SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    125401 3aef:B (2.8) BS01 FES 1.3.5.1 GO:0005515 ... Q007T0 N/A
    125402 3aef:B (2.8) BS02 SF4 1.3.5.1 GO:0005515 ... Q007T0 N/A
    125403 3aef:B (2.8) BS03 F3S 1.3.5.1 GO:0005515 ... Q007T0 N/A
    125404 3aef:C (2.8) BS01 HEM ? GO:0006099 ... D0VWV4 N/A
    125405 3aef:D (2.8) BS01 HEM ? GO:0005740 ... A5GZW8 N/A
    125406 3aef:D (2.8) BS02 EPH ? GO:0005740 ... A5GZW8 N/A
    125407 3aeg:A (3.27) BS01 FAD 1.3.5.1 GO:0005515 ... Q0QF01 N/A
    125408 3aeg:B (3.27) BS01 FES 1.3.5.1 GO:0005515 ... Q007T0 N/A
    125409 3aeg:B (3.27) BS02 SF4 1.3.5.1 GO:0005515 ... Q007T0 N/A
    125410 3aeg:B (3.27) BS03 F3S 1.3.5.1 GO:0005515 ... Q007T0 N/A
    125411 3aeg:B (3.27) BS04 11J 1.3.5.1 GO:0005515 ... Q007T0 N/A
    125412 3aeg:C (3.27) BS01 HEM ? GO:0006099 ... D0VWV4 N/A
    125413 3aeg:C (3.27) BS02 11J ? GO:0006099 ... D0VWV4 N/A
    125414 3aeg:D (3.27) BS01 HEM ? GO:0005740 ... A5GZW8 N/A
    125415 3aej:A (2.59) BS01 AA5 4.4.1.11 GO:0003824 ... Q86D28 N/A
    125416 3aej:A (2.59) BS02 AA5 4.4.1.11 GO:0003824 ... Q86D28 N/A
    125417 3aej:B (2.59) BS01 AA5 4.4.1.11 GO:0003824 ... Q86D28 N/A
    125418 3aej:C (2.59) BS01 AA5 4.4.1.11 GO:0003824 ... Q86D28 N/A
    125419 3aej:C (2.59) BS02 MET 4.4.1.11 GO:0003824 ... Q86D28 N/A
    125420 3aej:D (2.59) BS01 AA5 4.4.1.11 GO:0003824 ... Q86D28 N/A
    125421 3aej:D (2.59) BS02 AA5 4.4.1.11 GO:0003824 ... Q86D28 N/A
    125422 3aek:A (2.3) BS01 SF4 1.3.7.7 GO:0005515 ... P26164 20400946
    125423 3aek:A (2.3) BS02 PMR 1.3.7.7 GO:0005515 ... P26164 20400946
    125424 3aek:B (2.3) BS01 SF4 1.3.7.7 GO:0005515 ... P26163 20400946
    125425 3aek:B (2.3) BS02 PMR 1.3.7.7 GO:0005515 ... P26163 20400946
    125426 3aek:B (2.3) BS03 PMR 1.3.7.7 GO:0005515 ... P26163 20400946
    125427 3aek:C (2.3) BS01 PMR 1.3.7.7 GO:0005515 ... P26164 20400946
    125428 3aek:C (2.3) BS02 SF4 1.3.7.7 GO:0005515 ... P26164 20400946
    125429 3aek:D (2.3) BS01 PMR 1.3.7.7 GO:0005515 ... P26163 20400946
    125430 3aek:D (2.3) BS02 SF4 1.3.7.7 GO:0005515 ... P26163 20400946
    125431 3aek:D (2.3) BS03 PMR 1.3.7.7 GO:0005515 ... P26163 20400946
    125432 3ael:A (2.0) BS01 4LM 4.4.1.11 GO:0003824 ... Q86D28 N/A
    125433 3ael:A (2.0) BS02 2LM 4.4.1.11 GO:0003824 ... Q86D28 N/A
    125434 3ael:B (2.0) BS01 2LM 4.4.1.11 GO:0003824 ... Q86D28 N/A
    125435 3ael:B (2.0) BS02 2LM 4.4.1.11 GO:0003824 ... Q86D28 N/A
    125436 3ael:C (2.0) BS01 2LM 4.4.1.11 GO:0003824 ... Q86D28 N/A
    125437 3ael:C (2.0) BS02 2LM 4.4.1.11 GO:0003824 ... Q86D28 N/A
    125438 3ael:D (2.0) BS01 4LM 4.4.1.11 GO:0003824 ... Q86D28 N/A
    125439 3ael:D (2.0) BS02 2LM 4.4.1.11 GO:0003824 ... Q86D28 N/A
    125440 3aem:A (2.2) BS01 2LM 4.4.1.11 GO:0003824 ... Q86D28 N/A
    125441 3aem:A (2.2) BS02 2LM 4.4.1.11 GO:0003824 ... Q86D28 N/A
    125442 3aem:B (2.2) BS01 2LM 4.4.1.11 GO:0003824 ... Q86D28 N/A
    125443 3aem:C (2.2) BS01 2LM 4.4.1.11 GO:0003824 ... Q86D28 N/A
    125444 3aem:C (2.2) BS02 MET 4.4.1.11 GO:0003824 ... Q86D28 N/A
    125445 3aem:D (2.2) BS01 2LM 4.4.1.11 GO:0003824 ... Q86D28 N/A
    125446 3aem:D (2.2) BS02 2LM 4.4.1.11 GO:0003824 ... Q86D28 N/A
    125447 3aen:A (2.0) BS01 MET 4.4.1.11 GO:0003824 ... Q86D28 N/A
    125448 3aen:A (2.0) BS02 4LM 4.4.1.11 GO:0003824 ... Q86D28 N/A
    125449 3aen:B (2.0) BS01 4LM 4.4.1.11 GO:0003824 ... Q86D28 N/A
    125450 3aen:C (2.0) BS01 4LM 4.4.1.11 GO:0003824 ... Q86D28 N/A
    125451 3aen:D (2.0) BS01 MET 4.4.1.11 GO:0003824 ... Q86D28 N/A
    125452 3aen:D (2.0) BS02 4LM 4.4.1.11 GO:0003824 ... Q86D28 N/A
    125453 3aeo:A (2.15) BS01 3LM 4.4.1.11 GO:0003824 ... Q86D28 N/A
    125454 3aeo:A (2.15) BS02 3LM 4.4.1.11 GO:0003824 ... Q86D28 N/A
    125455 3aeo:B (2.15) BS01 3LM 4.4.1.11 GO:0003824 ... Q86D28 N/A
    125456 3aeo:B (2.15) BS02 3LM 4.4.1.11 GO:0003824 ... Q86D28 N/A
    125457 3aeo:C (2.15) BS01 3LM 4.4.1.11 GO:0003824 ... Q86D28 N/A
    125458 3aeo:C (2.15) BS02 3LM 4.4.1.11 GO:0003824 ... Q86D28 N/A
    125459 3aeo:D (2.15) BS01 3LM 4.4.1.11 GO:0003824 ... Q86D28 N/A
    125460 3aeo:D (2.15) BS02 3LM 4.4.1.11 GO:0003824 ... Q86D28 N/A
    125461 3aep:A (2.28) BS01 4LM 4.4.1.11 GO:0003824 ... Q86D28 N/A
    125462 3aep:A (2.28) BS02 4LM 4.4.1.11 GO:0003824 ... Q86D28 N/A
    125463 3aep:B (2.28) BS01 4LM 4.4.1.11 GO:0003824 ... Q86D28 N/A
    125464 3aep:B (2.28) BS02 4LM 4.4.1.11 GO:0003824 ... Q86D28 N/A
    125465 3aep:C (2.28) BS01 4LM 4.4.1.11 GO:0003824 ... Q86D28 N/A
    125466 3aep:C (2.28) BS02 4LM 4.4.1.11 GO:0003824 ... Q86D28 N/A
    125467 3aep:D (2.28) BS01 4LM 4.4.1.11 GO:0003824 ... Q86D28 N/A
    125468 3aep:D (2.28) BS02 4LM 4.4.1.11 GO:0003824 ... Q86D28 N/A
    125469 3aeq:A (2.9) BS01 SF4 1.3.7.7 GO:0005515 ... P26164 20400946
    125470 3aeq:A (2.9) BS02 PMR 1.3.7.7 GO:0005515 ... P26164 20400946
    125471 3aeq:B (2.9) BS01 SF4 1.3.7.7 GO:0005515 ... P26163 20400946
    125472 3aeq:B (2.9) BS02 PMR 1.3.7.7 GO:0005515 ... P26163 20400946
    125473 3aeq:B (2.9) BS03 PMR 1.3.7.7 GO:0005515 ... P26163 20400946
    125474 3aeq:C (2.9) BS01 PMR 1.3.7.7 GO:0005515 ... P26164 20400946
    125475 3aeq:C (2.9) BS02 SF4 1.3.7.7 GO:0005515 ... P26164 20400946
    125476 3aeq:D (2.9) BS01 PMR 1.3.7.7 GO:0005515 ... P26163 20400946
    125477 3aeq:D (2.9) BS02 SF4 1.3.7.7 GO:0005515 ... P26163 20400946
    125478 3aeq:D (2.9) BS03 PMR 1.3.7.7 GO:0005515 ... P26163 20400946
    125479 3aer:A (2.8) BS01 SF4 1.3.7.7 GO:0005515 ... P26164 20400946
    125480 3aer:B (2.8) BS01 SF4 1.3.7.7 GO:0005515 ... P26163 20400946
    125481 3aer:C (2.8) BS01 SF4 1.3.7.7 GO:0005515 ... P26164 20400946
    125482 3aer:D (2.8) BS01 SF4 1.3.7.7 GO:0005515 ... P26163 20400946
    125483 3aes:A (2.5) BS01 SF4 1.3.7.7 GO:0005515 ... P26164 20400946
    125484 3aes:B (2.5) BS01 SF4 1.3.7.7 GO:0005515 ... P26163 20400946
    125485 3aes:C (2.5) BS01 SF4 1.3.7.7 GO:0005515 ... P26164 20400946
    125486 3aes:D (2.5) BS01 SF4 1.3.7.7 GO:0005515 ... P26163 20400946
    125487 3aet:A (2.91) BS01 SF4 1.3.7.7 GO:0005515 ... P26164 20400946
    125488 3aet:B (2.91) BS01 SF4 1.3.7.7 GO:0005515 ... P26163 20400946
    125489 3aet:C (2.91) BS01 SF4 1.3.7.7 GO:0005515 ... P26164 20400946
    125490 3aet:D (2.91) BS01 SF4 1.3.7.7 GO:0005515 ... P26163 20400946
    125491 3aeu:A (2.9) BS01 SF4 1.3.7.7 GO:0005515 ... P26164 20400946
    125492 3aeu:C (2.9) BS01 SF4 1.3.7.7 GO:0005515 ... P26164 20400946
    125493 3aeu:D (2.9) BS01 SF4 1.3.7.7 GO:0005515 ... P26163 20400946
    125494 3aev:B (2.8) BS01 rna ? GO:0003676 ... O59282 20363226
    125495 3aex:A (2.1) BS01 AN7 4.2.3.1 GO:0003941 ... Q5SL02 21084312
    125496 3aex:A (2.1) BS02 PO4 4.2.3.1 GO:0003941 ... Q5SL02 21084312
    125497 3aex:B (2.1) BS01 AN7 4.2.3.1 GO:0003941 ... Q5SL02 21084312
    125498 3aex:B (2.1) BS02 PO4 4.2.3.1 GO:0003941 ... Q5SL02 21084312
    125499 3aey:A (1.92) BS01 SO4 4.2.3.1 GO:0003941 ... Q5SL02 21084312
    125500 3aey:A (1.92) BS02 SO4 4.2.3.1 GO:0003941 ... Q5SL02 21084312
    125501 3aey:A (1.92) BS03 SO4 4.2.3.1 GO:0003941 ... Q5SL02 21084312
    125502 3aey:B (1.92) BS01 SO4 4.2.3.1 GO:0003941 ... Q5SL02 21084312
    125503 3aey:B (1.92) BS02 SO4 4.2.3.1 GO:0003941 ... Q5SL02 21084312
    125504 3aey:B (1.92) BS03 SO4 4.2.3.1 GO:0003941 ... Q5SL02 21084312
    125505 3aez:A (2.2) BS01 GDP 2.7.1.33 GO:0004594 ... P9WPA7 20451532
    125506 3aez:A (2.2) BS02 PAZ 2.7.1.33 GO:0004594 ... P9WPA7 20451532
    125507 3af0:A (2.5) BS01 GDP 2.7.1.33 GO:0004594 ... P9WPA7 20451532
    125508 3af0:A (2.5) BS02 PAU 2.7.1.33 GO:0004594 ... P9WPA7 20451532
    125509 3af1:A (2.5) BS01 GDP 2.7.1.33 GO:0004594 ... P9WPA7 20451532
    125510 3af2:A (2.3) BS01 ACP 2.7.1.33 GO:0004594 ... P9WPA7 20451532
    125511 3af3:A (2.35) BS01 PAU 2.7.1.33 GO:0004594 ... P9WPA7 20451532
    125512 3af5:A (2.6) BS01 ZN 3.1.-.- GO:0003676 ... O50112 20544974
    125513 3af5:A (2.6) BS02 ZN 3.1.-.- GO:0003676 ... O50112 20544974
    125514 3af5:A (2.6) BS03 ZN 3.1.-.- GO:0003676 ... O50112 20544974
    125515 3af5:A (2.6) BS04 ZN 3.1.-.- GO:0003676 ... O50112 20544974
    125516 3af6:A (2.6) BS01 rna 3.1.-.- GO:0003676 ... O50112 20544974
    125517 3af6:A (2.6) BS02 rna 3.1.-.- GO:0003676 ... O50112 20544974
    125518 3af6:A (2.6) BS03 ZN 3.1.-.- GO:0003676 ... O50112 20544974
    125519 3af6:A (2.6) BS04 ZN 3.1.-.- GO:0003676 ... O50112 20544974
    125520 3af7:X (1.58) BS01 PD ? GO:0005506 ... P02791 20586408
    125521 3af7:X (1.58) BS02 PLL ? GO:0005506 ... P02791 20586408
    125522 3af7:X (1.58) BS03 PLL ? GO:0005506 ... P02791 20586408
    125523 3af7:X (1.58) BS04 PLL ? GO:0005506 ... P02791 20586408
    125524 3af8:X (1.66) BS01 PLL ? GO:0005506 ... P02791 20586408
    125525 3af8:X (1.66) BS02 PLL ? GO:0005506 ... P02791 20586408
    125526 3af9:X (1.85) BS01 PLL ? GO:0005506 ... P02791 20586408
    125527 3afa:A (2.5) BS01 dna ? GO:0000786 ... P68431 20498094
    125528 3afa:A (2.5) BS02 dna ? GO:0000786 ... P68431 20498094
    125529 3afa:B (2.5) BS01 dna ? GO:0000781 ... P62805 20498094
    125530 3afa:B (2.5) BS02 dna ? GO:0000781 ... P62805 20498094
    125531 3afa:C (2.5) BS01 dna ? GO:0000786 ... P04908 20498094
    125532 3afa:C (2.5) BS02 dna ? GO:0000786 ... P04908 20498094
    125533 3afa:D (2.5) BS01 dna ? GO:0000786 ... P06899 20498094
    125534 3afa:D (2.5) BS02 dna ? GO:0000786 ... P06899 20498094
    125535 3afa:E (2.5) BS01 dna ? GO:0000786 ... P68431 20498094
    125536 3afa:E (2.5) BS02 dna ? GO:0000786 ... P68431 20498094
    125537 3afa:F (2.5) BS01 dna ? GO:0000781 ... P62805 20498094
    125538 3afa:F (2.5) BS02 dna ? GO:0000781 ... P62805 20498094
    125539 3afa:G (2.5) BS01 dna ? GO:0000786 ... P04908 20498094
    125540 3afa:G (2.5) BS02 dna ? GO:0000786 ... P04908 20498094
    125541 3afa:H (2.5) BS01 dna ? GO:0000786 ... P06899 20498094
    125542 3afa:H (2.5) BS02 dna ? GO:0000786 ... P06899 20498094
    125543 3afb:A (1.76) BS01 MG 3.2.1.14 N/A Q8U1H5 20553502
    125544 3afb:B (1.76) BS01 MG 3.2.1.14 N/A Q8U1H5 20553502
    125545 3afg:A (2.0) BS01 CA 3.4.21.62 GO:0004252 ... Q5JIZ5 20595040
    125546 3afg:A (2.0) BS02 CA 3.4.21.62 GO:0004252 ... Q5JIZ5 20595040
    125547 3afg:B (2.0) BS01 CA 3.4.21.62 GO:0004252 ... Q5JIZ5 20595040
    125548 3afg:B (2.0) BS02 CA 3.4.21.62 GO:0004252 ... Q5JIZ5 20595040
    125549 3afh:A (2.0) BS01 GSU 6.1.1.17 GO:0000049 ... Q9X2I8 20606262
    125550 3afj:A (1.9) BS01 BGC 2.4.1.20 GO:0005975 ... O66264 N/A
    125551 3afj:A (1.9) BS02 PO4 2.4.1.20 GO:0005975 ... O66264 N/A
    125552 3afj:A (1.9) BS03 BGC 2.4.1.20 GO:0005975 ... O66264 N/A
    125553 3afj:B (1.9) BS01 BGC 2.4.1.20 GO:0005975 ... O66264 N/A
    125554 3afj:B (1.9) BS02 PO4 2.4.1.20 GO:0005975 ... O66264 N/A
    125555 3afk:A (1.95) BS01 GAL 3.1.21.- GO:0004536 ... Q6WY08 20530247
    125556 3afk:B (1.95) BS01 GAL 3.1.21.- GO:0004536 ... Q6WY08 20530247
    125557 3afl:A (2.99) BS01 LGU 4.2.2.- GO:0016829 ... A9CEJ9 20507980
    125558 3afl:A (2.99) BS02 LGU 4.2.2.- GO:0016829 ... A9CEJ9 20507980
    125559 3afl:A (2.99) BS03 MAW 4.2.2.- GO:0016829 ... A9CEJ9 20507980
    125560 3afn:A (1.63) BS01 NAP 1.1.1.126 N/A D6RU56 20685299
    125561 3afn:B (1.63) BS01 NAP 1.1.1.126 N/A D6RU56 20685299
    125562 3afn:C (1.63) BS01 NAP 1.1.1.126 N/A D6RU56 20685299
    125563 3afn:D (1.63) BS01 NAP 1.1.1.126 N/A D6RU56 20685299
    125564 3afo:A (2.0) BS01 NAI 2.7.1.86 GO:0005739 ... Q06892 N/A
    125565 3afo:B (2.0) BS01 NAI 2.7.1.86 GO:0005739 ... Q06892 N/A
    125566 3afr:A (2.0) BS01 peptide ? GO:0003677 ... P13053 20211257
    125567 3afr:A (2.0) BS02 ICJ ? GO:0003677 ... P13053 20211257
    125568 3afv:A (1.4) BS01 HEM 1.11.1.19 GO:0004601 ... Q8WZK8 21569205
    125569 3ag0:A (2.6) BS01 HEM 1.11.1.-
    1.14.12.-
    1.15.1.1
    1.7.-.-
    GO:0001666 ... Q8WWM9 21254233
    125570 3ag1:A (2.2) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 20385840
    125571 3ag1:A (2.2) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 20385840
    125572 3ag1:A (2.2) BS03 CU 7.1.1.9 GO:0004129 ... P00396 20385840
    125573 3ag1:A (2.2) BS04 MG 7.1.1.9 GO:0004129 ... P00396 20385840
    125574 3ag1:B (2.2) BS01 CUA 7.1.1.9 GO:0004129 ... P68530 20385840
    125575 3ag1:C (2.2) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 20385840
    125576 3ag1:F (2.2) BS01 ZN 1.9.3.1 GO:0005740 ... P00428 20385840
    125577 3ag1:G (2.2) BS01 DMU 1.9.3.1 GO:0005743 ... P07471 20385840
    125578 3ag1:M (2.2) BS01 DMU 1.9.3.1 GO:0006123 ... P10175 20385840
    125579 3ag1:N (2.2) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 20385840
    125580 3ag1:N (2.2) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 20385840
    125581 3ag1:N (2.2) BS03 CU 7.1.1.9 GO:0004129 ... P00396 20385840
    125582 3ag1:N (2.2) BS04 MG 7.1.1.9 GO:0004129 ... P00396 20385840
    125583 3ag1:O (2.2) BS01 CUA 7.1.1.9 GO:0004129 ... P68530 20385840
    125584 3ag1:S (2.2) BS01 ZN 1.9.3.1 GO:0005740 ... P00428 20385840
    125585 3ag1:T (2.2) BS01 DMU 1.9.3.1 GO:0005743 ... P07471 20385840
    125586 3ag1:Z (2.2) BS01 DMU 1.9.3.1 GO:0006123 ... P10175 20385840
    125587 3ag2:A (1.802) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 20385840
    125588 3ag2:A (1.802) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 20385840
    125589 3ag2:A (1.802) BS03 CU 7.1.1.9 GO:0004129 ... P00396 20385840
    125590 3ag2:A (1.802) BS04 MG 7.1.1.9 GO:0004129 ... P00396 20385840
    125591 3ag2:A (1.802) BS05 DMU 7.1.1.9 GO:0004129 ... P00396 20385840
    125592 3ag2:B (1.802) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 20385840
    125593 3ag2:B (1.802) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 20385840
    125594 3ag2:C (1.802) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 20385840
    125595 3ag2:C (1.802) BS02 DMU 7.1.1.9 GO:0004129 ... P00415 20385840
    125596 3ag2:C (1.802) BS03 DMU 7.1.1.9 GO:0004129 ... P00415 20385840
    125597 3ag2:F (1.802) BS01 ZN ? GO:0005740 ... P00428 20385840
    125598 3ag2:G (1.802) BS01 DMU ? GO:0005743 ... P07471 20385840
    125599 3ag2:J (1.802) BS01 DMU ? GO:0006123 ... P07470 20385840
    125600 3ag2:J (1.802) BS02 DMU ? GO:0006123 ... P07470 20385840

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).