN ? GO:0006091 ... Q9U6Y8 17962222
    108238 2vad:A (1.59) BS02 ZN ? GO:0006091 ... Q9U6Y8 17962222
    108239 2vad:A (1.59) BS03 ZN ? GO:0006091 ... Q9U6Y8 17962222
    108240 2vag:A (1.8) BS01 V25 2.7.12.1 GO:0004672 ... P49759 21276940 MOAD: ic50=19.7nM
    108241 2vao:A (2.8) BS01 FAD 1.1.3.38 GO:0003824 ... P56216 9261083
    108242 2vao:A (2.8) BS02 EUG 1.1.3.38 GO:0003824 ... P56216 9261083
    108243 2vao:B (2.8) BS01 FAD 1.1.3.38 GO:0003824 ... P56216 9261083
    108244 2vao:B (2.8) BS02 EUG 1.1.3.38 GO:0003824 ... P56216 9261083
    108245 2vap:A (1.7) BS01 GDP ? GO:0003924 ... Q57816 17900614
    108246 2vaq:A (3.01) BS01 VAW 4.3.3.2 N/A P68175 18081287
    108247 2vaq:B (3.01) BS01 VAW 4.3.3.2 N/A P68175 18081287
    108248 2var:A (2.1) BS01 KDG 2.7.1.178 GO:0000166 ... Q97U29 19018105
    108249 2var:A (2.1) BS02 KDF 2.7.1.178 GO:0000166 ... Q97U29 19018105
    108250 2var:A (2.1) BS03 ANP 2.7.1.178 GO:0000166 ... Q97U29 19018105
    108251 2var:A (2.1) BS04 AMP 2.7.1.178 GO:0000166 ... Q97U29 19018105
    108252 2var:B (2.1) BS01 KDG 2.7.1.178 GO:0000166 ... Q97U29 19018105
    108253 2var:B (2.1) BS02 KDF 2.7.1.178 GO:0000166 ... Q97U29 19018105
    108254 2var:B (2.1) BS03 ANP 2.7.1.178 GO:0000166 ... Q97U29 19018105
    108255 2var:B (2.1) BS04 AMP 2.7.1.178 GO:0000166 ... Q97U29 19018105
    108256 2var:C (2.1) BS01 KDG 2.7.1.178 GO:0000166 ... Q97U29 19018105
    108257 2var:C (2.1) BS02 KDF 2.7.1.178 GO:0000166 ... Q97U29 19018105
    108258 2var:C (2.1) BS03 ANP 2.7.1.178 GO:0000166 ... Q97U29 19018105
    108259 2var:C (2.1) BS04 AMP 2.7.1.178 GO:0000166 ... Q97U29 19018105
    108260 2vas:A (2.4) BS01 ADP ? GO:0003774 ... Q29122 18046460
    108261 2vas:A (2.4) BS02 BEF ? GO:0003774 ... Q29122 18046460
    108262 2vas:A (2.4) BS03 MG ? GO:0003774 ... Q29122 18046460
    108263 2vas:B (2.4) BS01 CA ? GO:0000226 ... P62152 18046460
    108264 2vas:B (2.4) BS02 CA ? GO:0000226 ... P62152 18046460
    108265 2vas:B (2.4) BS03 CA ? GO:0000226 ... P62152 18046460
    108266 2vas:B (2.4) BS04 CA ? GO:0000226 ... P62152 18046460
    108267 2vat:A (2.2) BS01 COA 2.3.1.175 GO:0004414 ... P39058 18279889
    108268 2vat:B (2.2) BS01 COA 2.3.1.175 GO:0004414 ... P39058 18279889
    108269 2vat:C (2.2) BS01 COA 2.3.1.175 GO:0004414 ... P39058 18279889
    108270 2vat:D (2.2) BS01 COA 2.3.1.175 GO:0004414 ... P39058 18279889
    108271 2vat:E (2.2) BS01 COA 2.3.1.175 GO:0004414 ... P39058 18279889
    108272 2vat:F (2.2) BS01 COA 2.3.1.175 GO:0004414 ... P39058 18279889
    108273 2vat:G (2.2) BS01 COA 2.3.1.175 GO:0004414 ... P39058 18279889
    108274 2vat:H (2.2) BS01 COA 2.3.1.175 GO:0004414 ... P39058 18279889
    108275 2vat:I (2.2) BS01 COA 2.3.1.175 GO:0004414 ... P39058 18279889
    108276 2vat:J (2.2) BS01 COA 2.3.1.175 GO:0004414 ... P39058 18279889
    108277 2vat:K (2.2) BS01 COA 2.3.1.175 GO:0004414 ... P39058 18279889
    108278 2vat:L (2.2) BS01 COA 2.3.1.175 GO:0004414 ... P39058 18279889
    108279 2vau:A (1.8) BS01 FE2 1.21.3.1 GO:0005506 ... P05326 18620394
    108280 2vau:A (1.8) BS02 V20 1.21.3.1 GO:0005506 ... P05326 18620394
    108281 2vav:A (2.5) BS01 CSC 2.3.1.175 GO:0004414 ... P39058 18279889
    108282 2vav:B (2.5) BS01 CSC 2.3.1.175 GO:0004414 ... P39058 18279889
    108283 2vav:C (2.5) BS01 CSC 2.3.1.175 GO:0004414 ... P39058 18279889
    108284 2vav:D (2.5) BS01 CSC 2.3.1.175 GO:0004414 ... P39058 18279889
    108285 2vav:E (2.5) BS01 CSC 2.3.1.175 GO:0004414 ... P39058 18279889
    108286 2vav:F (2.5) BS01 CSC 2.3.1.175 GO:0004414 ... P39058 18279889
    108287 2vav:G (2.5) BS01 CSC 2.3.1.175 GO:0004414 ... P39058 18279889
    108288 2vav:H (2.5) BS01 CSC 2.3.1.175 GO:0004414 ... P39058 18279889
    108289 2vav:I (2.5) BS01 CSC 2.3.1.175 GO:0004414 ... P39058 18279889
    108290 2vav:J (2.5) BS01 CSC 2.3.1.175 GO:0004414 ... P39058 18279889
    108291 2vav:K (2.5) BS01 CSC 2.3.1.175 GO:0004414 ... P39058 18279889
    108292 2vav:L (2.5) BS01 CSC 2.3.1.175 GO:0004414 ... P39058 18279889
    108293 2vaw:A (2.9) BS01 GDP ? GO:0003924 ... P47204 17900614
    108294 2vax:A (2.6) BS01 CSC 2.3.1.175 GO:0004414 ... P39058 18279889
    108295 2vax:B (2.6) BS01 CSC 2.3.1.175 GO:0004414 ... P39058 18279889
    108296 2vax:C (2.6) BS01 CSC 2.3.1.175 GO:0004414 ... P39058 18279889
    108297 2vax:D (2.6) BS01 CSC 2.3.1.175 GO:0004414 ... P39058 18279889
    108298 2vax:E (2.6) BS01 CSC 2.3.1.175 GO:0004414 ... P39058 18279889
    108299 2vax:F (2.6) BS01 CSC 2.3.1.175 GO:0004414 ... P39058 18279889
    108300 2vax:G (2.6) BS01 CSC 2.3.1.175 GO:0004414 ... P39058 18279889
    108301 2vax:H (2.6) BS01 CSC 2.3.1.175 GO:0004414 ... P39058 18279889
    108302 2vax:I (2.6) BS01 CSC 2.3.1.175 GO:0004414 ... P39058 18279889
    108303 2vax:J (2.6) BS01 CSC 2.3.1.175 GO:0004414 ... P39058 18279889
    108304 2vax:K (2.6) BS01 CSC 2.3.1.175 GO:0004414 ... P39058 18279889
    108305 2vax:L (2.6) BS01 CSC 2.3.1.175 GO:0004414 ... P39058 18279889
    108306 2vay:A (1.94) BS01 peptide ? GO:0000922 ... P0DP23 19473981
    108307 2vay:A (1.94) BS02 CA ? GO:0000922 ... P0DP23 19473981
    108308 2vay:A (1.94) BS03 CA ? GO:0000922 ... P0DP23 19473981
    108309 2vay:A (1.94) BS04 CA ? GO:0000922 ... P0DP23 19473981
    108310 2vay:A (1.94) BS05 CA ? GO:0000922 ... P0DP23 19473981
    108311 2vb1:A (0.65) BS01 ACT 3.2.1.17 GO:0003796 ... P00698 18084073
    108312 2vb1:A (0.65) BS02 EDO 3.2.1.17 GO:0003796 ... P00698 18084073
    108313 2vb1:A (0.65) BS03 NO3 3.2.1.17 GO:0003796 ... P00698 18084073
    108314 2vb1:A (0.65) BS04 NO3 3.2.1.17 GO:0003796 ... P00698 18084073
    108315 2vb1:A (0.65) BS05 NO3 3.2.1.17 GO:0003796 ... P00698 18084073
    108316 2vb1:A (0.65) BS06 NO3 3.2.1.17 GO:0003796 ... P00698 18084073
    108317 2vb1:A (0.65) BS07 NO3 3.2.1.17 GO:0003796 ... P00698 18084073
    108318 2vb1:A (0.65) BS08 NO3 3.2.1.17 GO:0003796 ... P00698 18084073
    108319 2vb1:A (0.65) BS09 NO3 3.2.1.17 GO:0003796 ... P00698 18084073
    108320 2vb2:X (1.7) BS01 CU ? GO:0005507 ... P77214 18157124
    108321 2vb6:A (2.3) BS01 ADP ? GO:0003774 ... Q29122 18046460
    108322 2vb6:A (2.3) BS02 BEF ? GO:0003774 ... Q29122 18046460
    108323 2vb6:A (2.3) BS03 MG ? GO:0003774 ... Q29122 18046460
    108324 2vb6:B (2.3) BS01 CA ? GO:0005509 ... P62149 18046460
    108325 2vb6:B (2.3) BS02 CA ? GO:0005509 ... P62149 18046460
    108326 2vb6:B (2.3) BS03 CA ? GO:0005509 ... P62149 18046460
    108327 2vb6:B (2.3) BS04 CA ? GO:0005509 ... P62149 18046460
    108328 2vb8:A (1.52) BS01 TLM 2.3.1.41 GO:0004315 ... P0A953 18084068 BindingDB: IC50=12000nM
    108329 2vb8:B (1.52) BS01 TLM 2.3.1.41 GO:0004315 ... P0A953 18084068 BindingDB: IC50=12000nM
    108330 2vb8:C (1.52) BS01 TLM 2.3.1.41 GO:0004315 ... P0A953 18084068 BindingDB: IC50=12000nM
    108331 2vb8:D (1.52) BS01 TLM 2.3.1.41 GO:0004315 ... P0A953 18084068 BindingDB: IC50=12000nM
    108332 2vba:A (1.36) BS01 P4T 2.3.1.41 GO:0004315 ... P0A953 18084068 MOAD: Kd=25uM
    108333 2vba:B (1.36) BS01 P4T 2.3.1.41 GO:0004315 ... P0A953 18084068
    108334 2vbb:A (1.4) BS01 VAZ 1.21.3.1 GO:0005506 ... P05326 18620394
    108335 2vbb:A (1.4) BS02 FE2 1.21.3.1 GO:0005506 ... P05326 18620394
    108336 2vbc:A (3.15) BS01 peptide 3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0003723 ... Q2TN89 17942558
    108337 2vbd:A (2.0) BS01 FE2 1.21.3.1 GO:0005506 ... P05326 20024142
    108338 2vbd:A (2.0) BS02 V10 1.21.3.1 GO:0005506 ... P05326 20024142
    108339 2vbe:A (1.98) BS01 MN 3.2.1.- N/A Q9XJP3 18462681
    108340 2vbf:A (1.6) BS01 TPP ? GO:0000287 ... Q6QBS4 18084069
    108341 2vbf:A (1.6) BS02 MG ? GO:0000287 ... Q6QBS4 18084069
    108342 2vbf:A (1.6) BS03 TPP ? GO:0000287 ... Q6QBS4 18084069
    108343 2vbf:B (1.6) BS01 MG ? GO:0000287 ... Q6QBS4 18084069
    108344 2vbf:B (1.6) BS02 TPP ? GO:0000287 ... Q6QBS4 18084069
    108345 2vbf:B (1.6) BS03 TPP ? GO:0000287 ... Q6QBS4 18084069
    108346 2vbg:A (1.8) BS01 MG ? GO:0000287 ... Q6QBS4 18084069
    108347 2vbg:A (1.8) BS02 R1T ? GO:0000287 ... Q6QBS4 18084069
    108348 2vbg:A (1.8) BS03 R1T ? GO:0000287 ... Q6QBS4 18084069
    108349 2vbg:B (1.8) BS01 R1T ? GO:0000287 ... Q6QBS4 18084069
    108350 2vbg:B (1.8) BS02 MG ? GO:0000287 ... Q6QBS4 18084069
    108351 2vbg:B (1.8) BS03 R1T ? GO:0000287 ... Q6QBS4 18084069
    108352 2vbi:A (2.75) BS01 MG 4.1.1.1 GO:0000287 ... Q8L388 N/A
    108353 2vbi:A (2.75) BS02 TPP 4.1.1.1 GO:0000287 ... Q8L388 N/A
    108354 2vbi:A (2.75) BS03 TPP 4.1.1.1 GO:0000287 ... Q8L388 N/A
    108355 2vbi:B (2.75) BS01 TPP 4.1.1.1 GO:0000287 ... Q8L388 N/A
    108356 2vbi:B (2.75) BS02 MG 4.1.1.1 GO:0000287 ... Q8L388 N/A
    108357 2vbi:B (2.75) BS03 TPP 4.1.1.1 GO:0000287 ... Q8L388 N/A
    108358 2vbi:C (2.75) BS01 MG 4.1.1.1 GO:0000287 ... Q8L388 N/A
    108359 2vbi:C (2.75) BS02 TPP 4.1.1.1 GO:0000287 ... Q8L388 N/A
    108360 2vbi:C (2.75) BS03 TPP 4.1.1.1 GO:0000287 ... Q8L388 N/A
    108361 2vbi:D (2.75) BS01 TPP 4.1.1.1 GO:0000287 ... Q8L388 N/A
    108362 2vbi:D (2.75) BS02 MG 4.1.1.1 GO:0000287 ... Q8L388 N/A
    108363 2vbi:D (2.75) BS03 TPP 4.1.1.1 GO:0000287 ... Q8L388 N/A
    108364 2vbi:E (2.75) BS01 MG 4.1.1.1 GO:0000287 ... Q8L388 N/A
    108365 2vbi:E (2.75) BS02 TPP 4.1.1.1 GO:0000287 ... Q8L388 N/A
    108366 2vbi:E (2.75) BS03 TPP 4.1.1.1 GO:0000287 ... Q8L388 N/A
    108367 2vbi:F (2.75) BS01 TPP 4.1.1.1 GO:0000287 ... Q8L388 N/A
    108368 2vbi:F (2.75) BS02 MG 4.1.1.1 GO:0000287 ... Q8L388 N/A
    108369 2vbi:F (2.75) BS03 TPP 4.1.1.1 GO:0000287 ... Q8L388 N/A
    108370 2vbi:G (2.75) BS01 MG 4.1.1.1 GO:0000287 ... Q8L388 N/A
    108371 2vbi:G (2.75) BS02 TPP 4.1.1.1 GO:0000287 ... Q8L388 N/A
    108372 2vbi:G (2.75) BS03 TPP 4.1.1.1 GO:0000287 ... Q8L388 N/A
    108373 2vbi:H (2.75) BS01 TPP 4.1.1.1 GO:0000287 ... Q8L388 N/A
    108374 2vbi:H (2.75) BS02 MG 4.1.1.1 GO:0000287 ... Q8L388 N/A
    108375 2vbi:H (2.75) BS03 TPP 4.1.1.1 GO:0000287 ... Q8L388 N/A
    108376 2vbj:A (1.95) BS01 dna 3.1.-.- GO:0004519 ... P05725 18987743
    108377 2vbj:A (1.95) BS02 dna 3.1.-.- GO:0004519 ... P05725 18987743
    108378 2vbj:B (1.95) BS01 dna 3.1.-.- GO:0004519 ... P05725 18987743
    108379 2vbj:B (1.95) BS02 dna 3.1.-.- GO:0004519 ... P05725 18987743
    108380 2vbl:A (1.8) BS01 dna 3.1.-.- GO:0004519 ... P05725 18987743
    108381 2vbl:A (1.8) BS02 dna 3.1.-.- GO:0004519 ... P05725 18987743
    108382 2vbl:A (1.8) BS03 dna 3.1.-.- GO:0004519 ... P05725 18987743
    108383 2vbl:B (1.8) BS01 dna 3.1.-.- GO:0004519 ... P05725 18987743
    108384 2vbl:B (1.8) BS02 dna 3.1.-.- GO:0004519 ... P05725 18987743
    108385 2vbl:B (1.8) BS03 dna 3.1.-.- GO:0004519 ... P05725 18987743
    108386 2vbm:A (2.0) BS01 RAM 3.2.1.- N/A Q9XJP3 18462681
    108387 2vbm:A (2.0) BS02 MN 3.2.1.- N/A Q9XJP3 18462681
    108388 2vbn:A (1.9) BS01 dna 3.1.-.- GO:0004519 ... P05725 18987743
    108389 2vbn:A (1.9) BS02 dna 3.1.-.- GO:0004519 ... P05725 18987743
    108390 2vbn:A (1.9) BS03 dna 3.1.-.- GO:0004519 ... P05725 18987743
    108391 2vbn:A (1.9) BS04 CA 3.1.-.- GO:0004519 ... P05725 18987743
    108392 2vbn:B (1.9) BS01 dna 3.1.-.- GO:0004519 ... P05725 18987743
    108393 2vbn:B (1.9) BS02 dna 3.1.-.- GO:0004519 ... P05725 18987743
    108394 2vbn:B (1.9) BS03 dna 3.1.-.- GO:0004519 ... P05725 18987743
    108395 2vbn:B (1.9) BS04 CA 3.1.-.- GO:0004519 ... P05725 18987743
    108396 2vbo:A (1.8) BS01 dna 3.1.-.- GO:0004519 ... P05725 18987743
    108397 2vbo:A (1.8) BS02 dna 3.1.-.- GO:0004519 ... P05725 18987743
    108398 2vbo:A (1.8) BS03 CA 3.1.-.- GO:0004519 ... P05725 18987743
    108399 2vbo:B (1.8) BS01 dna 3.1.-.- GO:0004519 ... P05725 18987743
    108400 2vbo:B (1.8) BS02 dna 3.1.-.- GO:0004519 ... P05725 18987743

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).