SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 592 593 594 595 596 597 598 599 600 601 602 603 604 605 606 607 608 609 610 611 612 > >>
    Go to page

    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    120201 2yrs:K (2.3) BS01 HEM ? GO:0004601 ... P68871 N/A
    120202 2yrs:M (2.3) BS01 HEM ? GO:0004601 ... P69905 N/A
    120203 2yrs:O (2.3) BS01 HEM ? GO:0004601 ... P68871 N/A
    120204 2yrt:A (-1.00) BS01 ZN ? N/A Q9UHD1 N/A
    120205 2yrt:A (-1.00) BS02 ZN ? N/A Q9UHD1 N/A
    120206 2yrx:A (1.9) BS01 PO4 6.3.4.13 GO:0000166 ... Q5L3C7 20716513
    120207 2yrx:A (1.9) BS02 AMP 6.3.4.13 GO:0000166 ... Q5L3C7 20716513
    120208 2ys2:A (-1.00) BS01 ZN 2.7.10.2 GO:0035556 ... P51813 N/A
    120209 2ys5:A (-1.00) BS01 peptide ? N/A O43559 20454865
    120210 2ys6:A (2.21) BS01 GLY 6.3.4.13 GO:0000166 ... Q5L3C7 20716513
    120211 2ys6:A (2.21) BS02 AMP 6.3.4.13 GO:0000166 ... Q5L3C7 20716513
    120212 2ysa:A (-1.00) BS01 ZN 2.3.2.27 GO:0003676 ... Q7Z6E9 N/A
    120213 2ysj:A (-1.00) BS01 ZN 2.3.2.27 N/A Q9BZY9 N/A
    120214 2ysj:A (-1.00) BS02 ZN 2.3.2.27 N/A Q9BZY9 N/A
    120215 2ysl:A (-1.00) BS01 ZN 2.3.2.27 N/A Q9BZY9 N/A
    120216 2ysl:A (-1.00) BS02 ZN 2.3.2.27 N/A Q9BZY9 N/A
    120217 2ysm:A (-1.00) BS01 ZN 2.1.1.364 N/A Q8NEZ4 N/A
    120218 2ysm:A (-1.00) BS02 ZN 2.1.1.364 N/A Q8NEZ4 N/A
    120219 2ysm:A (-1.00) BS03 ZN 2.1.1.364 N/A Q8NEZ4 N/A
    120220 2ysm:A (-1.00) BS04 ZN 2.1.1.364 N/A Q8NEZ4 N/A
    120221 2yso:A (-1.00) BS01 ZN ? N/A Q9Y2L8 N/A
    120222 2ysp:A (-1.00) BS01 ZN ? N/A Q9NZL3 N/A
    120223 2ysv:A (-1.00) BS01 ZN ? N/A Q8WTR7 N/A
    120224 2yt5:A (-1.00) BS01 ZN ? N/A Q02395 N/A
    120225 2yt5:A (-1.00) BS02 ZN ? N/A Q02395 N/A
    120226 2yt9:A (-1.00) BS01 ZN ? N/A Q9HBE1 N/A
    120227 2yt9:A (-1.00) BS02 ZN ? N/A Q9HBE1 N/A
    120228 2yt9:A (-1.00) BS03 ZN ? N/A Q9HBE1 N/A
    120229 2yta:A (-1.00) BS01 ZN ? N/A P17041 N/A
    120230 2ytb:A (-1.00) BS01 ZN ? N/A P17041 N/A
    120231 2ytd:A (-1.00) BS01 ZN ? N/A Q8WTR7 N/A
    120232 2yte:A (-1.00) BS01 ZN ? N/A Q8WTR7 N/A
    120233 2ytf:A (-1.00) BS01 ZN ? N/A Q14587 N/A
    120234 2ytg:A (-1.00) BS01 ZN ? N/A Q9Y2L8 N/A
    120235 2yth:A (-1.00) BS01 ZN ? N/A Q9NZL3 N/A
    120236 2yti:A (-1.00) BS01 ZN ? N/A Q96SE7 N/A
    120237 2ytj:A (-1.00) BS01 ZN ? N/A Q5JVG2 N/A
    120238 2ytk:A (-1.00) BS01 ZN ? N/A Q96SE7 N/A
    120239 2ytm:A (-1.00) BS01 ZN ? N/A Q8NHY6 N/A
    120240 2ytn:A (-1.00) BS01 ZN ? N/A Q96SE7 N/A
    120241 2yto:A (-1.00) BS01 ZN ? N/A Q5JVG2 N/A
    120242 2ytp:A (-1.00) BS01 ZN ? N/A Q5JVG2 N/A
    120243 2ytq:A (-1.00) BS01 ZN ? N/A Q14587 N/A
    120244 2ytr:A (-1.00) BS01 ZN ? N/A Q96SE7 N/A
    120245 2yts:A (-1.00) BS01 ZN ? N/A Q5JVG2 N/A
    120246 2ytt:A (-1.00) BS01 ZN ? N/A Q8WTR7 N/A
    120247 2ytz:A (2.65) BS01 SAH 2.1.1.216 GO:0002940 ... O59493 18789948
    120248 2ytz:B (2.65) BS01 SAH 2.1.1.216 GO:0002940 ... O59493 18789948
    120249 2yu1:A (2.7) BS01 FE2 1.14.11.27 N/A Q9Y2K7 N/A
    120250 2yu1:A (2.7) BS02 AKG 1.14.11.27 N/A Q9Y2K7 N/A
    120251 2yu2:A (2.7) BS01 FE2 1.14.11.27 N/A Q9Y2K7 N/A
    120252 2yu4:A (-1.00) BS01 ZN 2.3.2.- GO:0000724 ... Q96MF7 N/A
    120253 2yu5:A (-1.00) BS01 ZN ? N/A Q8WTR7 N/A
    120254 2yu7:A (-1.00) BS01 peptide 3.1.3.48 N/A P29350 N/A
    120255 2yu8:A (-1.00) BS01 ZN ? N/A Q96SE7 N/A
    120256 2yu9:A (3.4) BS01 rna 2.7.7.6 GO:0001172 ... P04050 17129781
    120257 2yu9:A (3.4) BS02 dna 2.7.7.6 GO:0001172 ... P04050 17129781
    120258 2yu9:A (3.4) BS03 ZN 2.7.7.6 GO:0001172 ... P04050 17129781
    120259 2yu9:A (3.4) BS04 ZN 2.7.7.6 GO:0001172 ... P04050 17129781
    120260 2yu9:A (3.4) BS05 MG 2.7.7.6 GO:0001172 ... P04050 17129781
    120261 2yu9:B (3.4) BS01 rna 2.7.7.6 GO:0001172 ... P08518 17129781
    120262 2yu9:B (3.4) BS02 dna 2.7.7.6 GO:0001172 ... P08518 17129781
    120263 2yu9:B (3.4) BS03 UTP 2.7.7.6 GO:0001172 ... P08518 17129781
    120264 2yu9:B (3.4) BS04 ZN 2.7.7.6 GO:0001172 ... P08518 17129781
    120265 2yu9:C (3.4) BS01 ZN 2.7.7.6 GO:0000428 ... P16370 17129781
    120266 2yu9:I (3.4) BS01 ZN 2.7.7.6 GO:0001172 ... P27999 17129781
    120267 2yu9:I (3.4) BS02 ZN 2.7.7.6 GO:0001172 ... P27999 17129781
    120268 2yu9:J (3.4) BS01 ZN 2.7.7.6 GO:0001172 ... P22139 17129781
    120269 2yu9:L (3.4) BS01 ZN 2.7.7.6 GO:0001172 ... P40422 17129781
    120270 2yuc:A (-1.00) BS01 ZN 2.3.2.27 GO:0008270 ... Q9BUZ4 N/A
    120271 2yuc:A (-1.00) BS02 ZN 2.3.2.27 GO:0008270 ... Q9BUZ4 N/A
    120272 2yur:A (-1.00) BS01 ZN 2.3.2.27 GO:0006397 ... Q7Z6E9 N/A
    120273 2yur:A (-1.00) BS02 ZN 2.3.2.27 GO:0006397 ... Q7Z6E9 N/A
    120274 2yut:A (2.2) BS01 NAP ? GO:0016020 ... Q53W68 N/A
    120275 2yuu:A (-1.00) BS01 ZN 2.7.10.2
    2.7.11.13
    N/A Q05655 N/A
    120276 2yuu:A (-1.00) BS02 ZN 2.7.10.2
    2.7.11.13
    N/A Q05655 N/A
    120277 2yv5:A (1.9) BS01 ZN 3.6.1.- GO:0000028 ... O66555 N/A
    120278 2yv5:A (1.9) BS02 GDP 3.6.1.- GO:0000028 ... O66555 N/A
    120279 2yv7:A (1.7) BS01 CA ? GO:0004602 ... Q9VY78 17985355
    120280 2yv9:A (1.6) BS01 CA ? GO:0002064 ... Q8WQA4 17985355
    120281 2yv9:B (1.6) BS01 CA ? GO:0002064 ... Q8WQA4 17985355
    120282 2yvc:A (3.2) BS01 peptide ? GO:0003779 ... P26043 17459884
    120283 2yvc:A (3.2) BS02 peptide ? GO:0003779 ... P26043 17459884
    120284 2yvc:B (3.2) BS01 peptide ? GO:0003779 ... P26043 17459884
    120285 2yvc:B (3.2) BS02 peptide ? GO:0003779 ... P26043 17459884
    120286 2yvc:C (3.2) BS01 peptide ? GO:0003779 ... P26043 17459884
    120287 2yve:A (1.4) BS01 MBT ? GO:0003677 ... Q8NMG3 20691702
    120288 2yve:B (1.4) BS01 MBT ? GO:0003677 ... Q8NMG3 20691702
    120289 2yvf:A (1.6) BS01 FAD 1.18.1.2 GO:0005737 ... Q52437 17850818
    120290 2yvf:A (1.6) BS02 NAD 1.18.1.2 GO:0005737 ... Q52437 17850818
    120291 2yvg:A (1.6) BS01 FAD 1.18.1.2 GO:0005737 ... Q52437 17850818
    120292 2yvg:A (1.6) BS02 NAD 1.18.1.2 GO:0005737 ... Q52437 17850818
    120293 2yvh:A (2.5) BS01 dna ? GO:0003677 ... Q8NMG3 20691702
    120294 2yvh:A (2.5) BS02 dna ? GO:0003677 ... Q8NMG3 20691702
    120295 2yvh:B (2.5) BS01 dna ? GO:0003677 ... Q8NMG3 20691702
    120296 2yvh:B (2.5) BS02 dna ? GO:0003677 ... Q8NMG3 20691702
    120297 2yvh:C (2.5) BS01 dna ? GO:0003677 ... Q8NMG3 20691702
    120298 2yvh:C (2.5) BS02 dna ? GO:0003677 ... Q8NMG3 20691702
    120299 2yvh:D (2.5) BS01 dna ? GO:0003677 ... Q8NMG3 20691702
    120300 2yvh:D (2.5) BS02 dna ? GO:0003677 ... Q8NMG3 20691702
    120301 2yvj:A (1.9) BS01 FAD 1.18.1.2 GO:0005737 ... Q52437 17850818
    120302 2yvj:A (1.9) BS02 NAI 1.18.1.2 GO:0005737 ... Q52437 17850818
    120303 2yvj:B (1.9) BS01 FES ? GO:0051537 ... Q52440 17850818
    120304 2yvj:P (1.9) BS01 FAD 1.18.1.2 GO:0005737 ... Q52437 17850818
    120305 2yvj:P (1.9) BS02 NAI 1.18.1.2 GO:0005737 ... Q52437 17850818
    120306 2yvk:A (2.4) BS01 MRU 5.3.1.23 GO:0046523 ... O31662 18156470
    120307 2yvk:B (2.4) BS01 MRU 5.3.1.23 GO:0046523 ... O31662 18156470
    120308 2yvk:C (2.4) BS01 MRU 5.3.1.23 GO:0046523 ... O31662 18156470
    120309 2yvk:D (2.4) BS01 MRU 5.3.1.23 GO:0046523 ... O31662 18156470
    120310 2yvl:A (2.2) BS01 SAM 2.1.1.220 GO:0030488 ... O66653 24894648
    120311 2yvl:B (2.2) BS01 SAM 2.1.1.220 GO:0030488 ... O66653 24894648
    120312 2yvl:C (2.2) BS01 SAM 2.1.1.220 GO:0030488 ... O66653 24894648
    120313 2yvl:D (2.2) BS01 SAM 2.1.1.220 GO:0030488 ... O66653 24894648
    120314 2yvm:A (1.7) BS01 MG 3.6.1.- GO:0005829 ... Q5SJY9 18039767
    120315 2yvm:A (1.7) BS02 MG 3.6.1.- GO:0005829 ... Q5SJY9 18039767
    120316 2yvo:A (1.67) BS01 MG 3.6.1.- GO:0005829 ... Q5SJY9 18039767
    120317 2yvo:A (1.67) BS02 MG 3.6.1.- GO:0005829 ... Q5SJY9 18039767
    120318 2yvo:A (1.67) BS03 AMP 3.6.1.- GO:0005829 ... Q5SJY9 18039767
    120319 2yvp:A (1.66) BS01 MG 3.6.1.- GO:0005829 ... Q5SJY9 18039767
    120320 2yvp:A (1.66) BS02 MG 3.6.1.- GO:0005829 ... Q5SJY9 18039767
    120321 2yvp:A (1.66) BS03 RBY 3.6.1.- GO:0005829 ... Q5SJY9 18039767
    120322 2yvr:A (1.8) BS01 ZN 2.3.2.27 GO:0008270 ... Q13263 N/A
    120323 2yvr:A (1.8) BS02 ZN 2.3.2.27 GO:0008270 ... Q13263 N/A
    120324 2yvr:B (1.8) BS01 ZN 2.3.2.27 GO:0008270 ... Q13263 N/A
    120325 2yvr:B (1.8) BS02 ZN 2.3.2.27 GO:0008270 ... Q13263 N/A
    120326 2yvv:A (2.6) BS01 GAL 4.2.2.1 GO:0004415 ... Q9A0M7 N/A
    120327 2yvv:A (2.6) BS02 GLC 4.2.2.1 GO:0004415 ... Q9A0M7 N/A
    120328 2yvw:A (1.81) BS01 EPU 2.5.1.7 GO:0003824 ... O67315 N/A
    120329 2yvx:A (3.5) BS01 MG ? GO:0000287 ... Q5SMG8 17700703
    120330 2yvx:A (3.5) BS02 MG ? GO:0000287 ... Q5SMG8 17700703
    120331 2yvx:A (3.5) BS03 MG ? GO:0000287 ... Q5SMG8 17700703
    120332 2yvx:B (3.5) BS01 MG ? GO:0000287 ... Q5SMG8 17700703
    120333 2yvx:B (3.5) BS02 MG ? GO:0000287 ... Q5SMG8 17700703
    120334 2yvx:B (3.5) BS03 MG ? GO:0000287 ... Q5SMG8 17700703
    120335 2yvx:C (3.5) BS01 MG ? GO:0000287 ... Q5SMG8 17700703
    120336 2yvx:C (3.5) BS02 MG ? GO:0000287 ... Q5SMG8 17700703
    120337 2yvx:C (3.5) BS03 MG ? GO:0000287 ... Q5SMG8 17700703
    120338 2yvx:D (3.5) BS01 MG ? GO:0000287 ... Q5SMG8 17700703
    120339 2yvx:D (3.5) BS02 MG ? GO:0000287 ... Q5SMG8 17700703
    120340 2yvy:A (2.3) BS01 MG ? GO:0015095 ... Q5SMG8 17700703
    120341 2yvy:A (2.3) BS02 MG ? GO:0015095 ... Q5SMG8 17700703
    120342 2yw2:A (1.8) BS01 PO4 6.3.4.13 GO:0004637 ... O66949 20716513
    120343 2yw2:A (1.8) BS02 ATP 6.3.4.13 GO:0004637 ... O66949 20716513
    120344 2yw2:B (1.8) BS01 PO4 6.3.4.13 GO:0004637 ... O66949 20716513
    120345 2yw2:B (1.8) BS02 ATP 6.3.4.13 GO:0004637 ... O66949 20716513
    120346 2yw8:A (3.0) BS01 ZN ? GO:0046872 ... Q96T51 N/A
    120347 2yw8:A (3.0) BS02 ZN ? GO:0046872 ... Q96T51 N/A
    120348 2yw9:D (2.5) BS01 NAP 1.3.1.9 GO:0004318 ... Q5SLI9 N/A
    120349 2yw9:H (2.5) BS01 NAP 1.3.1.9 GO:0004318 ... Q5SLI9 N/A
    120350 2ywc:A (2.2) BS01 XMP 6.3.5.2 GO:0003921 ... Q5SI28 N/A
    120351 2ywc:B (2.2) BS01 XMP 6.3.5.2 GO:0003921 ... Q5SI28 N/A
    120352 2ywc:C (2.2) BS01 XMP 6.3.5.2 GO:0003921 ... Q5SI28 N/A
    120353 2ywc:D (2.2) BS01 XMP 6.3.5.2 GO:0003921 ... Q5SI28 N/A
    120354 2ywf:A (2.24) BS01 GNP 3.6.5.n1 GO:0003746 ... O67618 N/A
    120355 2ywg:A (2.94) BS01 GTP 3.6.5.n1 GO:0003746 ... O67618 N/A
    120356 2ywh:A (2.24) BS01 GDP 3.6.5.n1 GO:0003746 ... O67618 N/A
    120357 2ywl:A (1.6) BS01 FAD ? GO:0016491 ... Q5SLC3 N/A
    120358 2ywl:A (1.6) BS02 FAD ? GO:0016491 ... Q5SLC3 N/A
    120359 2ywl:B (1.6) BS01 FAD ? GO:0016491 ... Q5SLC3 N/A
    120360 2ywl:B (1.6) BS02 FAD ? GO:0016491 ... Q5SLC3 N/A
    120361 2ywp:A (2.9) BS01 A42 2.7.11.1 GO:0000077 ... O14757 16446090 BindingDB: IC50=7nM
    120362 2ywr:A (1.77) BS01 CO 2.1.2.2 GO:0004644 ... O67023 24108189
    120363 2ywr:A (1.77) BS02 CO 2.1.2.2 GO:0004644 ... O67023 24108189
    120364 2ywr:A (1.77) BS03 CO 2.1.2.2 GO:0004644 ... O67023 24108189
    120365 2ywv:A (1.75) BS01 ADP 6.3.2.6 GO:0004639 ... Q5L3D5 N/A
    120366 2ywv:B (1.75) BS01 ADP 6.3.2.6 GO:0004639 ... Q5L3D5 N/A
    120367 2yww:A (2.0) BS01 ZN ? GO:0006207 ... Q58801 N/A
    120368 2yww:A (2.0) BS02 ATP ? GO:0006207 ... Q58801 N/A
    120369 2yww:A (2.0) BS03 ATP ? GO:0006207 ... Q58801 N/A
    120370 2yww:A (2.0) BS04 ATP ? GO:0006207 ... Q58801 N/A
    120371 2yww:B (2.0) BS01 ATP ? GO:0006207 ... Q58801 N/A
    120372 2yww:B (2.0) BS02 ZN ? GO:0006207 ... Q58801 N/A
    120373 2yww:B (2.0) BS03 ATP ? GO:0006207 ... Q58801 N/A
    120374 2yww:B (2.0) BS04 ATP ? GO:0006207 ... Q58801 N/A
    120375 2yx1:A (2.2) BS01 ZN 2.1.1.228 GO:0002939 ... Q58293 18384044
    120376 2yx1:A (2.2) BS02 ZN 2.1.1.228 GO:0002939 ... Q58293 18384044
    120377 2yx1:A (2.2) BS03 SFG 2.1.1.228 GO:0002939 ... Q58293 18384044
    120378 2yx1:B (2.2) BS01 ZN 2.1.1.228 GO:0002939 ... Q58293 18384044
    120379 2yx1:B (2.2) BS02 ZN 2.1.1.228 GO:0002939 ... Q58293 18384044
    120380 2yx1:B (2.2) BS03 ZN 2.1.1.228 GO:0002939 ... Q58293 18384044
    120381 2yx1:B (2.2) BS04 SFG 2.1.1.228 GO:0002939 ... Q58293 18384044
    120382 2yx4:A (2.0) BS01 GLN ? GO:0005829 ... F9VNT4 18653535
    120383 2yx6:B (2.0) BS01 ADP ? N/A O58552 N/A
    120384 2yx6:C (2.0) BS01 ADP ? N/A O58552 N/A
    120385 2yx7:A (2.05) BS01 GLN ? GO:0005829 ... F9VNT4 18653535
    120386 2yx9:A (1.68) BS01 CU 1.4.3.21 GO:0005507 ... P46881 17715921
    120387 2yx9:B (1.68) BS01 CU 1.4.3.21 GO:0005507 ... P46881 17715921
    120388 2yxc:A (1.5) BS01 HEM ? GO:0009055 ... P00132 18702516
    120389 2yxc:A (1.5) BS02 HEM ? GO:0009055 ... P00132 18702516
    120390 2yxc:A (1.5) BS03 HEM ? GO:0009055 ... P00132 18702516
    120391 2yxc:A (1.5) BS04 HEM ? GO:0009055 ... P00132 18702516
    120392 2yxh:A (2.0) BS01 MG ? GO:0006203 ... Q9WYJ5 N/A
    120393 2yxh:A (2.0) BS02 MG ? GO:0006203 ... Q9WYJ5 N/A
    120394 2yxh:B (2.0) BS01 MG ? GO:0006203 ... Q9WYJ5 N/A
    120395 2yxh:B (2.0) BS02 MG ? GO:0006203 ... Q9WYJ5 N/A
    120396 2yxj:A (2.2) BS01 N3C ? GO:0042981 ... Q07817 17572662 MOAD: ic50=9nM
    BindingDB: Ki=<1.000000nM, IC50=6nM, Kd=0.37nM, EC50=30nM
    120397 2yxj:B (2.2) BS01 N3C ? GO:0042981 ... Q07817 17572662 MOAD: ic50=9nM
    BindingDB: Ki=<1.000000nM, IC50=6nM, Kd=0.37nM, EC50=30nM
    120398 2yxl:A (2.55) BS01 SFG ? GO:0001510 ... O58581 21123870
    120399 2yxn:A (1.8) BS01 AZY 6.1.1.1 GO:0000166 ... P0AGJ9 20159998
    120400 2yxo:A (1.6) BS01 SO4 3.1.3.15 GO:0000105 ... Q5SLG2 17929834

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).