SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603 604 605 606 607 > >>
    Go to page

    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    119201 2yeq:B (1.93) BS02 CA 3.1.3.1 GO:0004035 ... P42251 25217636
    119202 2yeq:B (1.93) BS03 CA 3.1.3.1 GO:0004035 ... P42251 25217636
    119203 2yeq:B (1.93) BS04 PO4 3.1.3.1 GO:0004035 ... P42251 25217636
    119204 2yer:A (1.83) BS01 TQ1 2.7.11.1 GO:0000077 ... O14757 22342147 MOAD: ic50=0.02uM
    119205 2yes:A (1.9) BS01 MN ? GO:0016779 ... O53706 N/A
    119206 2yes:B (1.9) BS01 MN ? GO:0016779 ... O53706 N/A
    119207 2yet:A (1.502) BS01 CU 3.2.1.4 GO:0005576 ... G3XAP7 21876164
    119208 2yet:B (1.502) BS01 CU 3.2.1.4 GO:0005576 ... G3XAP7 21876164
    119209 2yev:A (2.36) BS01 5PL 7.1.1.9 GO:0004129 ... P98005 22763450
    119210 2yev:A (2.36) BS02 HAS 7.1.1.9 GO:0004129 ... P98005 22763450
    119211 2yev:A (2.36) BS03 HAS 7.1.1.9 GO:0004129 ... P98005 22763450
    119212 2yev:A (2.36) BS04 CU 7.1.1.9 GO:0004129 ... P98005 22763450
    119213 2yev:A (2.36) BS05 MG 7.1.1.9 GO:0004129 ... P98005 22763450
    119214 2yev:B (2.36) BS01 HAS 7.1.1.9 GO:0004129 ... Q5SLI2 22763450
    119215 2yev:B (2.36) BS02 CUA 7.1.1.9 GO:0004129 ... Q5SLI2 22763450
    119216 2yev:B (2.36) BS03 HEC 7.1.1.9 GO:0004129 ... Q5SLI2 22763450
    119217 2yev:D (2.36) BS01 5PL 7.1.1.9 GO:0004129 ... P98005 22763450
    119218 2yev:D (2.36) BS02 HAS 7.1.1.9 GO:0004129 ... P98005 22763450
    119219 2yev:D (2.36) BS03 HAS 7.1.1.9 GO:0004129 ... P98005 22763450
    119220 2yev:D (2.36) BS04 CU 7.1.1.9 GO:0004129 ... P98005 22763450
    119221 2yev:D (2.36) BS05 MG 7.1.1.9 GO:0004129 ... P98005 22763450
    119222 2yev:E (2.36) BS01 HAS 7.1.1.9 GO:0004129 ... Q5SLI2 22763450
    119223 2yev:E (2.36) BS02 CUA 7.1.1.9 GO:0004129 ... Q5SLI2 22763450
    119224 2yev:E (2.36) BS03 HEC 7.1.1.9 GO:0004129 ... Q5SLI2 22763450
    119225 2yex:A (1.3) BS01 YEX 2.7.11.1 GO:0000077 ... O14757 22342147 MOAD: ic50=0.0001uM
    BindingDB: IC50=0.100000nM
    119226 2yez:A (2.9) BS01 peptide ? N/A Q95601 25860507
    119227 2yf3:A (2.0) BS01 MN 3.6.1.19 GO:0047429 ... Q9RS96 21733847
    119228 2yf3:B (2.0) BS01 MN 3.6.1.19 GO:0047429 ... Q9RS96 21733847
    119229 2yf3:C (2.0) BS01 MN 3.6.1.19 GO:0047429 ... Q9RS96 21733847
    119230 2yf3:D (2.0) BS01 MN 3.6.1.19 GO:0047429 ... Q9RS96 21733847
    119231 2yf3:E (2.0) BS01 MN 3.6.1.19 GO:0047429 ... Q9RS96 21733847
    119232 2yf3:F (2.0) BS01 MN 3.6.1.19 GO:0047429 ... Q9RS96 21733847
    119233 2yfa:A (1.8) BS01 ACT ? N/A Q88E10 23112148
    119234 2yfa:B (1.8) BS01 ACT ? N/A Q88E10 23112148
    119235 2yfb:A (1.9) BS01 ACT ? N/A Q88E10 23112148
    119236 2yfb:B (1.9) BS01 ACT ? N/A Q88E10 23112148
    119237 2yfc:A (2.01) BS01 UMP 3.6.1.19 GO:0047429 ... Q9RS96 21733847
    119238 2yfc:A (2.01) BS02 MN 3.6.1.19 GO:0047429 ... Q9RS96 21733847
    119239 2yfc:B (2.01) BS01 UMP 3.6.1.19 GO:0047429 ... Q9RS96 21733847
    119240 2yfc:B (2.01) BS02 MN 3.6.1.19 GO:0047429 ... Q9RS96 21733847
    119241 2yfc:B (2.01) BS03 MN 3.6.1.19 GO:0047429 ... Q9RS96 21733847
    119242 2yfc:C (2.01) BS01 UMP 3.6.1.19 GO:0047429 ... Q9RS96 21733847
    119243 2yfc:C (2.01) BS02 MN 3.6.1.19 GO:0047429 ... Q9RS96 21733847
    119244 2yfc:D (2.01) BS01 UMP 3.6.1.19 GO:0047429 ... Q9RS96 21733847
    119245 2yfc:D (2.01) BS02 MN 3.6.1.19 GO:0047429 ... Q9RS96 21733847
    119246 2yfc:D (2.01) BS03 MN 3.6.1.19 GO:0047429 ... Q9RS96 21733847
    119247 2yfd:A (1.767) BS01 MG 3.6.1.19 GO:0047429 ... Q9RS96 21733847
    119248 2yfd:A (1.767) BS02 UMP 3.6.1.19 GO:0047429 ... Q9RS96 21733847
    119249 2yfd:B (1.767) BS01 UMP 3.6.1.19 GO:0047429 ... Q9RS96 21733847
    119250 2yfd:B (1.767) BS02 MG 3.6.1.19 GO:0047429 ... Q9RS96 21733847
    119251 2yfd:C (1.767) BS01 MG 3.6.1.19 GO:0047429 ... Q9RS96 21733847
    119252 2yfd:C (1.767) BS02 UMP 3.6.1.19 GO:0047429 ... Q9RS96 21733847
    119253 2yfd:D (1.767) BS01 UMP 3.6.1.19 GO:0047429 ... Q9RS96 21733847
    119254 2yfd:D (1.767) BS02 MG 3.6.1.19 GO:0047429 ... Q9RS96 21733847
    119255 2yfe:A (2.0) BS01 YFE ? GO:0003677 ... P37231 22509006 MOAD: Ki=0.236uM
    BindingDB: EC50=458nM, Kd=236nM
    119256 2yfe:B (2.0) BS01 YFE ? GO:0003677 ... P37231 22509006 MOAD: Ki=0.236uM
    BindingDB: EC50=458nM, Kd=236nM
    119257 2yfi:A (2.15) BS01 FES 1.14.12.18 GO:0005506 ... P37333 21653696
    119258 2yfi:A (2.15) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21653696
    119259 2yfi:C (2.15) BS01 FES 1.14.12.18 GO:0005506 ... P37333 21653696
    119260 2yfi:C (2.15) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21653696
    119261 2yfi:E (2.15) BS01 FES 1.14.12.18 GO:0005506 ... P37333 21653696
    119262 2yfi:E (2.15) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21653696
    119263 2yfi:G (2.15) BS01 FES 1.14.12.18 GO:0005506 ... P37333 21653696
    119264 2yfi:G (2.15) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21653696
    119265 2yfi:I (2.15) BS01 FES 1.14.12.18 GO:0005506 ... P37333 21653696
    119266 2yfi:I (2.15) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21653696
    119267 2yfi:K (2.15) BS01 FES 1.14.12.18 GO:0005506 ... P37333 21653696
    119268 2yfi:K (2.15) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21653696
    119269 2yfj:A (2.15) BS01 FES 1.14.12.18 GO:0005506 ... P37333 21653696
    119270 2yfj:A (2.15) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21653696
    119271 2yfj:A (2.15) BS03 1IT 1.14.12.18 GO:0005506 ... P37333 21653696
    119272 2yfj:C (2.15) BS01 FES 1.14.12.18 GO:0005506 ... P37333 21653696
    119273 2yfj:C (2.15) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21653696
    119274 2yfj:C (2.15) BS03 1IT 1.14.12.18 GO:0005506 ... P37333 21653696
    119275 2yfj:E (2.15) BS01 FES 1.14.12.18 GO:0005506 ... P37333 21653696
    119276 2yfj:E (2.15) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21653696
    119277 2yfj:E (2.15) BS03 1IT 1.14.12.18 GO:0005506 ... P37333 21653696
    119278 2yfj:G (2.15) BS01 FES 1.14.12.18 GO:0005506 ... P37333 21653696
    119279 2yfj:G (2.15) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21653696
    119280 2yfj:I (2.15) BS01 FES 1.14.12.18 GO:0005506 ... P37333 21653696
    119281 2yfj:I (2.15) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21653696
    119282 2yfj:K (2.15) BS01 FES 1.14.12.18 GO:0005506 ... P37333 21653696
    119283 2yfj:K (2.15) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 21653696
    119284 2yfl:A (2.6) BS01 FES 1.14.12.18 GO:0005506 ... P37333 22546558
    119285 2yfl:A (2.6) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 22546558
    119286 2yfl:A (2.6) BS03 DC4 1.14.12.18 GO:0005506 ... P37333 22546558
    119287 2yfl:C (2.6) BS01 FES 1.14.12.18 GO:0005506 ... P37333 22546558
    119288 2yfl:C (2.6) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 22546558
    119289 2yfl:C (2.6) BS03 DC4 1.14.12.18 GO:0005506 ... P37333 22546558
    119290 2yfl:E (2.6) BS01 FES 1.14.12.18 GO:0005506 ... P37333 22546558
    119291 2yfl:E (2.6) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 22546558
    119292 2yfl:G (2.6) BS01 FES 1.14.12.18 GO:0005506 ... P37333 22546558
    119293 2yfl:G (2.6) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 22546558
    119294 2yfl:I (2.6) BS01 FES 1.14.12.18 GO:0005506 ... P37333 22546558
    119295 2yfl:I (2.6) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 22546558
    119296 2yfl:K (2.6) BS01 FES 1.14.12.18 GO:0005506 ... P37333 22546558
    119297 2yfl:K (2.6) BS02 FE2 1.14.12.18 GO:0005506 ... P37333 22546558
    119298 2yfn:A (1.45) BS01 MG 2.7.-.-
    3.2.1.22
    GO:0004553 ... G4T4R7 21931163
    119299 2yfo:A (1.35) BS01 GLA 2.7.-.-
    3.2.1.22
    GO:0004553 ... G4T4R7 21931163
    119300 2yfo:A (1.35) BS02 GAL 2.7.-.-
    3.2.1.22
    GO:0004553 ... G4T4R7 21931163
    119301 2yfr:A (1.75) BS01 CA 2.4.1.9 GO:0009758 ... Q74K42 21801732
    119302 2yfs:A (2.6) BS01 GLC 2.4.1.9 GO:0009758 ... Q74K42 21801732
    119303 2yfs:A (2.6) BS02 FRU 2.4.1.9 GO:0009758 ... Q74K42 21801732
    119304 2yfs:A (2.6) BS03 FRU 2.4.1.9 GO:0009758 ... Q74K42 21801732
    119305 2yfs:A (2.6) BS04 CA 2.4.1.9 GO:0009758 ... Q74K42 21801732
    119306 2yfs:A (2.6) BS05 CA 2.4.1.9 GO:0009758 ... Q74K42 21801732
    119307 2yft:A (1.85) BS01 GLC 2.4.1.9 GO:0009758 ... Q74K42 21801732
    119308 2yft:A (1.85) BS02 FRU 2.4.1.9 GO:0009758 ... Q74K42 21801732
    119309 2yft:A (1.85) BS03 FRU 2.4.1.9 GO:0009758 ... Q74K42 21801732
    119310 2yft:A (1.85) BS04 CA 2.4.1.9 GO:0009758 ... Q74K42 21801732
    119311 2yfu:A (1.65) BS01 CA N/A N/A N/A 21454512
    119312 2yfx:A (1.7) BS01 VGH 2.7.10.1 GO:0004672 ... Q9UM73 24432909 BindingDB: IC50=20nM, Ki=8.2nM, EC50=22840nM, Kd=3.3nM
    119313 2yfy:A (3.1) BS01 9TN 7.2.2.10 GO:0000166 ... P04191 21556058
    119314 2yfz:A (1.8) BS01 BGC N/A N/A N/A 21454512
    119315 2yfz:A (1.8) BS02 GAL N/A N/A N/A 21454512
    119316 2yfz:A (1.8) BS03 BGC N/A N/A N/A 21454512
    119317 2yfz:A (1.8) BS04 CA N/A N/A N/A 21454512
    119318 2yg0:A (1.8) BS01 GLA N/A N/A N/A 21454512
    119319 2yg0:A (1.8) BS02 CA N/A N/A N/A 21454512
    119320 2yg1:A (1.9) BS01 MG 3.2.1.-
    3.2.1.91
    GO:0004553 ... I1SB08 23303184
    119321 2yg1:B (1.9) BS01 MG 3.2.1.-
    3.2.1.91
    GO:0004553 ... I1SB08 23303184
    119322 2yg2:A (1.7) BS01 S1P ? N/A O95445 21606363
    119323 2yg2:B (1.7) BS01 S1P ? N/A O95445 21606363
    119324 2yg3:A (2.0) BS01 FAD 1.4.3.10 GO:0016491 ... B0F9F6 21486042
    119325 2yg3:B (2.0) BS01 FAD 1.4.3.10 GO:0016491 ... B0F9F6 21486042
    119326 2yg4:A (2.3) BS01 FAD 1.4.3.10 GO:0016491 ... B0F9F6 21486042
    119327 2yg4:A (2.3) BS02 4HA 1.4.3.10 GO:0016491 ... B0F9F6 21486042
    119328 2yg4:B (2.3) BS01 4HA 1.4.3.10 GO:0016491 ... B0F9F6 21486042
    119329 2yg4:B (2.3) BS02 FAD 1.4.3.10 GO:0016491 ... B0F9F6 21486042
    119330 2yg5:A (1.9) BS01 FAD 1.4.3.10 GO:0016491 ... B0F9F6 21486042
    119331 2yg6:A (2.5) BS01 FAD 1.4.3.10 GO:0016491 ... B0F9F6 21486042
    119332 2yg6:B (2.5) BS01 FAD 1.4.3.10 GO:0016491 ... B0F9F6 21486042
    119333 2yg7:A (2.75) BS01 FAD 1.4.3.10 GO:0016491 ... B0F9F6 21486042
    119334 2yg7:B (2.75) BS01 FAD 1.4.3.10 GO:0016491 ... B0F9F6 21486042
    119335 2yga:A (2.37) BS01 GDM ? GO:0005524 ... P02829 21778327 MOAD: Kd=24.5uM
    119336 2yge:A (1.956) BS01 GDM ? GO:0005524 ... P02829 21778327 MOAD: Kd=8.62uM
    119337 2ygf:A (2.0) BS01 GDM ? GO:0005524 ... P02829 21778327 MOAD: Kd~10uM
    119338 2ygg:B (2.227) BS01 CA ? GO:0000785 ... P0DP29 21931166
    119339 2ygg:B (2.227) BS02 CA ? GO:0000785 ... P0DP29 21931166
    119340 2ygg:B (2.227) BS03 CA ? GO:0000785 ... P0DP29 21931166
    119341 2ygg:B (2.227) BS04 CA ? GO:0000785 ... P0DP29 21931166
    119342 2ygk:A (2.5) BS01 MN 3.1.-.- GO:0005515 ... Q97WH1 22135300
    119343 2ygk:B (2.5) BS01 MN 3.1.-.- GO:0005515 ... Q97WH1 22135300
    119344 2ygl:A (2.1) BS01 CA ? N/A C1CB04 21767550
    119345 2ygl:B (2.1) BS01 CA ? N/A C1CB04 21767550
    119346 2ygm:A (2.35) BS01 GAL ? N/A C1CB04 21767550
    119347 2ygm:A (2.35) BS02 FUC ? N/A C1CB04 21767550
    119348 2ygm:A (2.35) BS03 GLA ? N/A C1CB04 21767550
    119349 2ygm:A (2.35) BS04 CA ? N/A C1CB04 21767550
    119350 2ygm:B (2.35) BS01 GAL ? N/A C1CB04 21767550
    119351 2ygm:B (2.35) BS02 FUC ? N/A C1CB04 21767550
    119352 2ygm:B (2.35) BS03 GLA ? N/A C1CB04 21767550
    119353 2ygm:B (2.35) BS04 CA ? N/A C1CB04 21767550
    119354 2ygq:A (3.951) BS01 FUC ? N/A Q9Y5W5 21743455
    119355 2ygt:A (2.4) BS01 ZN ? GO:0005576 ... B8QGZ7 23805259
    119356 2ygt:A (2.4) BS02 GOL ? GO:0005576 ... B8QGZ7 23805259
    119357 2ygv:A (2.94) BS01 peptide ? GO:0005634 ... P32447 22323608
    119358 2ygv:A (2.94) BS02 peptide ? GO:0005634 ... P32447 22323608
    119359 2ygv:B (2.94) BS01 peptide ? GO:0005634 ... P32447 22323608
    119360 2ygv:C (2.94) BS01 peptide ? GO:0005634 ... P32447 22323608
    119361 2ygv:D (2.94) BS01 peptide ? GO:0005634 ... P32447 22323608
    119362 2ygv:D (2.94) BS02 peptide ? GO:0005634 ... P32447 22323608
    119363 2ygx:A (2.39) BS01 HEM 1.14.-.- GO:0004497 ... Q59523 22952225
    119364 2ygx:B (2.39) BS01 HEM 1.14.-.- GO:0004497 ... Q59523 22952225
    119365 2ygx:C (2.39) BS01 HEM 1.14.-.- GO:0004497 ... Q59523 22952225
    119366 2ygx:D (2.39) BS01 HEM 1.14.-.- GO:0004497 ... Q59523 22952225
    119367 2yh1:A (-1.00) BS01 rna ? GO:0003676 ... P26368 21753750
    119368 2yhd:A (2.2) BS01 TES ? N/A P10275 21846139 BindingDB: IC50=2.7nM, Ki=3.2nM, EC50=1.1nM
    119369 2yhd:A (2.2) BS02 AV6 ? N/A P10275 21846139 MOAD: Ki=23uM
    BindingDB: IC50=18640nM
    119370 2yhe:A (2.7) BS01 ZN 3.1.6.19 GO:0018741 ... F8KAY7 23061549
    119371 2yhe:A (2.7) BS02 ZN 3.1.6.19 GO:0018741 ... F8KAY7 23061549
    119372 2yhe:A (2.7) BS03 SO4 3.1.6.19 GO:0018741 ... F8KAY7 23061549
    119373 2yhe:B (2.7) BS01 ZN 3.1.6.19 GO:0018741 ... F8KAY7 23061549
    119374 2yhe:B (2.7) BS02 ZN 3.1.6.19 GO:0018741 ... F8KAY7 23061549
    119375 2yhe:B (2.7) BS03 SO4 3.1.6.19 GO:0018741 ... F8KAY7 23061549
    119376 2yhe:C (2.7) BS01 ZN 3.1.6.19 GO:0018741 ... F8KAY7 23061549
    119377 2yhe:C (2.7) BS02 ZN 3.1.6.19 GO:0018741 ... F8KAY7 23061549
    119378 2yhe:C (2.7) BS03 SO4 3.1.6.19 GO:0018741 ... F8KAY7 23061549
    119379 2yhe:D (2.7) BS01 ZN 3.1.6.19 GO:0018741 ... F8KAY7 23061549
    119380 2yhe:D (2.7) BS02 ZN 3.1.6.19 GO:0018741 ... F8KAY7 23061549
    119381 2yhe:D (2.7) BS03 SO4 3.1.6.19 GO:0018741 ... F8KAY7 23061549
    119382 2yhe:E (2.7) BS01 ZN 3.1.6.19 GO:0018741 ... F8KAY7 23061549
    119383 2yhe:E (2.7) BS02 ZN 3.1.6.19 GO:0018741 ... F8KAY7 23061549
    119384 2yhe:E (2.7) BS03 SO4 3.1.6.19 GO:0018741 ... F8KAY7 23061549
    119385 2yhe:F (2.7) BS01 ZN 3.1.6.19 GO:0018741 ... F8KAY7 23061549
    119386 2yhe:F (2.7) BS02 ZN 3.1.6.19 GO:0018741 ... F8KAY7 23061549
    119387 2yhe:F (2.7) BS03 SO4 3.1.6.19 GO:0018741 ... F8KAY7 23061549
    119388 2yhg:A (1.08) BS01 CA ? GO:0016799 ... Q21PD3 21905122
    119389 2yhg:A (1.08) BS02 CA ? GO:0016799 ... Q21PD3 21905122
    119390 2yhg:A (1.08) BS03 MG ? GO:0016799 ... Q21PD3 21905122
    119391 2yhg:A (1.08) BS04 MG ? GO:0016799 ... Q21PD3 21905122
    119392 2yhg:A (1.08) BS05 MG ? GO:0016799 ... Q21PD3 21905122
    119393 2yhg:A (1.08) BS06 ZN ? GO:0016799 ... Q21PD3 21905122
    119394 2yhh:A (-1.00) BS01 MAN ? N/A Q2MDE2 21471192
    119395 2yhh:A (-1.00) BS02 MAN ? N/A Q2MDE2 21471192
    119396 2yhi:A (1.8) BS01 NAP 1.5.1.33 N/A Q581W1 28983525
    119397 2yhi:A (1.8) BS02 W16 1.5.1.33 N/A Q581W1 28983525
    119398 2yhi:B (1.8) BS01 NAP 1.5.1.33 N/A Q581W1 28983525
    119399 2yhi:B (1.8) BS02 W16 1.5.1.33 N/A Q581W1 28983525
    119400 2yhi:C (1.8) BS01 NAP 1.5.1.33 N/A Q581W1 28983525

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).